mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 150,030 | Δ1 bp | coding (924/1239 nt) | yadC ← | fimbrial tip‑adhesin YadC |
| RA | 358,922 | A→G | S42G (AGC→GGC) | cynT → | carbonic anhydrase 1 |
| RA | 834,281 | G→A | R404R (CGG→CGA) | dinG → | ATP‑dependent DNA helicase DinG |
| RA | 1,004,401 | A→G | D152G (GAC→GGC) | ycbF → | putative fimbrial chaperone YcbF |
| RA | 1,097,643 | A→G | noncoding (10/88 nt) | serX ← | tRNA‑Ser |
| JC JC | 1,873,031 | IS1 (–) +9 bp | coding (991‑999/1491 nt) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 1,937,482 | T→C | R277R (CGT→CGC) | yebK → | DNA‑binding transcriptional repressor YebK |
| RA | 1,978,440 | (G)6→7 | intergenic (‑243/+78) | flhD ← / ← insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| RA | 2,018,530 | (C)6→7 | coding (145/1128 nt) | fliK → | flagellar hook‑length control protein |
| RA | 2,103,657 | T→C | T285A (ACA→GCA) | wbbK ← | putative lipopolysaccharide biosynthesis protein |
| RA | 2,490,503 | A→G | V483A (GTT→GCT) | oxc ← | oxalyl‑CoA decarboxylase |
| RA | 2,537,018 | T→C | S74G (AGC→GGC) | pdxK ← | pyridoxal kinase I |
| RA | 2,893,438 | T→C | L261P (CTT→CCT) | ygcN → | putative oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 2,967,678 | G→A | R253W (CGG→TGG) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 3,206,963 | G→A | P167P (CCG→CCA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,238,249 | C→T | I313I (ATC→ATT) | ygjR → | putative oxidoreductase YgjR |
| RA | 3,254,452 | A→G | Q45R (CAG→CGG) | yhaK → | bicupin‑related protein |
| RA | 3,457,805 | A→G | N477D (AAC→GAC) | gspD → | Type II secretion system protein GspD |
| RA | 3,584,362 | A→G | intergenic (+53/‑42) | yrhA → / → yrhD | putative uncharacterized protein YrhA/uncharacterized protein YrhD |
| RA | 3,944,117 | C→T | noncoding (414/2904 nt) | rrlC → | 23S ribosomal RNA |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 361149 | 361953 | 805 | 1857 [1845] | [1824] 1849 | lacA–[lacY] | lacA,[lacY] |
| * | * | ÷ | NC_000913 | 2856941 | 2857095 | 155 | 1855 [1842] | [0] 2415 | [mutS] | [mutS] |
| * | * | ÷ | NC_000913 | 3423507–3423551 | 3424616–3423658 | 108–1110 | 1855 [1848] | [1830] 1858 | [rrfF]–[rrlD] | [rrfF],thrV,rrfD,[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 70046 = | 2375 (0.980) | 2338 (0.990) | 291/276 | 0.0 | 66.8% | coding (3/1701 nt) | araB | ribulokinase |
| ? | NC_000913 | 2857096 = | 0 (0.000) | coding (4/2562 nt) | mutS | DNA mismatch repair protein MutS | |||||
| * | ? | NC_000913 | 4542682 = | 1638 (0.680) | 1152 (0.510) | 271/264 | -0.0 | 41.9% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 1667 (0.740) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 1641 (0.680) | 1058 (0.470) | 259/264 | 0.0 | 39.8% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 1667 (0.740) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||