| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 459,278 | Δ69 bp | coding (391‑459/2355 nt) | lon → | Lon protease |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 459278 | 459346 | 69 | 44 [0] | [0] 44 | lon | Lon protease |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 459277 | 0 (0.000) | 36 (0.780) | 22/116 | 0.3 | 100% | coding (390/2355 nt) | lon | Lon protease |
| ? | NC_000913 | 459347 = | 0 (0.000) | coding (460/2355 nt) | lon | Lon protease | |||||
GTACTGCAATCAGCCAGTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGC > NC_000913/459282‑459410 | acttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACg > 1:3673789‑M2/66‑68 (MQ=255)acttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACg > 1:3435921‑M2/66‑68 (MQ=255)acttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACg > 1:3360543‑M2/66‑68 (MQ=255)acttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACg > 1:2276094‑M2/66‑68 (MQ=255) ttttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTc < 1:4067684‑M2/5‑1 (MQ=255) ttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGc < 1:1218323‑M2/7‑1 (MQ=255) ttctgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGc < 1:1230016‑M2/7‑1 (MQ=255) tgcgaaggcggagtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGa < 1:1680330‑M2/10‑1 (MQ=255) agtatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATcgac > 1:2688586‑M2/48‑68 (MQ=255) tatctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATcgacga > 1:4068950‑M2/46‑68 (MQ=255) atctggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGAt < 1:2518485‑M2/24‑1 (MQ=255) tggagccgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCg > 1:252639‑M2/42‑68 (MQ=255) ggagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCgg < 1:1844322‑M2/28‑1 (MQ=255) gagtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGgc > 1:211748‑M2/40‑68 (MQ=255) agtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGgcg > 1:620462‑M2/39‑68 (MQ=255) agtcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGgcg > 1:1972763‑M2/39‑68 (MQ=255) tcgccgaccattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGcgcg < 1:26864‑M2/32‑1 (MQ=255) accattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGCCTGGc > 1:557269‑M2/31‑68 (MQ=255) cattgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCgg < 1:1793462‑M2/40‑1 (MQ=255) attgatgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGa > 1:4159877‑M2/28‑68 (MQ=255) atgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATAcc < 1:437766‑M2/45‑1 (MQ=255) atgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATAcc < 1:3914568‑M2/45‑1 (MQ=255) atgagcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATAcc < 1:2955054‑M2/45‑1 (MQ=255) atgagccggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATAcc < 1:48220‑M2/45‑1 (MQ=255) tgagcgggaacaggaagtnctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCa > 1:3099135‑M2/23‑68 (MQ=255) agcgggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCAtt < 1:1550255‑M2/48‑1 (MQ=255) gggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATtgct < 1:1127279‑M2/51‑1 (MQ=255) gggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATtgct < 1:168797‑M2/51‑1 (MQ=255) gggaacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATtgct < 1:3105233‑M2/51‑1 (MQ=255) aacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGca < 1:2139131‑M2/54‑1 (MQ=255) aacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGca < 1:1661247‑M2/54‑1 (MQ=255) aacaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGca < 1:2361465‑M2/54‑1 (MQ=255) acaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCattgctgctg > 1:2398770‑M2/14‑66 (MQ=255) acaggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGcac > 1:1267079‑M2/14‑68 (MQ=255) acaggaagtgctaACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGcac > 1:2568759‑M2/14‑68 (MQ=255) aggaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACat < 1:2383860‑M2/57‑1 (MQ=255) gaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACatat > 1:3226052‑M2/10‑68 (MQ=255) gaagtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACatat > 1:346085‑M2/10‑68 (MQ=255) agtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGc > 1:2194058‑M2/8‑68 (MQ=255) agtgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGc > 1:1007793‑M2/8‑68 (MQ=255) tgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCCCATATGCCg > 1:1805303‑M2/6‑68 (MQ=255) tgctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCg > 1:1543824‑M2/6‑68 (MQ=255) gctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGc > 1:2741183‑M2/5‑68 (MQ=255) gctgACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGc < 1:1068393‑M2/64‑1 (MQ=255) | GTACTGCAATCAGCCAGTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGC > NC_000913/459282‑459410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |