mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 275,628 | A→G | T102A (ACC→GCC) | mmuP → | S‑methyl‑L‑methionine transporter |
| RA | 310,057 | (G)6→7 | intergenic (‑31/+27) | ecpB ← / ← ecpA | putative fimbrial chaperone EcpB/common pilus major subunit |
| RA | 380,022 | (G)10→11 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 402,328 | C→T | S194S (AGC→AGT) | phoA → | alkaline phosphatase |
| RA | 421,791 | C→T | P269L (CCG→CTG) | proY → | putative transporter ProY |
| RA | 475,669 | A→G | S97S (TCA→TCG) | ybaY → | PF09619 family lipoprotein YbaY |
| RA | 1,427,939 | T→C | N263S (AAC→AGC) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,496,387 | A→G | D367G (GAC→GGC) | ydcJ → | DUF1338 domain‑containing protein YdcJ |
| RA | 1,594,132 | (C)8→7 | pseudogene (3955/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| JC JC | 1,873,031 | IS1 (–) +9 bp | coding (991‑999/1491 nt) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 2,078,126 | T→C | L63L (TTG→CTG) | yeeW → | CP4‑44 prophage; putative uncharacterized protein YeeW |
| RA | 2,160,750 | G→A | A789T (GCC→ACC) | mdtC → | multidrug efflux pump RND permease subunit MdtC |
| RA | 2,992,049 | C→A | intergenic (+290/‑45) | ygeG → / → ygeH | TPR repeat‑containing putative chaperone YgeG/putative transcriptional regulator YgeH |
| RA | 3,441,780 | T→C | I107V (ATC→GTC) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,584,362 | A→G | intergenic (+53/‑42) | yrhA → / → yrhD | putative uncharacterized protein YrhA/uncharacterized protein YrhD |
| RA | 3,931,861 | A→G | G182G (GGA→GGG) | kup → | K(+):H(+) symporter Kup |
| RA | 4,015,479 | A→G | Y231H (TAC→CAC) | ysgA ← | putative dienelactone hydrolase |
| RA | 4,215,187 | A→G | H303R (CAC→CGC) | metA → | homoserine O‑succinyltransferase |
| RA | 4,275,871 | A→G | Y134C (TAC→TGC) | pdeC → | c‑di‑GMP phosphodiesterase PdeC |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,384,025 | G→A | A63T (GCT→ACT) | yjeM → | putative transporter YjeM |
| RA | 4,518,040 | A→G | C66R (TGC→CGC) | fecI ← | RNA polymerase sigma factor FecI |
| RA | 4,542,725 | (T)6→5 | intergenic (+92/‑390) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,549,187 | C→T | A127V (GCG→GTG) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 361191 | 361922 | 732 | 357 [349] | [342] 350 | lacA | lacA |
| * | * | ÷ | NC_000913 | 2856981 | 2857095 | 115 | 354 [347] | [1] 647 | [mutS] | [mutS] |
| * | * | ÷ | NC_000913 | 3423700–3424234 | 3424589–3424238 | 5–890 | 351 [347] | [345] 353 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 70046 = | 680 (1.030) | 619 (0.950) | 240/274 | 0.0 | 65.0% | coding (3/1701 nt) | araB | ribulokinase |
| ? | NC_000913 | 2857096 = | 1 (0.000) | coding (4/2562 nt) | mutS | DNA mismatch repair protein MutS | |||||