BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP009273	2,400,028	Δ9 bp	coding (85‑93/939 nt)	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	2400028	2400036	9	217 [0]	[0] 218	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2400027	0 (0.000)	198 (1.260)	127/234	0.0	100%	coding (94/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
*	?	CP009273	2400037 =	0 (0.000)	198 (1.260)	127/234	0.0	100%	coding (84/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes

Only 100 of 217 total aligned reads displayed.

TTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGC  >  CP009273/2399902‑2400152

ttGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGC                                                                                                                               <  1:1380164‑M1/126‑1 (MQ=255)

  gAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaa                                                                                                                             <  2:172285‑M1/126‑3 (MQ=255)

  gAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaa                                                                                                                             >  1:117658‑M1/1‑124 (MQ=255)

        cATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgt                                                                                                                       >  1:255751‑M1/1‑118 (MQ=255)

        cATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgt                                                                                                                       >  1:339587‑M1/1‑118 (MQ=255)

        cATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCACACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgt                                                                                                                       <  1:2158464‑M1/126‑9 (MQ=255)

         aTGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgtt                                                                                                                      <  2:2949902‑M1/126‑10 (MQ=255)

         aTGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgtt                                                                                                                      <  2:699073‑M1/126‑10 (MQ=255)

          tGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCGCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtattc                                                                                                                     >  1:2645140‑M1/1‑116 (MQ=255)

          tGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttc                                                                                                                     >  1:275295‑M1/1‑116 (MQ=255)

           gTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttca                                                                                                                    >  2:921280‑M1/1‑115 (MQ=255)

            ttCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcag                                                                                                                   <  1:785127‑M1/126‑13 (MQ=255)

             tCAGTTAACAGTTTGTTGCGACCGCGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcaga                                                                                                                  >  1:2622046‑M1/1‑113 (MQ=255)

              cAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagat                                                                                                                 <  1:1731667‑M1/126‑15 (MQ=255)

              cAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTCTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagat                                                                                                                 <  2:2087663‑M1/126‑15 (MQ=255)

               aGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatc                                                                                                                <  1:2913185‑M1/126‑16 (MQ=255)

                gTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcg                                                                                                               >  2:354664‑M1/1‑110 (MQ=255)

                   aaCAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggca                                                                                                            >  1:1420602‑M1/1‑107 (MQ=255)

                      aGTTTGTTGCAACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaaca                                                                                                         >  2:397385‑M1/1‑104 (MQ=255)

                       gTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacag                                                                                                        <  2:1834726‑M1/126‑24 (MQ=255)

                        tttGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagc                                                                                                       >  1:2334863‑M1/1‑102 (MQ=255)

                        tttGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagc                                                                                                       <  1:1443065‑M1/126‑25 (MQ=255)

                         ttgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagca                                                                                                      <  1:2026229‑M1/126‑26 (MQ=255)

                         ttgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagca                                                                                                      <  2:677791‑M1/126‑26 (MQ=255)

                            ttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaaca                                                                                                   <  2:790720‑M1/126‑29 (MQ=255)

                             tgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaa                                                                                                  >  2:3179793‑M1/1‑97 (MQ=255)

                              gCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaa                                                                                                 <  2:488075‑M1/126‑31 (MQ=255)

                                  ccGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgtt                                                                                             <  2:725895‑M1/126‑35 (MQ=255)

                                    gTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttct                                                                                           <  1:1488313‑M1/126‑37 (MQ=255)

                                      gACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca                                                                                         <  2:1631590‑M1/126‑39 (MQ=255)

                                      gACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca                                                                                         >  1:997373‑M1/1‑88 (MQ=255)

                                       aCGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcag                                                                                        >  2:28072‑M1/1‑87 (MQ=255)

                                         gAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaacgtgttcagatcggcaacagcaacaaatgttctcagca                                                                                      >  2:1429962‑M1/1‑85 (MQ=255)

                                         gAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagca                                                                                      <  1:201830‑M1/126‑42 (MQ=255)

                                          aGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcag                                                                                     <  2:614235‑M1/126‑43 (MQ=255)

                                            cGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagat                                                                                   <  2:2282707‑M1/126‑45 (MQ=255)

                                              aaCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcg                                                                                 >  2:1224716‑M1/1‑80 (MQ=255)

                                              aaCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcg                                                                                 >  1:2966384‑M1/1‑80 (MQ=255)

                                              aaCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcg                                                                                 <  1:631500‑M1/126‑47 (MQ=255)

                                              aaCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcg                                                                                 >  1:1968711‑M1/1‑80 (MQ=255)

                                              aaCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcg                                                                                 <  2:2717709‑M1/126‑47 (MQ=255)

                                               aCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcga                                                                                >  2:2107485‑M1/1‑79 (MQ=255)

                                               aCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcga                                                                                <  1:937149‑M1/126‑48 (MQ=255)

                                                cAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgag                                                                               <  2:255751‑M1/126‑49 (MQ=255)

                                                cAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgag                                                                               <  1:2081864‑M1/126‑49 (MQ=255)

                                                cAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgag                                                                               <  1:2042233‑M1/126‑49 (MQ=255)

                                                   ttCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtc                                                                            <  1:1077913‑M1/126‑52 (MQ=255)

                                                      tttCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgag                                                                         >  2:560330‑M1/1‑72 (MQ=255)

                                                         cccAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtt                                                                      <  2:1576524‑M1/126‑58 (MQ=255)

                                                           cAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaa                                                                    >  1:1778797‑M1/1‑67 (MQ=255)

                                                           cAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgag                                                                               >  1:604097‑M1/1‑67 (MQ=255)

                                                            aaCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcnaggttaat                                                                   <  1:2695027‑M1/126‑61 (MQ=255)

                                                              cGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaatta                                                                 <  1:356155‑M1/126‑63 (MQ=255)

                                                               gAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattat                                                                >  2:1260069‑M1/1‑63 (MQ=255)

                                                                 gttgttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGACTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcg                                                              <  2:2641343‑M1/126‑66 (MQ=255)

                                                                  ttgttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcgg                                                             <  1:194874‑M1/126‑67 (MQ=255)

                                                                    gttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggac                                                           >  2:2172076‑M1/1‑58 (MQ=255)

                                                                    gttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggac                                                           >  1:3089592‑M1/1‑58 (MQ=255)

                                                                      tCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacga                                                         >  1:1266823‑M1/1‑56 (MQ=255)

                                                                       ccAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgat                                                        <  2:73997‑M1/126‑72 (MQ=255)

                                                                        cAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatt                                                       <  1:2810218‑M1/126‑73 (MQ=255)

                                                                        cAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatt                                                       >  2:1743517‑M1/1‑54 (MQ=255)

                                                                         aGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgattt                                                      >  1:702814‑M1/1‑53 (MQ=255)

                                                                          gACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCCGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttg                                                     <  1:2199616‑M1/126‑75 (MQ=255)

                                                                          gACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttg                                                     >  1:2552283‑M1/1‑52 (MQ=255)

                                                                           aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgc                                                    >  1:1628202‑M1/1‑51 (MQ=255)

                                                                            cGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgca                                                   >  2:2375728‑M1/1‑50 (MQ=255)

                                                                             gCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcac                                                  >  1:970679‑M1/1‑49 (MQ=255)

                                                                              cTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcact                                                 <  2:192441‑M1/126‑79 (MQ=255)

                                                                              cTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcact                                                 <  1:2881043‑M1/126‑79 (MQ=255)

                                                                               tGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcactt                                                <  2:2764134‑M1/126‑80 (MQ=255)

                                                                                gCATTCGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcactta                                               >  2:2647956‑M1/1‑46 (MQ=255)

                                                                                   tttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatgggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatca                                            <  2:2014844‑M1/126‑84 (MQ=255)

                                                                                   tttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatca                                            <  1:554739‑M1/126‑84 (MQ=255)

                                                                                   tttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatca                                            <  1:3295701‑M1/126‑84 (MQ=255)

                                                                                   tttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatca                                            <  1:1373124‑M1/126‑84 (MQ=255)

                                                                                     tGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcata                                          <  1:3355021‑M1/126‑86 (MQ=255)

                                                                                     tGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcata                                          <  1:3158177‑M1/126‑86 (MQ=255)

                                                                                      gCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatat                                         <  1:452604‑M1/126‑87 (MQ=255)

                                                                                         gACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatatt                                      <  2:1407895‑M1/126‑90 (MQ=255)

                                                                                          aCTTACGGCGGACTGAGTACGACACACACCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggactatttgcacttatcatatatta                                     <  2:5171‑M1/126‑91 (MQ=255)

                                                                                             tACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatca                                  <  2:3308856‑M1/126‑94 (MQ=255)

                                                                                                   ggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttact                            >  1:1158871‑M1/1‑27 (MQ=255)

                                                                                                      cTGAGTACGACACACAGCGGCAGCaaaagcgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggc                         <  2:28483‑M1/126‑103 (MQ=255)

                                                                                                       tGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcg                        >  2:1011238‑M1/1‑23 (MQ=255)

                                                                                                       tGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcg                        <  1:1147072‑M1/126‑104 (MQ=255)

                                                                                                        gAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcgg                       <  2:1346937‑M1/126‑105 (MQ=255)

                                                                                                           tACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctc                    >  1:755274‑M1/1‑19 (MQ=255)

                                                                                                                 acacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactg              >  2:2110534‑M1/1‑13 (MQ=255)

                                                                                                                 acacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactg              >  2:3217562‑M1/1‑13 (MQ=255)

                                                                                                                   acaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgag            >  2:943168‑M1/1‑11 (MQ=255)

                                                                                                                   acaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgag            >  2:2522720‑M1/1‑11 (MQ=255)

                                                                                                                     aGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgagct          <  2:1048597‑M1/126‑118 (MQ=255)

                                                                                                                        ggCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgagctggt       >  2:3124160‑M1/1‑6 (MQ=255)

                                                                                                                         gcagcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgagctggtt      <  2:2957728‑M1/126‑122 (MQ=255)

                                                                                                                           agcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtaaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgagctggttaa    >  1:2176400‑M1/1‑3 (MQ=255)

                                                                                                                            gcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtttattatcggacgatttgcacttatcatatattaccacttactggcggctcatactgagctggttaat   >  2:2799449‑M1/1‑2 (MQ=255)

                                                                                                                            gcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgagctggttaat   >  2:1158069‑M1/1‑2 (MQ=255)

                                                                                                                            gcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgagctggttaat   <  1:3345114‑M1/126‑125 (MQ=255)

                                                                                                                             caaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttactggcggctcatactgagctggttaatg  <  1:1128174‑M1/126‑126 (MQ=255)

TTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGC  >  CP009273/2399902‑2400152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`