New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3416716 =	152 (0.900)	4 (0.000) +GCTCTCCTGAGTAGGACAAAG	4/208	25.7	0.47%	intergenic (+163/+66)	yhdZ/rrfF	putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon
	?	KX077536	33 =	1903 (0.240)					intergenic (–/‑1066)	–/unknown	–/BLA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTATCTGTTGTTTGTCGGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3416740‑3416716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAACGGGGCGGAGATTTCCTGGAAGATGCC  >  KX077536/33‑154                          |||||||||||||||||||||                                                                                                                           TTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAGAGCCGCCGCCCTATACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTTGGTCGTTCGACTGCGGCGAGCG                                            <  2:468310/126‑1     ATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAGCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAA                                        <  2:3288974/126‑1      TCTGTTGTTTGTCGGTGTACGCTCTCCTGAGTAGGANAAAGCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCGACGCTCGGTCGTTCGACTGCGGCAAGCGGAAAT                                       <  2:2661121/126‑1            tTTTGTCGGTGAACGCACTCCGGAGTAGGACAAAGCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCCCTCACTGCCTCGCTACGCTCGGTCGCTCGACGGCGGCGAGCGGAAATGGCTTA                                 <  2:4507/125‑1                                  GAGTAGGACAAAGCAGCCGCCCTAGACCTAGGGATATATCCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAACGGGGCGGAGATTTCCTG           >  2:1098268/1‑126                                      AGGACAAAGCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAACGGGGCGGAGATTTCCTGGAAG       <  1:2735375/126‑1                                           AAAGCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAACGGGGCGGAGATTTCCTGGAAGATGCC  <  2:1962592/126‑1                          |||||||||||||||||||||                                                                                                                           TTTTATCTGTTGTTTGTCGGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3416740‑3416716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAACGGGGCGGAGATTTCCTGGAAGATGCC  >  KX077536/33‑154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.