mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 537,409 | A→G | D275G (GAT→GGT) | glxR → | tartronate semialdehyde reductase 2 |
| RA | 1,119,518 | (T)7→6 | coding (1069/1119 nt) | solA ← | N‑methyl‑L‑tryptophan oxidase |
| RA | 1,519,894 | C→T | H290Y (CAC→TAC) | curA → | NADPH‑dependent curcumin/dihydrocurcumin reductase |
| RA | 1,590,867 | T→C | Y437C (TAC→TGC) | hipA ← | serine/threonine kinase HipA |
| RA | 1,784,419 | T→C | C481C (TGT→TGC) | fadK → | short chain acyl‑CoA synthetase |
| RA | 1,799,160 | (A)7→8 | intergenic (‑218/+66) | pheS ← / ← pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| JC JC | 1,873,031 | IS1 (–) +9 bp | coding (991‑999/1491 nt) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 2,100,214 | T→C | N352S (AAC→AGC) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
| RA | 2,319,321 | G→A | Q186* (CAA→TAA) | rcsC ← | sensory histidine kinase RcsC |
| RA | 2,751,803 | A→G | A3A (GCA→GCG) | recN → | DNA repair protein RecN |
| RA | 2,861,780 | A→G | G117G (GGA→GGG) | ygbJ → | putative L‑threonate dehydrogenase |
| RA | 2,999,680 | (G)7→8 | coding (212/756 nt) | ygeR ← | LysM domain‑containing putative peptidase lipoprotein YgeR |
| RA | 3,584,362 | A→G | intergenic (+53/‑42) | yrhA → / → yrhD | putative uncharacterized protein YrhA/uncharacterized protein YrhD |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,542,725 | (T)6→5 | intergenic (+92/‑390) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,543,523 | G→A | D137N (GAT→AAT) | fimA → | type 1 fimbriae major subunit |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 361186 | 361931 | 746 | 543 [527] | [527] 536 | lacA–[lacY] | lacA,[lacY] |
| * | * | ÷ | NC_000913 | 2856968 | 2857095 | 128 | 539 [532] | [0] 944 | [mutS] | [mutS] |
| * | * | ÷ | NC_000913 | 3423690–3424234 | 3424603–3424238 | 5–914 | 539 [532] | [530] 545 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 70046 = | 864 (0.940) | 927 (1.030) | 271/276 | 0.0 | 68.7% | coding (3/1701 nt) | araB | ribulokinase |
| ? | NC_000913 | 2857096 = | 0 (0.000) | coding (4/2562 nt) | mutS | DNA mismatch repair protein MutS | |||||
| * | ? | NC_000913 | 1207790 = | 154 (0.170) | 568 (0.690) | 215/250 | 0.5 | 80.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 142 (0.170) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 154 (0.170) | 598 (0.730) | 217/250 | 0.4 | 81.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 142 (0.170) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||