| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,059,122 | C→T | 6.3% | R62W (CGG→TGG) | U712_15715 → | putative ABC transporter ATP‑binding protein YufO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,059,122 | 0 | C | T | 6.3% | 207.0 / 3.3 | 63 | R62W (CGG→TGG) | U712_15715 | putative ABC transporter ATP‑binding protein YufO |
| Reads supporting (aligned to +/- strand): ref base C (25/34); new base T (2/2); total (27/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01 | |||||||||||
GTATCGTCGCCAATGACAATATCAATCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAATATTATTCTCGG > CP006881/3058985‑3059246 | gTATCGTCGCCAATGACAATATCAATCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCg > 8:327679/1‑139 (MQ=255) tcgtcgCCAATGACAATATCAATCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCATTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGt > 7:335662/1‑139 (MQ=255) gCCAATGACAATATCAATCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTgcgc < 4:139690/138‑1 (MQ=255) tGACAATATCAATCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCgcggc > 5:46317/1‑136 (MQ=255) aCAATATCAATCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCgaga < 6:46317/138‑1 (MQ=255) aaTATCAATCTTCAAGTAAAAAAACGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAgg < 6:162401/139‑1 (MQ=255) tatCAATCTTCAAGTCAAAAAAGGCTAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCATTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCTGCGAGAAGGTg < 8:19844/139‑1 (MQ=255) tatCAATCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTg > 5:78911/1‑139 (MQ=255) aTCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACAt > 2:1892/1‑139 (MQ=255) ttCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCaa > 6:209967/1‑139 (MQ=255) ttCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATAAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGTTGAAATTCGGGTGCGCGGCGAGAAGCTGCACATCaa > 4:347170/1‑139 (MQ=255) cAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCaa > 3:149799/1‑137 (MQ=255) cAAGTCAAAAAACGAGAAATACACGCTTTGCTCGGTGAAAACGGAGCGGTGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGTGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCaa < 3:347170/137‑1 (MQ=255) gTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGcc < 4:182501/139‑1 (MQ=255) aaaTACACGCGTTGCTCGGTGAAAACGGCGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGaa < 8:269104/139‑1 (MQ=255) aaaTACACGCGGTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGaa < 4:321800/139‑1 (MQ=255) aaaTACACGCGGTGCTCCGTTAAAAAGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGaa < 4:326876/139‑1 (MQ=255) ccgcgTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCt < 3:204227/138‑1 (MQ=255) acGCGTTGCTCGTTGAAAAGGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGTGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCt < 1:291029/139‑1 (MQ=255) acGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCt < 7:237186/139‑1 (MQ=255) acGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGCGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCt < 8:344988/139‑1 (MQ=255) acGCGGTGCTCGGTGAAAACGGTTCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCt < 6:232644/139‑1 (MQ=255) cgcgTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCtt < 5:209967/139‑1 (MQ=255) cgTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCttgg < 7:187477/139‑1 (MQ=255) gCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTTGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCttggaatt > 3:292998/1‑139 (MQ=255) gCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTTGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCttggaatt > 3:287835/1‑139 (MQ=255) gCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTg < 3:74333/100‑1 (MQ=255) gCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTg > 4:74333/1‑100 (MQ=255) gCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCttggaatt > 2:354393/1‑139 (MQ=255) gCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCttggaatt > 8:116825/1‑139 (MQ=255) gTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTtggaattggaat < 3:145280/139‑1 (MQ=255) gTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTtggaattggaat > 5:290278/1‑139 (MQ=255) aaaaCGGTGCGGGGAAATCAACATTGATGAATGGCCTTTGCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATgg < 6:260261/138‑1 (MQ=255) ggAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCAcc < 7:30509/139‑1 (MQ=255) ggAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCAcc < 7:38339/139‑1 (MQ=255) gAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCa < 4:135354/139‑1 (MQ=255) gAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCa < 1:1892/139‑1 (MQ=255) aGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAg < 5:74953/139‑1 (MQ=255) aGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAg < 6:156567/139‑1 (MQ=255) aGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAg < 8:123811/139‑1 (MQ=255) aGCGGGCAAATCAACATTGATGAATGTCCTTTTCGGGCTGGATCAGCCGGAGCGGGGGGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAg < 5:24300/139‑1 (MQ=255) gCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGc > 4:82530/1‑139 (MQ=255) cGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTTGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCa < 4:292998/139‑1 (MQ=255) cGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTTGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCa < 4:287835/139‑1 (MQ=255) cATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCttgt > 7:289646/1‑139 (MQ=255) gatgaATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGa < 7:327679/138‑1 (MQ=255) gatgaATGTCCTTTTCGGGCTGGATCAGCCGGAGCGGGGGGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGa < 4:361638/138‑1 (MQ=255) atgaATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGaca > 1:2236/1‑139 (MQ=255) tGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGca < 6:61045/63‑1 (MQ=255) tGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGca > 5:61045/1‑63 (MQ=255) tGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCtt > 8:280640/1‑138 (MQ=255) ttCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGt < 7:116825/137‑1 (MQ=255) ggCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGa < 5:46244/139‑1 (MQ=255) gCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGa > 6:46244/1‑138 (MQ=255) tATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAata > 3:145237/1‑139 (MQ=255) aGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACCGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAAtatta < 4:145237/138‑1 (MQ=255) aGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAATATTATTCTCgg > 7:271254/1‑139 (MQ=255) aGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAATATTATTCTCgg > 7:31035/1‑139 (MQ=255) aGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAATATTATTCTCgg > 5:169743/1‑139 (MQ=255) aGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAATATTATTCTCgg > 3:198285/1‑139 (MQ=255) aGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAATATTATTCTCgg > 2:144973/1‑139 (MQ=255) aGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGAGCACCa > 8:287402/1‑88 (MQ=255) aGCGGGGGGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCa < 7:287402/88‑1 (MQ=255) | GTATCGTCGCCAATGACAATATCAATCTTCAAGTCAAAAAAGGCGAAATACACGCGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACATTGATGAATGTCCTTTTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAAGGTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATGGTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAATATTATTCTCGG > CP006881/3058985‑3059246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |