| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,221,689 | G→A | 6.8% | I201I (ATC→ATT) | U712_16590 ← | putative ABC transporter substrate‑binding lipoprotein yvrC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,221,689 | 0 | G | A | 6.8% | 192.2 / 3.1 | 59 | I201I (ATC→ATT) | U712_16590 | putative ABC transporter substrate‑binding lipoprotein yvrC |
| Reads supporting (aligned to +/- strand): ref base G (31/24); new base A (2/2); total (33/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.46e-01 | |||||||||||
TACGATCGCCTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGATCATTTCGATTGAT > CP006881/3221554‑3221827 | tACGATCGCCTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGAt > 3:290483/1‑138 (MQ=255)tACGATCGCCTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGAt > 8:358511/1‑138 (MQ=255)tACGATCGCCTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGACAGGATCAGGAGAAACCTCGAt < 3:197528/138‑1 (MQ=255)tACGATCGCCTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCATTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGAt > 5:188326/1‑138 (MQ=255) tCGCCTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATAc > 7:332347/1‑139 (MQ=255) tCGCCTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATAc > 4:93157/1‑139 (MQ=255) cTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCATTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCtt < 6:188326/139‑1 (MQ=255) ccATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGaa < 3:61985/139‑1 (MQ=255) cATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGaaa < 3:365979/139‑1 (MQ=255) cATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGaaa < 4:373407/139‑1 (MQ=255) aTCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAAt > 6:181178/1‑139 (MQ=255) aTCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAAt > 2:152351/1‑139 (MQ=255) aTCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAAt > 8:44112/1‑139 (MQ=255) tCTGATCCGCAGCTGCGTTTTTAGCATGGATGTCATTTAGCATGTCATTCATAAACGTATCTTTTCCGGTTGTATATATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGtttt > 8:347421/1‑139 (MQ=255) tCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCAATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGtttt > 7:284176/1‑139 (MQ=255) tCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCAATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGtttt > 7:289291/1‑139 (MQ=255) aTCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCt < 5:181178/139‑1 (MQ=255) cGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCttt < 6:243207/138‑1 (MQ=255) gCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCttttt < 4:104805/139‑1 (MQ=255) gCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCtt < 6:315313/139‑1 (MQ=255) gTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAata < 7:358511/139‑1 (MQ=255) gTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAata < 1:120866/139‑1 (MQ=255) gTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAata < 3:198014/139‑1 (MQ=255) aGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCtt > 7:269564/1‑138 (MQ=255) tGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGAt < 8:332347/139‑1 (MQ=255) ggATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATc > 1:7048/1‑139 (MQ=255) gttGAGATGTAGCATTTCATTCCTCAACGTATCTTTTCCGGTTGTCTAAATGTCCGGATCAGGAGTAACCTCGATAAATACGCGTATCTCCTCGTCTTTTGATATGGTTTTCGCTTTTTCTTGTATATGCTTTAGATc < 8:358508/136‑1 (MQ=255) gATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCt > 8:7302/1‑139 (MQ=255) aGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAat > 6:308034/1‑116 (MQ=255) aGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAat < 5:308034/116‑1 (MQ=255) ttcattcaTAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTc < 6:359856/81‑1 (MQ=255) ttcattcaTAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTc > 5:359856/1‑81 (MQ=255) ttcattcaTAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGATATGTTTTTCGCTTTTTCTTGAATATCCTTTATATCTGATTTCATGCtttt > 5:188290/1‑138 (MQ=255) ttcattcaTAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAata > 8:120317/1‑112 (MQ=255) ttcattcaTAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAata < 7:120317/112‑1 (MQ=255) tcattcatAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTATTTTGAAATTGTTTTCGATTTTTCTTGAATATCATTTAGATCTGATTACAAGCATTTCa > 8:315311/1‑139 (MQ=255) tcattaatAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCAGGCTTTTCa > 6:224309/1‑139 (MQ=255) atAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCt > 5:202343/1‑139 (MQ=255) aaaCGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTGTTTTGAAATGGTTTTCGGGTTTTGTTGTATTTCCTTTATATCTGATTTCATGCTTTTATCGAGCTGa > 2:337336/1‑139 (MQ=255) aaCGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGAt < 8:269564/139‑1 (MQ=255) gTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCgg > 2:72451/1‑139 (MQ=255) tATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGATAATCCTTTAGATCTGATTTGATTCTTTTCAAGAGCTGATCGGc > 1:174890/1‑139 (MQ=255) tCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTtc > 4:297242/1‑139 (MQ=255) gTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTccg > 3:165346/1‑139 (MQ=255) ttGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTccgc < 4:290483/139‑1 (MQ=255) aTGTCAGGATCAGGAGAAACCTCAATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCGTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAg < 8:284176/139‑1 (MQ=255) aTGTCAGGATCAGGAGAAACCTCAATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGGTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAg < 8:289291/139‑1 (MQ=255) aggatcaggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCtt < 1:358291/78‑1 (MQ=255) aggatcaggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCtt > 2:358291/1‑78 (MQ=255) aggatcaggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTtct > 8:304024/1‑139 (MQ=255) aggatcaggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATATCATGCTTTTCAAGATCTGATCGGCTGTTTTCTACTCCCACCCAGCAtct > 3:26525/1‑139 (MQ=255) aggatcaggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATATGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTtct > 6:192584/1‑139 (MQ=255) gatcaggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCtt > 5:284821/1‑76 (MQ=255) gatcaggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCtt < 6:284821/76‑1 (MQ=255) aggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAATTGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGAt > 1:282292/1‑138 (MQ=255) aggaGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGAt < 3:297242/138‑1 (MQ=255) aCCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGATCATTTCga < 5:304743/139‑1 (MQ=255) aCCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGATCATTTCga > 6:107471/1‑139 (MQ=255) cTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGATCATTTCgatt < 1:297470/139‑1 (MQ=255) gATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGATCATTTCgattgat > 5:145287/1‑139 (MQ=255) gATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGATCATTTCgattgat < 2:7048/139‑1 (MQ=255) gATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGATCATTTCgattgat > 6:183539/1‑139 (MQ=255) gATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCAAGCTTCTCCGATCAt < 4:200434/129‑1 (MQ=255) gATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCAAGCTTCTCCGATCAt > 3:200434/1‑129 (MQ=255) | TACGATCGCCTCGTCTGTCATTTGCACCCATCCTGTCTGATCCGCAGCTGCGTTTTTAGCATGGATGACATTTAGCATTTCATTCATAAACGTATCTTTTCCGGTTGTATAAATGTCAGGATCAGGAGAAACCTCGATAAATACGCTTTTCTCCTCGTCTTTTGAAATGGTTTTCGCTTTTTCTTGAATATCCTTTAGATCTGATTTCATGCTTTTCACGAGCTGATCGGCTTTTTTCTCCGCCCCGCCAGCTTCTCCGATCATTTCGATTGAT > CP006881/3221554‑3221827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |