mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 114,506 | G→T | 5.2% | intergenic (+19/+16) | guaC → / ← hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| RA | 114,507 | A→T | 5.1% | intergenic (+20/+15) | guaC → / ← hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| RA | 126,060 | A→G | 5.2% | E122E (GAA→GAG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,075 | T→G | 6.5% | V127V (GTT→GTG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,081 | T→C | 7.4% | D129D (GAT→GAC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,093 | T→C | 5.6% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,392 | C→A | 6.6% | A233D (GCC→GAC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,405 | A→G | 8.8% | S237S (TCA→TCG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 177,405 | G→T | 5.8% | L74M (CTG→ATG) | yadS ← | UPF0126 family inner membrane protein |
| RA | 218,544 | C→A | 5.9% | D78Y (GAT→TAT) | proS ← | prolyl‑tRNA synthetase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 394,473 | G→T | 5.0% | intergenic (+55/‑33) | yaiT → / → yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| RA | 464,354 | C→A | 6.5% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 6.1% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 5.7% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 657,533 | A→T | 5.6% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 756,150 | C→T | 100% | Q82* (CAG→TAG) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 852,857 | A→C | 5.0% | intergenic (‑260/+12) | opgE ← / ← mntS | OPG biosynthetic transmembrane phosphoethanolamine transferase/Mn(2)‑response protein, MntR‑repressed |
| RA | 857,576 | T→C | 6.0% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 6.2% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 892,455 | G→C | 7.4% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 7.5% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 7.4% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 909,610 | G→T | 7.0% | T480T (ACC→ACA) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| RA | 922,314:1 | +C | 6.3% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 925,581 | A→C | 5.2% | intergenic (+41/+303) | clpA → / ← serW | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser |
| RA | 1,217,126 | C→A | 9.0% | intergenic (+130/‑202) | ymgC → / → ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 1,286,793 | A→G | 8.8% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,287,420 | G→C | 5.3% | intergenic (‑92/+118) | tyrV ← / ← tyrT | tRNA‑Tyr/tRNA‑Tyr |
| RA | 1,314,682 | A→T | 7.7% | intergenic (+24/+36) | ompW → / ← yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,314,683 | T→A | 7.5% | intergenic (+25/+35) | ompW → / ← yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,314,684 | A→T | 7.1% | intergenic (+26/+34) | ompW → / ← yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,324,837 | A→C | 5.2% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 5.3% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 5.1% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,466,138 | G→A | 7.1% | pseudogene (747/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,144 | G→T | 8.8% | pseudogene (753/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,201 | T→C | 6.6% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,517,055 | C→A | 5.2% | intergenic (+53/+44) | patD → / ← yncL | gamma‑aminobutyraldehyde dehydrogenase/stress‑induced small inner membrane enterobacterial protein |
| RA | 1,552,191 | C→A | 21.7% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,567,466 | G→C | 6.2% | intergenic (‑326/+38) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,467 | G→T | 5.4% | intergenic (‑327/+37) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,469 | A→T | 5.5% | intergenic (‑329/+35) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,471 | A→C | 5.9% | intergenic (‑331/+33) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,472 | G→C | 5.5% | intergenic (‑332/+32) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,736,097 | T→A | 5.2% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,864,763 | A→T | 5.4% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,928,799 | A→C | 6.2% | L14R (CTT→CGT) | ptrB ← | protease II |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,001,927 | G→C | 5.0% | intergenic (‑138/+183) | fliA ← / ← fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| RA | 2,041,173 | C→A | 5.1% | intergenic (+55/‑202) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,160,882 | A→C | 10.0% | T833P (ACG→CCG) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,357,665 | G→A | 9.4% | G254G (GGG→GGA) | yfaD → | transposase_31 family protein |
| RA | 2,405,389 | G→A | 6.4% | intergenic (‑317/+314) | nuoA ← / ← lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,474,881 | G→A | 5.8% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,477,022 | T→G | 7.0% | D203A (GAC→GCC) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,483,900 | T→A | 5.5% | V49D (GTC→GAC) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,483,912 | T→A | 5.2% | V53D (GTC→GAC) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,519,222 | T→G | 6.4% | intergenic (+17/+35) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,225 | T→A | 5.4% | intergenic (+20/+32) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,228 | C→A | 5.7% | intergenic (+23/+29) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,654,142 | T→A | 6.3% | noncoding (288/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,654,143 | T→A | 6.2% | noncoding (289/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,654,144 | T→A | 5.7% | noncoding (290/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,768,609 | T→C | 5.6% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 5.0% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 5.0% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,776,132 | A→C | 5.6% | S72R (AGC→CGC) | yfjX → | CP4‑57 prophage; putative antirestriction protein |
| RA | 2,788,676 | A→T | 5.4% | intergenic (+27/‑309) | ygaQ → / → csiD | uncharacterized protein; putative enzyme/carbon starvation protein |
| RA | 2,962,964 | T→G | 5.2% | T65P (ACG→CCG) | ygdB ← | DUF2509 family protein |
| RA | 3,067,320 | A→T | 7.6% | intergenic (‑147/+20) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,067,323 | A→T | 8.1% | intergenic (‑150/+17) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,107,876 | A→C | 5.5% | I427S (ATT→AGT) | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,250,989 | G→C | 5.6% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,991 | A→T | 5.2% | intergenic (+37/‑33) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,251,392 | C→A | 10.3% | A123A (GCC→GCA) | yqjG → | putative S‑transferase |
| RA | 3,266,132 | C→A | 5.2% | G312C (GGT→TGT) | tdcA ← | tdc operon transcriptional activator |
| RA | 3,423,531 | T→G | 5.3% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,423,621 | C→G | 5.3% | noncoding (35/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,458,110 | C→A | 100% | T578T (ACC→ACA) | gspD → | general secretory pathway component, cryptic |
| RA | 3,469,050 | G→A | 5.7% | N268N (AAC→AAT) | chiA ← | periplasmic endochitinase |
| RA | 3,482,325 | G→A | 100% | R346H (CGC→CAC) | yheS → | ABC‑F family protein predicted regulatory ATPase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,659,467 | A→C | 7.2% | E79A (GAA→GCA) ‡ | mdtE → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,659,468 | A→C | 7.6% | E79D (GAA→GAC) ‡ | mdtE → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,659,469 | G→T | 7.5% | G80C (GGC→TGC) ‡ | mdtE → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,659,470 | G→T | 7.1% | G80V (GGC→GTC) ‡ | mdtE → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,966,862 | G→A | 24.2% | R149H (CGT→CAT) | rho → | transcription termination factor |
| RA | 3,966,877 | C→A | 9.1% | T154N (ACT→AAT) | rho → | transcription termination factor |
| RA | 3,967,036 | T→A | 6.3% | L207Q (CTG→CAG) | rho → | transcription termination factor |
| RA | 3,967,449 | C→T | 19.4% | L345F (CTC→TTC) | rho → | transcription termination factor |
| RA | 4,094,489 | G→A | 5.3% | intergenic (‑217/+234) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,296,060 | C→T | 35.4% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,473,927 | C→A | 100% | A43S (GCC→TCC) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,510,336 | A→C | 6.7% | intergenic (+203/+354) | yjhV → / ← fecE | pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 448611 | 450722 | 2112 | 67 [64] | [65] 66 | [cyoC]–[cyoA] | [cyoC],cyoB,[cyoA] |
| * | * | ÷ | NC_000913 | 1166010 | 1167443 | 1434 | 67 [64] | [65] 66 | ndh | ndh |
| * | * | ÷ | NC_000913 | 3423685–3424234 | 3424569–3424238 | 5–885 | 68 [65] | [64] 66 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 4 (0.030) | 4/264 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 34719 = | NA (NA) | 3 (0.020) | 3/272 | NT | NA | intergenic (+24/+62) | caiF/caiE | cai operon transcriptional activator/stimulator of CaiD and CaiB enzyme activities |
| ? | NC_000913 | 34767 = | NA (NA) | intergenic (+72/+14) | caiF/caiE | cai operon transcriptional activator/stimulator of CaiD and CaiB enzyme activities | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.050) | 3/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 3 (0.030) | 3/270 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 6 (0.050) | 4/260 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 382323 | NA (NA) | 3 (0.030) | 3/268 | NT | NA | noncoding (1064/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382348 | NA (NA) | noncoding (1089/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 601044 | 92 (0.750) | 7 (0.060) | 6/260 | NT | 7.4% | coding (2331/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | NC_000913 | = 601061 | 90 (0.780) | coding (2348/3144 nt) | cusA | copper/silver efflux system, membrane component | |||||
| * | ? | NC_000913 | 1207790 = | 29 (0.230) | 37 (0.340) | 34/246 | NT | 51.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 45 (0.410) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 29 (0.230) | 60 (0.550) | 49/246 | NT | 62.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 45 (0.410) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 131 (1.090) | 93/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1468798 = | NA (NA) | 3 (0.030) | 3/264 | NT | NA | noncoding (443/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1468838 = | NA (NA) | noncoding (403/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2729475 = | 70 (0.570) | 5 (0.040) | 5/258 | NT | 8.3% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 46 (0.400) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2947575 | 3 (0.020) | 5 (0.060) +42 bp |
5/194 | NT | 9.6% | intergenic (+2/‑32) | metW/metV | tRNA‑Met/tRNA‑Met |
| ? | NC_000913 | = 2947757 | 133 (1.080) | coding (1254/1254 nt) | amiC | N‑acetylmuramoyl‑L‑alanine amidase | |||||
| * | ? | NC_000913 | = 3620350 | NA (NA) | 3 (0.030) | 3/266 | NT | 100% | coding (1159/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620425 | 0 (0.000) | coding (1234/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 4168332 = | 66 (0.530) | 5 (0.040) | 3/258 | NT | 8.5% | intergenic (+132/‑40) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | 4168374 = | 46 (0.400) | noncoding (3/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4394806 | 110 (0.890) | 6 (0.050) | 5/266 | NT | 5.3% | coding (741/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| ? | NC_000913 | = 4394826 | 109 (0.920) | coding (761/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase | |||||
| * | ? | NC_000913 | 4542682 = | 105 (0.850) | 16 (0.140) | 15/260 | NT | 13.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 109 (0.940) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 102 (0.830) | 17 (0.150) | 15/260 | NT | 14.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 109 (0.940) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||