| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,485,403 | T→A | 6.1% | Y788F (TAT→TTT) | U712_17900 ← | Minor teichoic acid biosynthesis protein ggaB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,485,403 | 0 | T | A | 6.1% | 207.1 / 3.4 | 66 | Y788F (TAT→TTT) | U712_17900 | Minor teichoic acid biosynthesis protein ggaB |
| Reads supporting (aligned to +/- strand): ref base T (29/33); new base A (2/2); total (31/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.55e-01 | |||||||||||
TCATAATAATCAAGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGTTCATCATT > CP006881/3485268‑3485539 | tCATAATAATCAAGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAgc < 3:62881/139‑1 (MQ=255)tCATAATAATCAAGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAgc < 7:272821/139‑1 (MQ=255)tCATAATAATCAAGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAgc < 4:299182/139‑1 (MQ=255) ataataATCAAGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAgctg < 3:87464/139‑1 (MQ=255) ataataATCAAGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAgctg < 6:12796/139‑1 (MQ=255) ataataATCAAGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAgctg < 5:257227/139‑1 (MQ=255) aGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGt > 2:352947/1‑139 (MQ=255) tttAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGATTTAAATAGCATTTGATAGCTGCTGTTATAGTCg > 5:342642/1‑139 (MQ=255) tttAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGctgctg < 4:142409/130‑1 (MQ=255) tttAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGctgctg > 3:142409/1‑130 (MQ=255) tttAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCg > 6:12015/1‑139 (MQ=255) tAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCgg > 5:71610/1‑138 (MQ=255) aaTGGTATGACTTTTCGTATTGATAATAAATTACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCaaa < 5:155870/139‑1 (MQ=255) aaTGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCaaa < 7:146530/139‑1 (MQ=255) aaTGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCaaa < 7:291766/139‑1 (MQ=255) aaTGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGAAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCaaa < 1:353820/139‑1 (MQ=255) tGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACt < 2:298995/139‑1 (MQ=255) tATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca > 1:92619/1‑139 (MQ=255) tATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca < 2:62827/139‑1 (MQ=255) tATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca > 6:340848/1‑139 (MQ=255) tATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca < 4:271611/139‑1 (MQ=255) tATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca < 7:144356/139‑1 (MQ=255) tATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca > 1:239486/1‑139 (MQ=255) tATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca < 1:126217/139‑1 (MQ=255) ttttCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATaa > 8:218333/1‑138 (MQ=255) atCGTATTGATAATAAATAACAGGTTTTTTCTCAGATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCa > 6:316451/2‑139 (MQ=255) ataataAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCa < 3:287781/139‑1 (MQ=255) aCAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACa < 8:63343/138‑1 (MQ=255) aCAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACa > 3:343079/1‑138 (MQ=255) cAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACaa > 2:133657/1‑138 (MQ=255) cAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAAt < 7:173996/139‑1 (MQ=255) aGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca < 5:243796/110‑1 (MQ=255) aGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCca > 6:243796/1‑110 (MQ=255) tttCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTg < 5:220111/135‑1 (MQ=255) tttCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTg > 6:220111/1‑135 (MQ=255) tctcATATTAAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCt < 2:166525/138‑1 (MQ=255) tctcATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCt < 7:11935/138‑1 (MQ=255) tctcATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCt < 1:162266/138‑1 (MQ=255) atatGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGa < 2:66143/136‑1 (MQ=255) atatGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGAAAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCt > 2:371873/1‑134 (MQ=255) atatGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGAAAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCt > 2:367216/1‑134 (MQ=255) atatGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGAAAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCt < 1:371873/134‑1 (MQ=255) atatGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGAAAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCt < 1:367216/134‑1 (MQ=255) tatGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAatat < 2:239486/139‑1 (MQ=255) aaCGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAGCTCCGCATAATCAGGCTTTTCAAAGTCTCCAATCTGTTGCTGCATATCGGGGTGCGGa > 4:132161/1‑138 (MQ=255) aCGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTTAATATCTGGGGGAGGaa > 7:244913/1‑138 (MQ=255) aCGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAAGTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTGTTCAAAGTCTACAATCTGGTGCTGAATATCTGGGTGAGGaa > 7:250168/1‑138 (MQ=255) cAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGt > 7:355599/1‑139 (MQ=255) aaaaaTCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCT‑‑GTGAGGAAAAAAAGTTATTTtat < 2:328940/139‑1 (MQ=255) aaaTCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTta > 7:149955/1‑138 (MQ=255) atatTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAATTCTACAATCTGTTGCTGAATATATTGTTGAGGAAAAAAAGTTATTTTATAATTTTTTTTCt > 6:361548/1‑136 (MQ=255) gaagaaTTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAAtt > 7:135578/1‑139 (MQ=255) gaagaaTTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGATGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAAtt > 6:31140/1‑139 (MQ=255) aagaaTTAAATAGCATTTGATAGCTGCTGTTATATTCGACAAAAAAAAAATAAACATGCTATTCAAATTCTAAAATCTGTTGCTGAATATCTGTGTAAGTAATAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTc > 6:144337/1‑139 (MQ=255) ttAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGAt > 1:8137/1‑137 (MQ=255) aGCATATGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGtt < 1:317948/139‑1 (MQ=255) gCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGtt < 5:12015/138‑1 (MQ=255) gCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGtt < 2:8137/138‑1 (MQ=255) gCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGtt < 3:132161/138‑1 (MQ=255) cATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGaa < 2:303172/89‑1 (MQ=255) cATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGaa > 1:303172/1‑89 (MQ=255) cATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGTtca > 5:224593/1‑139 (MQ=255) tttGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGTtcat > 8:216054/1‑138 (MQ=255) tttGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGTtcat > 3:219122/1‑138 (MQ=255) gATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGTTcatcat > 1:32902/1‑138 (MQ=255) aTAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGTTCATCAtt < 7:218333/138‑1 (MQ=255) | TCATAATAATCAAGTTTAAAATGGTATGACTTTTCGTATTGATAATAAATAACAGGTTTTTTCTCATATGCAAAATCAAACGCAACAGATGAAAAATCAGTAATCATTATATTAGAAGAATTAAATAGCATTTGATAGCTGCTGTTATAGTCGGCAAACTCCACATAATCATGCTTTTCAAAGTCTACAATCTGTTGCTGAATATCTGGGTGAGGAAAAAAAGTTATTTTATAATTATTTTTCTTAGCAAATTCGATTAGCCGTTCATCATT > CP006881/3485268‑3485539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |