mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 126,093 | T→C | 8.4% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,147 | T→G | 6.5% | A151A (GCT→GCG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,384 | C→T | 9.1% | D230D (GAC→GAT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,392 | C→A | 17.2% | A233D (GCC→GAC) ‡ | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,393 | C→A | 11.4% | A233A (GCC→GCA) ‡ | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,405 | A→G | 10.6% | S237S (TCA→TCG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 156,519 | G→T | 5.2% | P122Q (CCA→CAA) | yadN ← | putative fimbrial‑like adhesin protein |
| RA | 217,037 | A→T | 5.4% | intergenic (‑34/+20) | yaeF ← / ← proS | putative lipoprotein/prolyl‑tRNA synthetase |
| RA | 228,997 | T→C | 6.1% | noncoding (70/77 nt) | aspU → | tRNA‑Asp |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 318,652 | T→A | 5.0% | intergenic (‑85/+24) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 353,359 | A→G | 8.6% | Q218Q (CAA→CAG) | prpE → | propionate‑‑CoA ligase |
| RA | 422,429 | T→G | 27.9% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| RA | 469,744 | C→T | 6.4% | L292L (CTG→TTG) | mdlA → | putative multidrug ABC transporter ATPase |
| RA | 554,812 | A→G | 6.8% | T68A (ACC→GCC) | cysS → | cysteinyl‑tRNA synthetase |
| RA | 821,875 | C→T | 5.5% | Q208Q (CAG→CAA) | ybhN ← | UPF0104 family inner membrane protein |
| RA | 875,401 | G→T | 13.8% | A23S (GCC→TCC) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 1,052,260 | T→C | 5.3% | intergenic (+20/+29) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,261 | G→A | 5.0% | intergenic (+21/+28) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,264 | A→G | 5.1% | intergenic (+24/+25) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,226,835 | C→A | 5.2% | T79K (ACA→AAA) | ycgJ → | uncharacterized protein |
| RA | 1,272,426 | T→A | 7.9% | intergenic (+77/‑81) | chaB → / → chaC | cation transport regulator/cation transport regulator |
| RA | 1,281,599 | Δ1 bp | 8.0% | coding (1736/3744 nt) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,281,601 | Δ1 bp | 7.7% | coding (1738/3744 nt) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,286,787 | G→A | 10.8% | intergenic (+261/+279) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,793 | A→G | 16.2% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,796 | T→C | 13.9% | intergenic (+270/+270) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,287,217 | G→T | 15.0% | noncoding (20/171 nt) | rttR ← | rtT sRNA, processed from tyrT transcript |
| RA | 1,337,755 | T→C | 5.8% | L642S (TTA→TCA) | acnA → | aconitate hydratase 1; aconitase A |
| JC | 1,351,359 | Δ106 bp | 8.4% | [ycjD] | [ycjD] | |
| RA | 1,448,678 | C→T | 6.3% | P387L (CCA→CTA) | feaB → | phenylacetaldehyde dehydrogenase |
| RA | 1,466,138 | G→A | 12.7% | pseudogene (747/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,144 | G→T | 15.7% | pseudogene (753/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,336 | C→G | 13.5% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,540,596 | C→T | 6.1% | P665P (CCG→CCA) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,552,191 | C→A | 23.4% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,577,595 | C→A | 6.9% | V9F (GTC→TTC) | yddB ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,580,806 | T→C | 5.4% | intergenic (‑16/+36) | ydeM ← / ← ydeN | putative YdeN‑specific sulfatase‑maturating enzyme/putative Ser‑type periplasmic non‑aryl sulfatase |
| RA | 1,700,361 | G→A | 7.2% | G336D (GGC→GAC) | malX → | maltose and glucose‑specific PTS enzyme IIB component and IIC component |
| RA | 1,708,662 | C→G | 11.4% | Q582E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,865,682 | G→C | 6.8% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,891,131 | A→G | 5.2% | L46P (CTG→CCG) | tsaB ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
| RA | 1,915,319 | G→A | 7.2% | Y72Y (TAC→TAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,982,500 | T→C | 6.0% | intergenic (‑113/+54) | otsB ← / ← araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| RA | 1,982,501 | T→C | 6.0% | intergenic (‑114/+53) | otsB ← / ← araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| RA | 1,990,086 | T→C | 5.6% | C136R (TGT→CGT) | tyrP → | tyrosine transporter |
| RA | 2,017,926 | Δ1 bp | 5.1% | coding (1373/1374 nt) | fliI → | flagellum‑specific ATP synthase |
| RA | 2,019,460 | G→A | 100% | V359I (GTC→ATC) | fliK → | flagellar hook‑length control protein |
| RA | 2,054,977 | T→G | 5.6% | intergenic (+18/‑84) | shiA → / → amn | shikimate transporter/AMP nucleosidase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,357,665 | G→A | 10.4% | G254G (GGG→GGA) | yfaD → | transposase_31 family protein |
| RA | 2,363,452 | G→A | 5.0% | A61V (GCC→GTC) ‡ | yfaY ← | inactive PncC family protein |
| RA | 2,363,453 | C→T | 6.2% | A61T (GCC→ACC) ‡ | yfaY ← | inactive PncC family protein |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 100% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,425,968 | T→G | 6.3% | intergenic (‑52/+38) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,425,971 | C→A | 7.1% | intergenic (‑55/+35) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,440,297 | C→A | 5.9% | intergenic (‑177/+88) | yfcJ ← / ← fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,594,273 | C→T | 5.9% | A529A (GCG→GCA) | tmcA ← | elongator methionine tRNA (ac4C34) acetyltransferase |
| RA | 2,776,500 | T→C | 5.4% | F39L (TTC→CTC) | yfjY → | CP4‑57 prophage; putative DNA repair protein |
| RA | 2,777,268 | T→A | 6.6% | F52I (TTT→ATT) | yfjZ → | CP4‑57 prophage; antitoxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,804,225 | G→A | 5.8% | A242T (GCC→ACC) | nrdF → | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein |
| RA | 2,804,528 | C→A | 14.2% | intergenic (+67/‑287) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein/glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 2,804,531 | G→T | 11.7% | intergenic (+70/‑284) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein/glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 2,913,039 | A→G | 6.1% | Y205H (TAC→CAC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,926,973 | T→C | 5.8% | A222A (GCT→GCC) | ygdH → | UPF0717 family protein |
| RA | 3,055,191 | A→G | 5.2% | L85P (CTT→CCT) | ygfB ← | UPF0149 family protein |
| RA | 3,096,826 | A→C | 16.3% | N49T (AAC→ACC) | rdgB → | dITP/XTP pyrophosphatase |
| RA | 3,146,762 | G→A | 5.3% | intergenic (‑25/+94) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,146,763 | T→C | 5.3% | intergenic (‑26/+93) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,180,506 | A→C | 5.6% | E29A (GAG→GCG) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,270,143 | C→T | 16.7% | intergenic (+541/+73) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,798,235 | A→T | 5.0% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,811,212 | C→T | 6.6% | intergenic (‑60/+38) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,216 | C→T | 6.2% | intergenic (‑64/+34) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,217 | G→C | 6.0% | intergenic (‑65/+33) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,218 | G→C | 6.1% | intergenic (‑66/+32) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,219 | A→G | 6.1% | intergenic (‑67/+31) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,223 | A→G | 6.1% | intergenic (‑71/+27) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,889,832 | T→C | 5.4% | L368S (TTG→TCG) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| JC JC | 3,890,075 | IS5 (–) +4 bp | 100% | coding (1346‑1349/1416 nt) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,927,123 | A→T | 6.3% | intergenic (‑120/‑32) | asnC ← / → asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| RA | 3,927,124 | T→G | 5.4% | intergenic (‑121/‑31) | asnC ← / → asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| RA | 3,927,125 | C→A | 6.1% | intergenic (‑122/‑30) | asnC ← / → asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| RA | 3,927,126 | A→T | 5.4% | intergenic (‑123/‑29) | asnC ← / → asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| RA | 3,967,705 | T→A | 6.3% | intergenic (+29/‑211) | rho → / → wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| RA | 4,083,214 | T→C | 6.1% | N870S (AAC→AGC) | fdoG ← | formate dehydrogenase‑O, large subunit |
| RA | 4,117,473 | A→G | 5.5% | R206R (CGT→CGC) | glpF ← | glycerol facilitator |
| RA | 4,187,214 | A→G | 92.7% | D622G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,231,004 | G→C | 6.0% | P217P (CCG→CCC) | rluF → | 23S rRNA pseudouridine(2604) synthase |
| RA | 4,231,006 | T→C | 5.9% | L218P (CTG→CCG) ‡ | rluF → | 23S rRNA pseudouridine(2604) synthase |
| RA | 4,231,007 | G→A | 6.6% | L218L (CTG→CTA) ‡ | rluF → | 23S rRNA pseudouridine(2604) synthase |
| RA | 4,231,009 | G→C | 6.5% | G219A (GGG→GCG) | rluF → | 23S rRNA pseudouridine(2604) synthase |
| RA | 4,235,465 | T→G | 5.4% | intergenic (+58/‑441) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,257,223 | T→A | 7.6% | F37I (TTC→ATC) ‡ | lexA → | transcriptional repressor of SOS regulon |
| RA | 4,257,224 | T→A | 7.5% | F37Y (TTC→TAC) ‡ | lexA → | transcriptional repressor of SOS regulon |
| RA | 4,257,226 | C→G | 7.3% | R38G (CGT→GGT) ‡ | lexA → | transcriptional repressor of SOS regulon |
| RA | 4,257,228 | T→A | 7.5% | R38R (CGT→CGA) ‡ | lexA → | transcriptional repressor of SOS regulon |
| RA | 4,257,229 | T→A | 7.4% | S39T (TCC→ACC) | lexA → | transcriptional repressor of SOS regulon |
| RA | 4,296,060 | C→T | 35.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,406,129 | T→C | 100% | intergenic (+144/‑61) | purA → / → nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,559,215 | C→A | 5.8% | L104L (CTG→CTT) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,586,614 | G→A | 5.3% | L50F (CTT→TTT) | hsdR ← | endonuclease R Type I restriction enzyme |
| JC JC | 4,640,551 | IS1 (–) +9 bp | 100% | intergenic (+9/‑383) | yjjY → / → yjtD | uncharacterized protein/putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 772986 | 774221 | 1236 | 33 [32] | [32] 33 | [cydA]–[cydX] | [cydA],cydB,[cydX] |
| * | * | ÷ | NC_000913 | 1037693 | 1039329 | 1637 | 34 [31] | [31] 33 | cbdA–[cbdB] | cbdA,[cbdB] |
| * | * | ÷ | NC_000913 | 2403938 | 2404662 | 725 | 33 [32] | [32] 33 | nuoB–[nuoA] | nuoB,[nuoA] |
| * | * | ÷ | NC_000913 | 3423733–3424234 | 3424550–3424238 | 5–818 | 33 [31] | [32] 33 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 45814 | 57 (0.720) | 3 (0.040) | 3/270 | NT | 5.1% | coding (8/1332 nt) | yaaU | putative MFS sugar transporter; membrane protein |
| ? | NC_000913 | = 45896 | 56 (0.730) | coding (90/1332 nt) | yaaU | putative MFS sugar transporter; membrane protein | |||||
| * | ? | NC_000913 | = 224374 | NA (NA) | 3 (0.040) | 3/264 | NT | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224403 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 270109 = | 68 (0.860) | 4 (0.050) | 4/262 | NT | 5.9% | coding (74/894 nt) | perR | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 270171 = | NA (NA) | coding (12/894 nt) | perR | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 271714 | NA (NA) | 3 (0.040) | 3/266 | NT | NA | noncoding (1174/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 280083 | NA (NA) | noncoding (153/181 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 274038 = | NA (NA) | 3 (0.040) | 3/266 | NT | NA | noncoding (1112/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274083 = | NA (NA) | noncoding (1067/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 4 (0.050) | 3/264 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 7 (0.090) | 5/264 | NT | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.050) | 4/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274692 = | NA (NA) | 3 (0.040) | 3/270 | NT | NA | noncoding (458/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274732 = | NA (NA) | noncoding (418/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 3 (0.040) | 3/258 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 316099 = | NA (NA) | 3 (0.040) | 3/262 | NT | NA | noncoding (871/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 316185 = | NA (NA) | noncoding (957/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 3 (0.040) | 3/264 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 4 (0.050) | 3/260 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381898 = | NA (NA) | 4 (0.050) | 3/266 | NT | NA | noncoding (639/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381933 = | NA (NA) | noncoding (674/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382276 | NA (NA) | 4 (0.050) | 3/266 | NT | NA | noncoding (1017/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382323 | NA (NA) | noncoding (1064/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 476120 | 70 (0.890) | 4 (0.050) | 4/276 | NT | 5.4% | coding (252/390 nt) | ybaZ | excision repair protein, alkyltransferase‑like protein ATL |
| ? | NC_000913 | = 476176 | 71 (0.910) | coding (196/390 nt) | ybaZ | excision repair protein, alkyltransferase‑like protein ATL | |||||
| * | ? | NC_000913 | 780511 = | 93 (1.180) | 6 (0.080) +AAAAAGT |
4/264 | NT | 8.3% | intergenic (+122/‑43) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys |
| ? | NC_000913 | 780843 = | 47 (0.600) | noncoding (1/76 nt) | lysW | tRNA‑Lys | |||||
| * | ? | NC_000913 | = 893448 | 65 (0.820) | 4 (0.050) | 4/272 | NT | 5.6% | intergenic (+15/‑336) | ybjN/potF | negative regulator of motility; multicopy suppressor of coaA(Ts)/putrescine ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 893475 | 71 (0.920) | intergenic (+42/‑309) | ybjN/potF | negative regulator of motility; multicopy suppressor of coaA(Ts)/putrescine ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1207790 = | 32 (0.410) | 26 (0.370) | 24/246 | NT | 45.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 34 (0.490) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 33 (0.420) | 25 (0.360) | 22/246 | NT | 44.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 34 (0.490) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 114 (1.490) | 86/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1311891 = | 75 (0.950) | 4 (0.050) | 3/266 | NT | 5.6% | coding (356/399 nt) | yciA | acyl‑CoA esterase |
| ? | NC_000913 | 1311920 = | 64 (0.850) | coding (327/399 nt) | yciA | acyl‑CoA esterase | |||||
| * | ? | NC_000913 | 1467910 = | NA (NA) | 7 (0.090) | 7/276 | NT | 7.2% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1582493 = | 90 (1.150) | coding (32/1683 nt) | ydeN | putative Ser‑type periplasmic non‑aryl sulfatase | |||||
| * | ? | NC_000913 | 1515702 = | 61 (0.770) | 4 (0.050) | 3/264 | NT | 6.7% | coding (125/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase |
| ? | NC_000913 | 1515732 = | 53 (0.710) | coding (155/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase | |||||
| * | ? | NC_000913 | 1523335 = | 60 (0.760) | 4 (0.050) | 3/262 | NT | 6.7% | coding (29/1062 nt) | yncE | ATP‑binding protein, periplasmic, function unknown |
| ? | NC_000913 | 1523396 = | 54 (0.730) | coding (90/1062 nt) | yncE | ATP‑binding protein, periplasmic, function unknown | |||||
| * | ? | NC_000913 | 1798794 = | 45 (0.570) | 3 (0.040) | 3/266 | NT | 6.0% | coding (149/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | NC_000913 | 1798908 = | 51 (0.680) | coding (35/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
| * | ? | NC_000913 | = 1948571 | 71 (0.900) | 5 (0.070) | 3/260 | NT | 6.3% | coding (62/453 nt) | nudB | dihydroneopterin triphosphate pyrophosphatase |
| ? | NC_000913 | = 1948599 | 82 (1.110) | coding (34/453 nt) | nudB | dihydroneopterin triphosphate pyrophosphatase | |||||
| * | ? | NC_000913 | = 2249685 | 79 (1.000) | 5 (0.060) | 3/272 | NT | 6.5% | intergenic (‑67/‑32) | yeiE/yeiH | putative DNA‑binding transcriptional regulator/UPF0324 family inner membrane protein |
| ? | NC_000913 | = 2249718 | 67 (0.870) | coding (2/1050 nt) | yeiH | UPF0324 family inner membrane protein | |||||
| * | ? | NC_000913 | = 2367683 | 64 (0.810) | 3 (0.040) | 3/262 | NT | 5.2% | coding (613/969 nt) | arnC | undecaprenyl phosphate‑L‑Ara4FN transferase |
| ? | NC_000913 | = 2367783 | 49 (0.660) | coding (713/969 nt) | arnC | undecaprenyl phosphate‑L‑Ara4FN transferase | |||||
| * | ? | NC_000913 | 2729475 = | 52 (0.660) | 5 (0.070) | 5/258 | NT | 9.4% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 48 (0.660) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2817942 | 46 (0.580) | 4 (0.060) | 4/238 | NT | 6.8% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | 2818492 = | 71 (1.050) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | NC_000913 | 2872242 = | 79 (1.000) | 4 (0.050) | 4/264 | NT | 5.3% | coding (249/711 nt) | ispD | 4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol synthase |
| ? | NC_000913 | 2872266 = | 68 (0.910) | coding (225/711 nt) | ispD | 4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol synthase | |||||
| * | ? | NC_000913 | = 2934477 | 69 (0.870) | 5 (0.070) | 4/258 | NT | 7.2% | coding (243/1317 nt) | fucP | L‑fucose transporter |
| ? | NC_000913 | = 2934506 | 65 (0.890) | coding (272/1317 nt) | fucP | L‑fucose transporter | |||||
| * | ? | NC_000913 | = 2961440 | 74 (0.940) | 4 (0.050) | 3/270 | NT | 5.1% | coding (989/3369 nt) | recC | exonuclease V (RecBCD complex), gamma chain |
| ? | NC_000913 | = 2961505 | 78 (1.020) | coding (924/3369 nt) | recC | exonuclease V (RecBCD complex), gamma chain | |||||
| * | ? | NC_000913 | 3267361 = | 96 (1.220) | 5 (0.070) | 3/258 | NT | 5.3% | intergenic (‑296/‑19) | tdcA/tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein |
| ? | NC_000913 | 3267401 = | 91 (1.240) | coding (22/219 nt) | tdcR | L‑threonine dehydratase operon activator protein | |||||
| * | ? | NC_000913 | 3295753 = | 87 (1.100) | 5 (0.070) | 4/264 | NT | 6.2% | coding (360/396 nt) | yraN | UPF0102 family protein |
| ? | NC_000913 | 3295787 = | 70 (0.930) | coding (394/396 nt) | yraN | UPF0102 family protein | |||||
| * | ? | NC_000913 | 3905636 = | 80 (1.010) | 4 (0.060) | 3/248 | NT | 5.3% | intergenic (‑39/+95) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon |
| ? | NC_000913 | 3905688 = | 72 (1.020) | intergenic (‑91/+43) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon | |||||
| * | ? | NC_000913 | 4035239 = | NA (NA) | 4 (0.050) | 3/274 | NT | 21.3% | intergenic (+86/‑292) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4035278 = | 15 (0.190) | intergenic (+125/‑253) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||