Fri Jun  4 10:15:37 2021

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/NC_000964_BS168_ref.gbk -r /var/data/psij663pht315_arae_xylab-sgc7sg13-promoter.gb /var/alemutpipe-outputs/good/JADR33_M9H_C3_A23_F66_I1_R1_S66_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JADR33_M9H_C3_A23_F66_I1_R1_S66_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/JADR33_M9H_C3_A23_F66_I1_R1_S66_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JADR33_M9H_C3_A23_F66_I1_R1_S66_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/JADR33_M9H_C3_A23_F66_I1_R1_S66_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JADR33_M9H_C3_A23_F66_I1_R1_S66_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/JADR33_M9H_C3_A23_F66_I1_R1_S66_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JADR33_M9H_C3_A23_F66_I1_R1_S66_L004_R2_001.good.fq.gz