mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 354,244 | T→C | S513S (AGT→AGC) | prpE → | propionyl‑CoA synthetase |
| RA | 1,034,793 | C→T | H514Y (CAC→TAC) | hyaB → | hydrogenase 1 large subunit |
| RA | 1,297,592 | A→G | L177P (CTG→CCG) | adhE ← | aldehyde‑alcohol dehydrogenase |
| RA | 1,370,044 | (T)9→8 | intergenic (+41/‑172) | pspE → / → ycjM | thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase |
| JC JC | 1,873,031 | IS1 (–) +9 bp | coding (991‑999/1491 nt) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 1,937,940 | G→A | A98T (GCC→ACC) | pykA → | pyruvate kinase II |
| RA | 1,979,176 | T→C | T14A (ACT→GCT) | insA‑5 ← | IS1 protein InsA |
| RA | 2,213,249 | A→G | F466L (TTT→CTT) | btsS ← | high‑affinity pyruvate receptor |
| RA | 3,584,362 | A→G | intergenic (+53/‑42) | yrhA → / → yrhD | putative uncharacterized protein YrhA/uncharacterized protein YrhD |
| RA | 3,638,367 | T→C | I242I (ATT→ATC) | pitA → | metal phosphate:H(+) symporter PitA |
| RA | 3,952,835 | A→G | T118A (ACC→GCC) | ilvE → | branched‑chain‑amino‑acid aminotransferase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,816 | A→G | intergenic (‑75/+583) | yjdN ← / ← yjdM | conserved protein YjdN/conserved protein YjdM |
| RA | 4,361,448 | (A)8→7 | coding (487/1539 nt) | cadC ← | DNA‑binding transcriptional activator CadC |
| RA | 4,549,187 | C→T | A127V (GCG→GTG) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 361136 | 361966 | 831 | 1697 [1665] | [1665] 1677 | [cynX]–[lacY] | [cynX],lacA,[lacY] |
| * | * | ÷ | NC_000913 | 2856930 | 2857095 | 166 | 1685 [1665] | [0] 2100 | [mutS] | [mutS] |
| * | * | ÷ | NC_000913 | 3423453–3423551 | 3424627–3424238 | 688–1175 | 1677 [1668] | [1664] 1686 | [rrfF]–[rrlD] | [rrfF],thrV,rrfD,[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 70046 = | 2067 (1.000) | 2049 (1.010) | 290/276 | 0.0 | 67.0% | coding (3/1701 nt) | araB | ribulokinase |
| ? | NC_000913 | 2857096 = | 0 (0.000) | coding (4/2562 nt) | mutS | DNA mismatch repair protein MutS | |||||
| * | ? | NC_000913 | 1207790 = | 352 (0.170) | 1554 (0.850) | 261/250 | 0.0 | 82.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 357 (0.200) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 352 (0.170) | 1512 (0.830) | 262/250 | 0.0 | 81.9% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 357 (0.200) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4542682 = | 1009 (0.490) | 1308 (0.680) | 264/264 | -0.0 | 56.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 1077 (0.560) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 1012 (0.490) | 1251 (0.650) | 266/264 | -0.0 | 55.3% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 1077 (0.560) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||