breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
MC JC 1,397,381 Δ13,756 bp [ynaJ]–[ttcA] 16 genes
MC JC 1,618,499 Δ7 bp coding (404‑410/666 nt) marC ← inner membrane protein MarC
MC JC 1,978,503 Δ776 bp insB‑5–insA‑5 insB‑5, insA‑5
RA 2,173,363 Δ2 bp pseudogene (915‑916/1358 nt) gatC ← galactitol‑specific PTS enzyme IIC component
RA 2,713,364 G→A D157N (GAC→AAC)  srmB → ATP‑dependent RNA helicase SrmB
RA 3,560,455 +G pseudogene (151/758 nt) glpR ← DNA‑binding transcriptional repressor GlpR
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423698–3424234 3424644–3424238 5–947 143 [141] [141] 144 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =37 (0.140)203 (0.870) 128/260 0.7 82.4% coding (290/630 nt) ycfK e14 prophage; protein StfP
?NC_000913 1209619 = 54 (0.230)pseudogene (37/537 nt) stfE e14 prophage; putative side tail fiber protein fragment
* ? NC_000913 = 120780538 (0.140)171 (0.730) 120/260 1.1 79.6% coding (305/630 nt) ycfK e14 prophage; protein StfP
?NC_000913 = 1209602 54 (0.230)pseudogene (54/537 nt) stfE e14 prophage; putative side tail fiber protein fragment
* ? NC_000913 = 12994980 (0.000)368 (1.440) 207/284 0.0 100% intergenic (+253/‑33) ychE/insH21 putative inner membrane protein/IS5 transposase and trans‑activator
?NC_000913 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein