breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
RA 1,152,159 T→G F74C (TTC→TGC)  fabF → beta‑ketoacyl‑[acyl carrier protein] synthase II
MC JC 1,397,381 Δ13,756 bp [ynaJ]–[ttcA] 16 genes
RA 1,618,806 Δ1 bp coding (103/666 nt) marC ← inner membrane protein MarC
MC JC 1,978,503 Δ776 bp insB‑5–insA‑5 insB‑5, insA‑5
RA 2,173,363 Δ2 bp pseudogene (915‑916/1358 nt) gatC ← galactitol‑specific PTS enzyme IIC component
RA 3,560,455 +G pseudogene (151/758 nt) glpR ← DNA‑binding transcriptional repressor GlpR
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423714–3424234 3424591–3424238 5–878 99 [97] [98] 100 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =13 (0.070)123 (0.720) 94/260 1.2 88.0% coding (290/630 nt) ycfK e14 prophage; protein StfP
?NC_000913 1209619 = 22 (0.130)pseudogene (37/537 nt) stfE e14 prophage; putative side tail fiber protein fragment
* ? NC_000913 = 120780513 (0.070)115 (0.670) 100/260 0.9 87.3% coding (305/630 nt) ycfK e14 prophage; protein StfP
?NC_000913 = 1209602 22 (0.130)pseudogene (54/537 nt) stfE e14 prophage; putative side tail fiber protein fragment
* ? NC_000913 = 12994980 (0.000)299 (1.600) 180/284 0.0 100% intergenic (+253/‑33) ychE/insH21 putative inner membrane protein/IS5 transposase and trans‑activator
?NC_000913 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein