| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 486,122 | IS1 (+) +8 bp | coding (362‑369/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 81 (1.520) | 34/134 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 486122 = | 0 (0.000) | coding (362/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 78 (1.480) | 28/132 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 486129 | 0 (0.000) | coding (369/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
Only 100 of 151 total aligned reads displayed.
TGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAA > NC_000913/486062‑486196 | gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATg < 1:2100591‑M2/8‑1 (MQ=255) agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCtgt < 1:1917524‑M2/13‑1 (MQ=255) agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCtgt < 1:3302752‑M2/13‑1 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCtgtt > 1:1635640‑M2/55‑68 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCtgtt < 1:4030938‑M2/14‑1 (MQ=255) gaaCTGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgc > 1:380916‑M2/1‑60 (MQ=255) atcgggcattatctgaagataaaacactatcaataaattggagtcattaccGAGAAATGGCAGTtgtg < 1:2500895‑M2/17‑1 (MQ=255) aCGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctg < 1:2313929‑M2/68‑11 (MQ=255) aCGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctg < 1:2822080‑M2/68‑11 (MQ=255) aCGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctg < 1:1950844‑M2/68‑11 (MQ=255) aCGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctg < 1:376042‑M2/68‑11 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTCTGCaa > 1:2680‑M2/49‑68 (MQ=255) ggCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgcc > 1:3417902‑M2/1‑56 (MQ=255) ggCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgcc < 1:4153888‑M2/68‑13 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGGGcaaa > 1:1479871‑M2/48‑67 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGGTGTGCAACAg > 1:2294779‑M2/46‑68 (MQ=255) tCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaact > 1:1130614‑M2/1‑52 (MQ=255) tCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaact > 1:434172‑M2/1‑52 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAgg < 1:506763‑M2/24‑1 (MQ=255) ttatctgaacataaaacactatcaataagttttagtcattaccGAGAAATGGCTGTTGTGCAACAGGc < 1:2731820‑M2/25‑1 (MQ=255) gATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaactta > 1:1866613‑M2/1‑50 (MQ=255) gATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaactta > 1:849953‑M2/1‑50 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGcaca > 1:2329877‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGcaca > 1:1726825‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGcaca > 1:221375‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGcaca > 1:3209934‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGcaca > 1:563854‑M2/41‑68 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACaa < 1:1290289‑M2/29‑1 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACaa < 1:1320622‑M2/29‑1 (MQ=255) tgaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAAc < 1:888239‑M2/30‑1 (MQ=255) attGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactga > 1:2418387‑M2/1‑46 (MQ=255) attGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactga < 1:2212590‑M2/68‑23 (MQ=255) attGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactga > 1:3517868‑M2/1‑46 (MQ=255) attGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactga > 1:731354‑M2/1‑46 (MQ=255) attGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactga > 1:1123520‑M2/1‑46 (MQ=255) gaacataaaccactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACg < 1:3650808‑M2/31‑1 (MQ=255) gaacataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACg < 1:1979922‑M2/31‑1 (MQ=255) cagcataaaacactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACg < 1:2021246‑M2/31‑1 (MQ=255) gATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgattt < 1:963930‑M2/68‑26 (MQ=255) ggAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:3064625‑M2/1‑40 (MQ=255) ggAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:2691399‑M2/1‑40 (MQ=255) ggAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:3549093‑M2/1‑40 (MQ=255) ggAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:1281563‑M2/1‑40 (MQ=255) ggAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:1762413‑M2/1‑40 (MQ=255) ggAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagt > 1:1985504‑M2/1‑40 (MQ=255) agaTTATATTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgt > 1:3684677‑M2/1‑38 (MQ=255) aaacactatcaataagttggaggcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAAtctc < 1:3709852‑M2/38‑1 (MQ=255) acactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCtctg > 1:1410421‑M2/29‑68 (MQ=255) cactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCtctgt > 1:2135844‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCtctgt < 1:3974119‑M2/41‑1 (MQ=255) atTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatgg < 1:2344974‑M2/68‑38 (MQ=255) atTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatgg < 1:2993007‑M2/68‑38 (MQ=255) atTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatgg < 1:2103724‑M2/68‑38 (MQ=255) atTCCACAAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgactg < 1:3945471‑M2/68‑38 (MQ=255) atTCCACAAATGCGAATTTGTCGGAGAAATGggagatgctgccaacttactgatttagtgcatgatgg < 1:4137630‑M2/68‑38 (MQ=255) ttCCACAAATGCGAATTTGCCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggt > 1:1891525‑M2/1‑30 (MQ=255) caataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGaa > 1:398543‑M2/22‑68 (MQ=255) cacaAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:484400‑M2/1‑27 (MQ=255) cacaAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:1036139‑M2/1‑27 (MQ=255) cacaAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:2393694‑M2/1‑27 (MQ=255) cacaAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:852221‑M2/1‑27 (MQ=255) cacaAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:927341‑M2/1‑27 (MQ=255) cacaAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:2763259‑M2/1‑27 (MQ=255) ataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg < 1:1314291‑M2/49‑1 (MQ=255) ataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg < 1:1244529‑M2/49‑1 (MQ=255) ataagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg < 1:1532357‑M2/49‑1 (MQ=255) taagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGt > 1:1497863‑M2/19‑68 (MQ=255) taagttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGt > 1:4019778‑M2/19‑68 (MQ=255) taacttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGt < 1:3845302‑M2/50‑1 (MQ=255) acaAATGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgttt < 1:3663956‑M2/68‑43 (MQ=255) agttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTa > 1:1960258‑M2/17‑68 (MQ=255) ttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATg > 1:1653715‑M2/15‑68 (MQ=255) ttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATg > 1:2705224‑M2/15‑68 (MQ=255) ttggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATg > 1:1843159‑M2/15‑68 (MQ=255) tGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgntggtgtttttgag < 1:666562‑M2/68‑48 (MQ=255) tGCGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgct < 1:75996‑M2/68‑48 (MQ=255) ggagtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGAc < 1:134486‑M2/56‑1 (MQ=255) cGAATTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt > 1:339709‑M2/1‑19 (MQ=255) agtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCg > 1:2054959‑M2/11‑68 (MQ=255) gtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGt < 1:1569540‑M2/59‑1 (MQ=255) gtcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGt < 1:1937294‑M2/59‑1 (MQ=255) aaTTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgg > 1:629914‑M2/1‑17 (MQ=255) aaTTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc > 1:1084300‑M2/1‑17 (MQ=255) aaTTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc > 1:1581606‑M2/1‑17 (MQ=255) tcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGta > 1:4024633‑M2/9‑68 (MQ=255) tcattaccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGta > 1:2763655‑M2/9‑68 (MQ=255) aTTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:139623‑M2/1‑16 (MQ=255) aTTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:562383‑M2/1‑16 (MQ=255) aTTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:3452561‑M2/1‑16 (MQ=255) aTTTGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:2662849‑M2/1‑16 (MQ=255) tttGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 1:3216756‑M2/1‑15 (MQ=255) ttGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc > 1:3922165‑M2/1‑14 (MQ=255) ttGTCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc > 1:2765891‑M2/1‑14 (MQ=255) taccGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGa < 1:2928859‑M2/64‑1 (MQ=255) tCGGAGAAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt < 1:3704773‑M2/68‑58 (MQ=255) gagaAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACaa > 1:183195/1‑68 (MQ=255) agaAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 1:3126786‑M2/1‑7 (MQ=255) aaaTGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACg < 1:2113489/68‑1 (MQ=255) aaTGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGt > 1:122576/1‑68 (MQ=255) ggCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTaa < 1:2488655/68‑1 (MQ=255) | TGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGAACAAACGTTAA > NC_000913/486062‑486196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |