Wed Jan 20 11:50:34 2021

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -p -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/CP006881_PY79ref.gb -r /var/data/pSIJ663_pHT315.gb /var/alemutpipe-outputs/good/JADR46_end_pooled_R1.good.fq.gz /var/alemutpipe-outputs/good/JADR46_end_pooled_R2.good.fq.gz