Fri Jun  4 10:17:47 2021

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/CP006881_PY79ref.gb -r /var/data/psij663pht315_arae_xylab-sgc7sg13-promoter.gb /var/alemutpipe-outputs/good/JADR49_R4_A16_F57_I1_R1_S71_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JADR49_R4_A16_F57_I1_R1_S71_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/JADR49_R4_A16_F57_I1_R1_S71_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JADR49_R4_A16_F57_I1_R1_S71_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/JADR49_R4_A16_F57_I1_R1_S71_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JADR49_R4_A16_F57_I1_R1_S71_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/JADR49_R4_A16_F57_I1_R1_S71_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JADR49_R4_A16_F57_I1_R1_S71_L004_R2_001.good.fq.gz