mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 778,320 | T→G | V194G (GTC→GGC) | tolB → | Tol‑Pal system periplasmic protein TolB |
| RA | 876,250 | A→G | R306G (AGA→GGA) | dgcI → | putative diguanylate cyclase DgcI |
| RA | 1,479,026 | A→G | K267K (AAA→AAG) | ynbB → | putative CDP‑diglyceride synthase |
| RA | 1,491,244 | T→C | F115L (TTT→CTT) | cybB → | cytochrome b561 |
| JC JC | 1,873,031 | IS1 (–) +9 bp | coding (991‑999/1491 nt) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 2,168,456 | T→C | intergenic (‑150/‑256) | yegR ← / → yegS | uncharacterized protein YegR/lipid kinase |
| RA | 2,503,951 | T→C | T179A (ACT→GCT) | fryA ← | putative PTS multiphosphoryl transfer protein FryA |
| RA | 2,753,814 | G→A | T70T (ACG→ACA) | bamE → | outer membrane protein assembly factor BamE |
| RA | 2,762,142 | G→A | P467S (CCA→TCA) | abpB ← | CP4‑57 prophage; putative helicase YfjK |
| RA | 3,190,692 | Δ1 bp | coding (61/1065 nt) | yqiI → | putative fimbrial protein YqiI |
| RA | 3,255,401 | G→A | S417S (AGC→AGT) | cyuA ← | putative L‑cysteine desulfidase CyuA |
| RA | 3,327,269 | T→C | T132T (ACA→ACG) | rlmE ← | 23S rRNA 2'‑O‑ribose U2552 methyltransferase |
| RA | 3,370,378 | T→C | Y220C (TAC→TGC) | nanE ← | putative N‑acetylmannosamine‑6‑phosphate epimerase |
| RA | 3,584,362 | A→G | intergenic (+53/‑42) | yrhA → / → yrhD | putative uncharacterized protein YrhA/uncharacterized protein YrhD |
| RA | 3,965,557 | (T)8→7 | coding (74/1266 nt) | rhlB ← | ATP‑dependent RNA helicase RhlB |
| RA | 4,072,114 | C→T | A180T (GCC→ACC) | yihT ← | 6‑deoxy‑6‑sulfofructose‑1‑phosphate aldolase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,447,854 | A→G | D1248G (GAC→GGC) | tamB → | translocation and assembly module subunit TamB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 361166 | 361943 | 778 | 1731 [1717] | [1712] 1742 | lacA–[lacY] | lacA,[lacY] |
| * | * | ÷ | NC_000913 | 2856964 | 2857095 | 132 | 1728 [1706] | [0] 2645 | [mutS] | [mutS] |
| * | * | ÷ | NC_000913 | 3423673–3424234 | 3424604–3424238 | 5–932 | 1731 [1719] | [1721] 1744 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 70046 = | 2703 (1.040) | 2575 (1.010) | 289/274 | -0.0 | 66.1% | coding (3/1701 nt) | araB | ribulokinase |
| ? | NC_000913 | 2857096 = | 0 (0.000) | coding (4/2562 nt) | mutS | DNA mismatch repair protein MutS | |||||
| * | ? | NC_000913 | 1207790 = | 1609 (0.620) | 477 (0.210) | 210/248 | 1.2 | 23.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 1754 (0.760) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 1608 (0.620) | 545 (0.240) | 231/248 | 0.0 | 25.5% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 1754 (0.760) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4542682 = | 1160 (0.450) | 1916 (0.790) | 272/262 | 0.0 | 62.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 1205 (0.500) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 1160 (0.450) | 1765 (0.730) | 276/262 | 0.0 | 60.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 1205 (0.500) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||