| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,615,489 | G→T | 23.2% | L174L (CTC→CTA) | U712_18635 ← | Peptide chain release factor 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,615,489 | 0 | G | T | 23.2% | 43.3 / 3.0 | 36 | L174L (CTC→CTA) | U712_18635 | Peptide chain release factor 1 |
| Reads supporting (aligned to +/- strand): ref base G (12/15); new base T (6/3); total (18/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATGGATGTCGACCTCTACCTCTTCTGCCTCAGGAAGACATGCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACGGGAATACATTC > CP006881/3615362‑3615616 | cATGGATGTCGACCTCTACCTCTTCTGCCTCAGGAAGACATGCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAAt > 4:188092/1‑138 (MQ=255) acctctacctctTCTGCCTCAGGAAGACATGCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTGTTGATATTTTAGTTTACAATACGCGCCGCGTc > 1:52891/1‑139 (MQ=255) ctacctgtTCTGCCTCTGTAAGACATCCCAGTGTGGCTGGGTATGTATGGATGCGTCCGCCTTATTCTGTTTCCGGAACCCGCTGTACGGGGTGGGCGCGGTTTTAATATTTGTGTTTAGAATACGCGCCGCTTCCTGt < 6:338396/139‑1 (MQ=255) ctacctctTCTGCCTCAGGAAGACATGCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTg > 8:64003/1‑138 (MQ=255) cctctTCTGCCTCAGGAAGACATGCCACTGTTGCAGTGGATTTATGGATGCGGCCGCCTGATGATGTTTCCGGAACACGCGGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGt < 8:7651/136‑1 (MQ=255) ctGCCTCAGGAAGACATGCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTTAGTTTAGAATACGCGCCGGTTCCTGTAATCATaaa > 8:362288/1‑139 (MQ=255) ctGCCTCAGGAAGACATGCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTGTTCATATTTTAGTTTAGAATACCCGCCGCGTCCGGTAATCATaa > 5:338396/1‑138 (MQ=255) ccgcaaGACATGCCACTGTTGCTGTGGTTGTTTGGAGGGGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGGGGTGGGCGCGGTTTTAATATTTGAGTTTAGAATCCGCGCCGCTTCCTGTAATCATAAAgatgat < 6:158842/135‑1 (MQ=255) aGGACGACATGCAAGTGTTGCTGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACAGGCTGTACGCGGTGGGGGCCGTTTTCATATTTGAGTTTAGATTCCGCGCCGCTTCCTGTAATCATAAAgatgat < 7:362288/138‑1 (MQ=255) aCATGCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTg > 1:307513/1‑139 (MQ=255) gCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCAGTTATCATAAAGATGATCTCTTTGTTgc > 8:50826/1‑139 (MQ=255) tGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCg < 7:64003/139‑1 (MQ=255) ggATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTTTACGCGGTGGGCGCGGTTTTAATATTTGAGTTTAGAAAACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCg < 3:143742/138‑1 (MQ=255) gATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTAATATTTTAGTTTAGAAAAAGCCCCGCTTCCTGTAATCATAAAGAAGAAATCTTTGTAGCCGCCCGGTCCGGGTAAATTCGCt > 5:274231/1‑139 (MQ=255) tGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTATAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTATCCGCCCCTTCCGGTTACATTCGCTTc > 3:153887/1‑139 (MQ=255) tGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTGTTGATATTTTTGTTTAGAATACGCGCCGCGTACGGTAATAATAAAGATGATCTGTTTGTTGCCGCCCGTTCCGGGTCAAATCGCTTc > 4:105146/1‑139 (MQ=255) cGCCTGATTCTGTTTCGGGAACACGCTGTACGCGGTGGGCGCGGTTTTAATATTTGAGTTTATAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGAc < 2:307513/139‑1 (MQ=255) ccTGATTGTGTTTCGGGAACACGCTGTACGGGTTGGGCGGGGTTTTAATTTTTTAGTTTATATTACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACct < 6:274231/139‑1 (MQ=255) ttttCGGTAACACGCTGTACGGGGTGGTGGCCGTTTTAATTTTTTAGTTTAGAATCCGCGACGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTc < 2:52891/137‑1 (MQ=255) tttCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTTAGTTTAGAATACGCGCCGCTTCCTGGAATCATAAAGATGATGTCTTTTTTGCCGCCCGTTCCGGTTTCATTCGCGTCCCTGACCGCTGTTTTc > 5:254649/1‑137 (MQ=255) tCCGGAACAGGGTGTCCGGGGTGGGCGAGTTTTTAATATTTGTTTTTATATTACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAg < 6:254649/138‑1 (MQ=255) caggCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAg < 7:50826/136‑1 (MQ=255) acaggTACGCGGGGGGCGCCGTTTTCATATTTGCGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCt < 7:24295/135‑1 (MQ=255) tACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTTATCATAAAGATGATCACTTTGTAGCCGCCCCTTCCGCTTAAATTAGCTTCCAAGACCTCTGTTTTCCAGCCCTGAAGCTCAGc > 4:168450/1‑138 (MQ=255) gTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCGTCCGGTAATCATAAAGATGATCTCTTTGTTGCCGCCCGGTCCGGGTACATTCGCGTCCATGACCTCTGTTTTCCCGCCCTGAAGCTCAGCCTAACgg > 3:21004/1‑139 (MQ=255) gggCGCCGTTTTCATATTTGAGTTTATAATACGAGCCGCTTCCTGTAATAATAAATATGATCTAGTTGTAGCCTCCCGTTCCGGTTACATTCGCTTACATGACATATTTTTTCCAGCCCTGAAGCTCATCATAActgt > 6:176578/1‑135 (MQ=255) gggCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACggg > 4:106570/1‑138 (MQ=255) gcgcGGTTTTAATATTTTTTTTTTTAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACGGGAAt < 4:153887/139‑1 (MQ=255) gcgcCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATTATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCAt > 3:137862/1‑130 (MQ=255) gcgcCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCAt < 4:137862/130‑1 (MQ=255) gcgcCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACGGGAAt < 3:188092/139‑1 (MQ=255) gcgcCGTTTTCATATTTGAGTTAATAATCCGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACGGGAAt < 1:245024/139‑1 (MQ=255) gcgcCGTTTTCATATTTGAGTTAAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACGGGAAt < 3:105146/139‑1 (MQ=255) gcgcCGTTTTAAAATTTGAGTTTTGAATAACCGCCCCGTCCGGTTATCATAAAAATGATCTCTTTGTAGCCGCCCCGTCCGGTTTCATTCGCTTGCATTACCGCTGGTTTGCCGCCCGGAAGCTCACCAAAACGGGagg > 8:24295/1‑137 (MQ=255) cggTTTTAATTTTTGCTTTTAGAATCCGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACGGGAATACa < 4:21004/137‑1 (MQ=255) ttttCATATTTGAGTTTAGAATACGCGCCGCTTACTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACGGGAATACATTc > 3:156400/1‑139 (MQ=255) | CATGGATGTCGACCTCTACCTCTTCTGCCTCAGGAAGACATGCCACTGTTGCAGTGGATGTATGGATGCGTCCGCCTGATTCTGTTTCCGGAACACGCTGTACGCGGTGGGCGCCGTTTTCATATTTGAGTTTAGAATACGCGCCGCTTCCTGTAATCATAAAGATGATCTCTTTGTAGCCGCCCGTTCCGGTTACATTCGCTTCCATGACCTCTGTTTTCCAGCCCTGAAGCTCAGCATAACGGGAATACATTC > CP006881/3615362‑3615616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |