mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,706 | T→C | 90.5% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 66,726 | T→C | 90.6% | intergenic (‑194/‑148) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 161,088 | T→G | 17.9% | intergenic (+67/‑129) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 161,106 | T→G | 9.6% | intergenic (+85/‑111) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 356,924 | C→T | 100% | intergenic (+67/+36) | cynX → / ← lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| RA | 417,885 | T→G | 10.6% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| RA | 692,035 | A→T | 5.6% | noncoding (38/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,040 | G→A | 6.3% | noncoding (33/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,043 | T→A | 7.9% | noncoding (30/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,257 | A→T | 5.9% | noncoding (30/75 nt) | glnW ← | tRNA‑Gln |
| RA | 802,799 | C→G | 14.9% | intergenic (‑62/+90) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 931,037 | G→T | 5.7% | A786A (GCG→GCT) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 999,598 | A→C | 7.1% | T66P (ACG→CCG) | ycbF → | putative periplasmic pilin chaperone |
| RA | 1,282,421 | A→C | 7.0% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,812 | C→A | 5.7% | intergenic (‑28/+182) | tyrV ← / ← tyrT | tRNA‑Tyr/tRNA‑Tyr |
| RA | 1,460,356 | T→C | 9.6% | pseudogene (708/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,359 | A→G | 8.4% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 7.6% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,653 | G→T | 8.9% | pseudogene (1005/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,166 | T→C | 5.2% | pseudogene (1518/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,169 | C→T | 5.5% | pseudogene (1521/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,546,448 | C→A | 7.7% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,702,966 | T→A | 7.5% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,036 | G→C | 5.0% | A621P (GCC→CCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,044 | C→A | 9.1% | V623V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,062 | T→A | 17.2% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,158 | A→C | 16.0% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,187 | C→A | 5.6% | P671Q (CCG→CAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,295 | T→A | 10.6% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,222,671 | G→C | 10.4% | intergenic (+127/+246) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,351,426 | G→T | 5.4% | Q44H (CAG→CAT) | ypaA → | uncharacterized protein |
| RA | 2,511,629 | A→T | 5.4% | intergenic (‑34/+6) | alaX ← / ← alaW | tRNA‑Ala/tRNA‑Ala |
| RA | 2,514,509 | G→T | 6.9% | intergenic (+24/‑23) | valU → / → valY | tRNA‑Val/tRNA‑Val |
| RA | 2,554,344 | C→A | 5.4% | intergenic (+87/‑383) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,711,673 | A→C | 7.5% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
| RA | 3,263,315 | T→A | 8.5% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,328 | A→C | 8.6% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,330 | G→T | 6.7% | intergenic (+369/+245) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,441 | A→C | 7.7% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,460 | C→T | 9.1% | intergenic (+499/+115) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,466 | G→T | 17.5% | intergenic (+505/+109) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,554 | A→C | 7.5% | intergenic (+593/+21) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,300,453 | T→G | 12.3% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,462,400 | A→G | 6.9% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,462,437 | G→T | 7.1% | A259E (GCA→GAA) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,438 | C→A | 8.9% | A259S (GCA→TCA) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,439 | C→A | 7.4% | A258A (GCG→GCT) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,441 | C→A | 5.4% | A258S (GCG→TCG) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,676 | A→T | 7.9% | A179A (GCT→GCA) | chiA ← | periplasmic endochitinase |
| RA | 3,991,416 | T→G | 8.3% | L25R (CTT→CGT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,076,055 | T→G | 6.0% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,106,438 | A→G | 100% | I238T (ATT→ACT) | glpK ← | glycerol kinase |
| RA | 4,172,748 | C→T | 91.8% | H526Y (CAC→TAC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,382,371 | G→T | 9.2% | intergenic (+7/‑29) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,596,014 | G→T | 8.8% | intergenic (‑32/+3) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 246565 | 247225 | 661 | 243 [232] | [232] 247 | lafU | pseudogene, lateral flagellar motor protein fragment |
| * | * | ÷ | CP009273 | 2597319 | 2598078 | 760 | 358 [223] | [214] 254 | hyfC | hydrogenase 4, membrane subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 561 (0.800) | 37 (0.060) | 17/92 | NT | 6.2% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 668 (1.160) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
| * | ? | CP009273 | = 15445 | 9 (0.010) | 6 (0.010) | 6/94 | NT | 44.3% | noncoding (59/1345 nt) | IS186 | repeat region |
| ? | CP009273 | = 15513 | NA (NA) | noncoding (127/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 20151 | NA (NA) | 4 (0.010) | 3/88 | NT | NA | noncoding (413/768 nt) | IS1 | repeat region |
| ? | CP009273 | = 275217 | NA (NA) | noncoding (425/768 nt) | IS1 | repeat region | |||||
| * | ? | CP009273 | = 64557 | 549 (0.780) | 47 (0.080) | 13/94 | NT | 8.2% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | = 64577 | 591 (1.010) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | CP009273 | 66560 = | 537 (0.770) | 3882 (9.140) +22 bp |
57/68 | NT | 90.8% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 760 (1.090) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 108768 = | 525 (0.750) | 36 (0.060) | 9/100 | NT | 7.0% | coding (319/744 nt) | zapD | FtsZ stabilizer |
| ? | CP009273 | 108799 = | 484 (0.770) | coding (288/744 nt) | zapD | FtsZ stabilizer | |||||
| * | ? | CP009273 | 138464 = | NA (NA) | 6 (0.010) | 6/94 | NT | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase |
| ? | CP009273 | 138487 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase | |||||
| * | ? | CP009273 | = 221068 | NA (NA) | 6 (0.010) | 4/98 | NT | NA | noncoding (811/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 221102 | NA (NA) | noncoding (845/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 221943 = | NA (NA) | 77 (0.130) | 13/94 | NT | NA | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | CP009273 | 221964 = | NA (NA) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009273 | = 232154 | 465 (0.660) | 25 (0.040) | 10/92 | NT | 5.9% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | CP009273 | = 232160 | 416 (0.720) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
| * | ? | CP009273 | 248296 = | 383 (0.550) | 50 (0.080) | 12/96 | NT | 12.3% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 384 (0.640) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | 350355 = | NA (NA) | 29 (0.050) | 9/92 | NT | 5.3% | noncoding (46/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | 350428 = | 519 (0.900) | noncoding (119/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 360070 = | 605 (0.860) | 1733 (3.300) +CTGATCAGTGAATT |
30/84 | NT | 79.0% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 622 (0.890) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360096 | 580 (0.830) | 4616 (6.720) | 34/110 | NT | 87.2% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 784 (1.140) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 360104 = | 533 (0.760) | 924 (1.320) | 75/112 | NT | 63.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 360168 = | NA (NA) | 131 (0.220) | 16/94 | NT | NA | intergenic (‑102/+493) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 360191 = | NA (NA) | intergenic (‑125/+470) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 377137 = | NA (NA) | 4 (0.010) | 4/94 | NT | NA | coding (331/366 nt) coding (8/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | CP009273 | 377209 = | NA (NA) | coding (80/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 394482 | NA (NA) | 15 (0.020) | 8/98 | NT | NA | coding (308/309 nt) | yaiY | DUF2755 family inner membrane protein |
| ? | CP009273 | = 394503 | NA (NA) | coding (287/309 nt) | yaiY | DUF2755 family inner membrane protein | |||||
| * | ? | CP009273 | = 410282 | 630 (0.900) | 60 (0.100) | 16/98 | NT | 9.3% | coding (928/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | = 410288 | 624 (1.020) | coding (922/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent | |||||
| * | ? | CP009273 | = 426562 | NA (NA) | 11 (0.020) | 6/90 | NT | NA | intergenic (+154/+23) | yajD/tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| ? | CP009273 | = 426567 | NA (NA) | intergenic (+159/+18) | yajD/tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K | |||||
| * | ? | CP009273 | = 429895 | 455 (0.650) | 27 (0.040) | 10/98 | NT | 5.7% | coding (985/1104 nt) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| ? | CP009273 | = 429913 | 499 (0.820) | coding (1003/1104 nt) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase | |||||
| * | ? | CP009273 | 442673 = | 593 (0.850) | 45 (0.080) | 12/90 | NT | 6.9% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | 442734 = | 738 (1.310) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 442683 | 593 (0.850) | 75 (0.130) | 15/90 | NT | 11.0% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 738 (1.310) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 471426 | 544 (0.780) | 27 (0.050) | 9/88 | NT | 5.2% | intergenic (+19/+12) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| ? | CP009273 | = 471428 | 563 (1.020) | intergenic (+21/+10) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL | |||||
| * | ? | CP009273 | 691855 = | 590 (0.840) | 86 (0.130) +TAATG |
4/102 | NT | 12.3% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | CP009273 | 691998 = | 752 (1.070) | noncoding (75/75 nt) | glnV | tRNA‑Gln | |||||
| * | ? | CP009273 | 699831 = | 569 (0.810) | 44 (0.070) | 10/96 | NT | 9.3% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 366 (0.610) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
| * | ? | CP009273 | = 725443 | NA (NA) | 4 (0.010) | 4/102 | NT | NA | coding (405/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725468 | NA (NA) | coding (430/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 725679 | NA (NA) | 8 (0.010) | 4/100 | NT | NA | coding (641/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725702 | NA (NA) | coding (664/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 726727 = | NA (NA) | 3 (0.010) | 3/92 | NT | 100% | coding (1689/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 3614358 = | 0 (0.000) | coding (1807/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 727952 = | 81 (0.120) | 190 (0.280) | 8/110 | NT | 25.6% | coding (2914/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 3760581 = | 1022 (1.490) | pseudogene (1/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | CP009273 | 728285 = | NA (NA) | 13 (0.020) | 11/108 | NT | NA | coding (3247/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 728314 = | NA (NA) | coding (3276/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 772557 = | 193 (0.280) | 7 (0.010) | 5/98 | NT | 5.3% | coding (760/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| ? | CP009273 | 772577 = | 83 (0.140) | coding (780/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex | |||||
| * | ? | CP009273 | 859744 = | NA (NA) | 24 (0.040) | 7/92 | NT | NA | coding (647/663 nt) | fsaA | fructose‑6‑phosphate aldolase 1 |
| ? | CP009273 | 859774 = | NA (NA) | intergenic (+14/+62) | fsaA/moeB | fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase | |||||
| * | ? | CP009273 | = 902734 | 361 (0.520) | 24 (0.040) | 9/98 | NT | 7.2% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 304 (0.500) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | CP009273 | 964816 = | 276 (0.390) | 18 (0.030) | 8/94 | NT | 6.8% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 261 (0.440) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
| * | ? | CP009273 | 1070341 = | NA (NA) | 14 (0.020) | 10/94 | NT | NA | noncoding (1/28 nt) | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1070369 = | NA (NA) | intergenic (+33/+7) | rutR/putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 11 (0.020) +GC |
6/108 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092559 | NA (NA) | intergenic (+274/+462) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 43 (0.070) | 11/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1092806 = | NA (NA) | 10 (0.020) | 7/106 | NT | NA | intergenic (+521/+215) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093009 = | NA (NA) | intergenic (+724/+12) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1092949 = | NA (NA) | 36 (0.060) | 10/100 | NT | 23.7% | intergenic (+664/+72) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093045 = | 130 (0.190) | noncoding (64/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | CP009273 | 1101408 = | 301 (0.430) | 67 (0.110) | 14/94 | NT | 21.4% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | 1101450 = | 239 (0.410) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | CP009273 | = 1161581 | 326 (0.470) | 31 (0.060) | 14/82 | NT | 12.7% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 188 (0.370) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1161581 | 326 (0.470) | 23 (0.030) +G |
12/110 | NT | 7.6% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 244 (0.350) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1182545 | NA (NA) | 10 (0.020) | 4/90 | NT | NA | noncoding (7/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1182548 | NA (NA) | noncoding (10/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 1203246 = | 486 (0.690) | 173 (0.350) | 38/80 | NT | 38.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 209 (0.420) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 546 (0.780) | 196 (0.390) | 32/80 | NT | 39.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 209 (0.420) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1209039 = | 695 (0.990) | 50 (0.090) | 17/92 | NT | 8.7% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 484 (0.840) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
| * | ? | CP009273 | 1238033 = | 901 (1.290) | 38 (0.080) | 16/76 | NT | 7.1% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 386 (0.810) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | CP009273 | = 1280805 | 608 (0.870) | 34 (0.060) | 5/96 | NT | 6.2% | coding (211/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| ? | CP009273 | = 1280852 | 512 (0.850) | coding (258/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 | |||||
| * | ? | CP009273 | 1314763 = | 474 (0.680) | 41 (0.070) | 12/94 | NT | 10.0% | coding (879/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | CP009273 | 1314808 = | 339 (0.580) | coding (834/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | CP009273 | = 1405235 | NA (NA) | 9 (0.010) | 4/98 | NT | NA | intergenic (+94/+35) | dbpA/ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA 2‑thiocytidine biosynthesis protein |
| ? | CP009273 | = 1405259 | NA (NA) | intergenic (+118/+11) | dbpA/ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA 2‑thiocytidine biosynthesis protein | |||||
| * | ? | CP009273 | = 1426905 | NA (NA) | 41 (0.070) | 12/96 | NT | 98.0% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 1 (0.000) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
| * | ? | CP009273 | 1505831 = | 518 (0.740) | 27 (0.050) | 7/94 | NT | 5.8% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 446 (0.760) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
| * | ? | CP009273 | = 1546399 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (72/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1546424 | NA (NA) | noncoding (97/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 1586885 = | NA (NA) | 8 (0.010) | 6/90 | NT | NA | intergenic (‑186/+37) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
| ? | CP009273 | 1586916 = | NA (NA) | intergenic (‑217/+6) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog | |||||
| * | ? | CP009273 | 1641311 = | 675 (0.960) | 45 (0.080) | 12/90 | NT | 8.1% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 479 (0.850) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1685627 = | 349 (0.500) | 22 (0.040) | 11/88 | NT | 7.4% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | CP009273 | 1685659 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
| * | ? | CP009273 | = 1821389 | 457 (0.650) | 23 (0.040) | 10/94 | NT | 6.0% | coding (1128/1344 nt) | astB | succinylarginine dihydrolase |
| ? | CP009273 | = 1821423 | 335 (0.570) | coding (1094/1344 nt) | astB | succinylarginine dihydrolase | |||||
| * | ? | CP009273 | = 1823129 | 342 (0.490) | 26 (0.040) | 11/94 | NT | 7.8% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 331 (0.560) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | 1834892 = | 724 (1.030) | 35 (0.060) | 9/100 | NT | 6.1% | coding (1169/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase |
| ? | CP009273 | 1834923 = | 435 (0.700) | coding (1200/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase | |||||
| * | ? | CP009273 | = 1871532 | 536 (0.770) | 26 (0.040) | 10/96 | NT | 5.6% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | CP009273 | = 1871547 | 423 (0.710) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | CP009273 | = 1909026 | 472 (0.670) | 24 (0.040) | 10/92 | NT | 5.1% | coding (48/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 |
| ? | CP009273 | = 1909032 | 497 (0.860) | coding (42/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 | |||||
| * | ? | CP009273 | = 1948765 | NA (NA) | 15 (0.020) | 7/98 | NT | NA | noncoding (80/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1948776 | NA (NA) | noncoding (91/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 1948783 | NA (NA) | 12 (0.020) | 4/98 | NT | NA | noncoding (98/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 1948783 | NA (NA) | 3 (0.000) | 3/98 | NT | NA | noncoding (98/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3734349 = | NA (NA) | noncoding (26/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 1980922 | 444 (0.630) | 28 (0.050) | 10/92 | NT | 7.0% | intergenic (+13/+66) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/uncharacterized protein |
| ? | CP009273 | = 1980931 | 385 (0.670) | intergenic (+22/+57) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/uncharacterized protein | |||||
| * | ? | CP009273 | = 1995529 | NA (NA) | 3 (0.000) | 3/98 | NT | NA | noncoding (81/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1995540 | NA (NA) | noncoding (92/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 2006338 = | 664 (0.950) | 32 (0.060) | 10/92 | NT | 6.4% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 394 (0.690) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
| * | ? | CP009273 | = 2145164 | NA (NA) | 17 (0.030) | 8/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2161385 | 814 (1.160) | 35 (0.060) | 13/90 | NT | 5.1% | intergenic (‑90/+85) | yegZ/yegR | pseudogene, gpD phage P2‑like protein D/uncharacterized protein |
| ? | CP009273 | = 2161396 | 653 (1.160) | intergenic (‑101/+74) | yegZ/yegR | pseudogene, gpD phage P2‑like protein D/uncharacterized protein | |||||
| * | ? | CP009273 | = 2229998 | 556 (0.790) | 35 (0.060) | 14/92 | NT | 5.5% | intergenic (+19/+224) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| ? | CP009273 | = 2230012 | 757 (1.320) | intergenic (+33/+210) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit | |||||
| * | ? | CP009273 | 2230043 = | NA (NA) | 7 (0.010) | 6/98 | NT | NA | noncoding (31/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 3505959 | NA (NA) | noncoding (90/90 nt) | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 2269311 = | 599 (0.860) | 44 (0.070) | 20/96 | NT | 8.8% | coding (560/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 2269347 = | 402 (0.670) | coding (596/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family | |||||
| * | ? | CP009273 | 2279605 = | 644 (0.920) | 28 (0.050) | 11/86 | NT | 6.1% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 365 (0.680) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
| * | ? | CP009273 | = 2402276 | NA (NA) | 22 (0.040) | 6/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2436000 = | 454 (0.650) | 37 (0.060) | 9/94 | NT | 8.7% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | 2436103 = | 400 (0.680) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2499292 | 644 (0.920) | 44 (0.070) | 11/98 | NT | 6.8% | coding (820/1086 nt) | ypdF | Xaa‑Pro aminopeptidase |
| ? | CP009273 | = 2499321 | 636 (1.040) | coding (791/1086 nt) | ypdF | Xaa‑Pro aminopeptidase | |||||
| * | ? | CP009273 | = 2540715 | 357 (0.510) | 30 (0.050) | 7/94 | NT | 7.1% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 484 (0.820) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
| * | ? | CP009273 | 2590222 = | 596 (0.850) | 26 (0.050) | 9/90 | NT | 5.4% | intergenic (‑126/+42) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| ? | CP009273 | 2590249 = | 428 (0.760) | intergenic (‑153/+15) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase | |||||
| * | ? | CP009273 | = 2680401 | NA (NA) | 24 (0.040) | 7/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2691481 | 710 (1.010) | 51 (0.080) | 16/100 | NT | 7.4% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 642 (1.030) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
| * | ? | CP009273 | 2694210 = | 449 (0.640) | 21 (0.040) | 8/90 | NT | 6.5% | coding (148/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | CP009273 | 2694239 = | 241 (0.430) | coding (119/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | CP009273 | 2747582 = | 630 (0.900) | 43 (0.070) | 9/94 | NT | 8.4% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 411 (0.700) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
| * | ? | CP009273 | = 2749471 | 517 (0.740) | 39 (0.070) | 9/90 | NT | 9.0% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 369 (0.660) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | CP009273 | 2786463 = | 602 (0.860) | 32 (0.050) | 6/102 | NT | 5.7% | coding (370/1281 nt) | gabT | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| ? | CP009273 | 2786484 = | 503 (0.790) | coding (391/1281 nt) | gabT | 4‑aminobutyrate aminotransferase, PLP‑dependent | |||||
| * | ? | CP009273 | = 2787501 | NA (NA) | 12 (0.020) | 6/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2787742 = | 745 (1.060) | 62 (0.100) | 12/96 | NT | 9.8% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 503 (0.840) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2845465 = | 421 (0.600) | 45 (0.080) | 13/96 | NT | 8.6% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 600 (1.000) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
| * | ? | CP009273 | = 2911375 | NA (NA) | 8 (0.010) | 6/92 | NT | NA | intergenic (+203/+29) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1 |
| ? | CP009273 | = 2911381 | NA (NA) | intergenic (+209/+23) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1 | |||||
| * | ? | CP009273 | 2930783 = | NA (NA) | 23 (0.040) | 12/90 | NT | NA | intergenic (+65/‑14) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase |
| ? | CP009273 | 2930811 = | NA (NA) | coding (15/1449 nt) | fucK | L‑fuculokinase | |||||
| * | ? | CP009273 | = 2974100 | NA (NA) | 27 (0.050) | 11/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 3015939 | 870 (1.240) | 44 (0.070) | 15/96 | NT | 5.8% | coding (1265/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| ? | CP009273 | = 3015996 | 673 (1.120) | coding (1322/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding | |||||
| * | ? | CP009273 | 3031308 = | 816 (1.170) | 34 (0.060) | 11/98 | NT | 5.3% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 496 (0.810) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | CP009273 | = 3202572 | 454 (0.650) | 29 (0.050) | 10/92 | NT | 8.2% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 274 (0.480) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
| * | ? | CP009273 | 3215213 = | 438 (0.630) | 40 (0.070) | 12/96 | NT | 8.8% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 458 (0.760) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | CP009273 | 3256491 = | 862 (1.230) | 39 (0.070) | 13/90 | NT | 5.7% | coding (529/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
| ? | CP009273 | 3256545 = | 589 (1.050) | coding (475/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | CP009273 | 3320552 = | 748 (1.070) | 40 (0.070) | 9/94 | NT | 5.6% | coding (472/630 nt) | rlmE | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | CP009273 | 3320589 = | 725 (1.230) | coding (435/630 nt) | rlmE | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | = 3348965 | 634 (0.910) | 41 (0.070) | 18/96 | NT | 6.3% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 678 (1.130) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | CP009273 | 3375198 = | 608 (0.870) | 49 (0.080) | 10/94 | NT | 9.3% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 447 (0.760) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | CP009273 | = 3385586 | 367 (0.520) | 18 (0.030) | 10/98 | NT | 5.3% | noncoding (152/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385603 | NA (NA) | noncoding (169/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
| * | ? | CP009273 | 3416786 = | NA (NA) | 5 (0.010) | 4/102 | NT | NA | noncoding (116/120 nt) | rrfF | 5S ribosomal RNA of rrnD operon |
| ? | CP009273 | 3417144 = | NA (NA) | noncoding (3/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | = 3462138 | 786 (1.120) | 43 (0.090) | 15/78 | NT | 5.7% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 873 (1.790) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
| * | ? | CP009273 | = 3487124 | NA (NA) | 30 (0.050) | 10/96 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487134 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3509341 = | 1016 (1.450) | 58 (0.100) | 9/94 | NT | 7.5% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | CP009273 | 3509369 = | 573 (0.980) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | = 3538010 | 572 (0.820) | 26 (0.040) | 12/94 | NT | 5.1% | coding (194/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase |
| ? | CP009273 | = 3538051 | 496 (0.840) | coding (153/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase | |||||
| * | ? | CP009273 | = 3613129 | NA (NA) | 11 (0.020) | 9/106 | NT | NA | coding (578/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613200 | NA (NA) | coding (649/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3613137 | NA (NA) | 7 (0.010) | 6/98 | NT | NA | coding (586/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613192 | NA (NA) | coding (641/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3613160 | NA (NA) | 3 (0.010) | 3/96 | NT | NA | coding (609/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613240 | NA (NA) | coding (689/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3613276 = | NA (NA) | 35 (0.050) | 11/106 | NT | NA | coding (725/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613329 = | NA (NA) | coding (778/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3614228 | NA (NA) | 16 (0.030) | 10/90 | NT | 100% | coding (1677/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3614368 | 0 (0.000) | coding (1817/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3614731 = | NA (NA) | 16 (0.030) | 8/98 | NT | 100% | coding (2180/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614737 = | 0 (0.000) | coding (2186/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3615349 = | NA (NA) | 10 (0.020) | 8/96 | NT | 100% | coding (2798/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3615372 = | 0 (0.000) | coding (2821/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3618995 | NA (NA) | 10 (0.020) | 7/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3630213 | 524 (0.750) | 59 (0.110) | 22/84 | NT | 13.3% | coding (558/1203 nt) | yhiN | putative oxidoreductase |
| ? | CP009273 | = 3630199 | 374 (0.710) | coding (572/1203 nt) | yhiN | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3701786 | 168 (0.240) | 10 (0.020) | 7/88 | NT | 7.0% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | 3701790 = | 183 (0.260) | 16 (0.030) | 4/88 | NT | 12.0% | intergenic (‑725/+186) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701955 = | 91 (0.170) | intergenic (‑890/+21) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3820789 | NA (NA) | 5 (0.010) | 4/98 | NT | NA | intergenic (+138/+31) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter |
| ? | CP009273 | = 3820811 | NA (NA) | intergenic (+160/+9) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter | |||||
| * | ? | CP009273 | 3832491 = | 559 (0.800) | 26 (0.040) | 7/96 | NT | 6.9% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 224 (0.370) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
| * | ? | CP009273 | 3847022 = | NA (NA) | 11 (0.020) | 6/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
| * | ? | CP009273 | 3851553 = | 666 (0.950) | 44 (0.080) | 13/86 | NT | 9.2% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 359 (0.670) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | CP009273 | 3920778 = | 689 (0.980) | 81 (0.150) | 19/88 | NT | 14.1% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 443 (0.810) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | = 3921522 | 625 (0.890) | 38 (0.060) | 9/100 | NT | 6.2% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 599 (0.960) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
| * | ? | CP009273 | = 3935250 | NA (NA) | 146 (0.240) +AAGCTGT |
6/98 | NT | NA | noncoding (83/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4028968 | NA (NA) | noncoding (78/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 3999175 = | 629 (0.900) | 40 (0.070) | 13/96 | NT | 7.1% | intergenic (+84/‑49) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase |
| ? | CP009273 | 3999197 = | 509 (0.850) | intergenic (+106/‑27) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 3999963 | 816 (1.170) | 32 (0.050) | 8/98 | NT | 5.2% | coding (740/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | CP009273 | = 4000007 | 447 (0.730) | coding (784/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | 4034088 = | NA (NA) | 15 (0.030) | 7/94 | NT | 100% | intergenic (+92/+178) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | 4034093 = | 0 (0.000) | intergenic (+97/+173) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | CP009273 | = 4034176 | NA (NA) | 48 (0.080) | 12/92 | NT | 9.0% | intergenic (+180/+90) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | = 4034200 | 594 (0.850) | intergenic (+204/+66) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | CP009273 | = 4047497 | 475 (0.680) | 54 (0.090) | 15/94 | NT | 11.2% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 457 (0.780) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | CP009273 | 4061067 = | 675 (0.960) | 48 (0.080) | 14/94 | NT | 9.4% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 362 (0.620) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | 4156417 = | NA (NA) | 15 (0.020) | 4/112 | NT | NA | intergenic (+204/‑170) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | CP009273 | 4197929 = | NA (NA) | intergenic (‑469/‑146) | purH/rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | 4161825 = | NA (NA) | 33 (0.060) | 8/96 | NT | 100% | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | 4161830 = | 0 (0.000) | intergenic (+146/‑155) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | CP009273 | 4190073 = | 732 (1.050) | 76 (0.140) | 17/90 | NT | 11.9% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 539 (0.960) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | CP009273 | 4306574 = | 303 (0.430) | 17 (0.030) | 13/98 | NT | 6.6% | coding (462/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | CP009273 | 4306632 = | 215 (0.350) | coding (404/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | CP009273 | = 4308345 | 783 (1.120) | 47 (0.080) | 13/94 | NT | 7.4% | coding (237/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| ? | CP009273 | = 4308403 | 523 (0.890) | coding (179/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein | |||||
| * | ? | CP009273 | 4311466 = | 963 (1.380) | 61 (0.100) | 21/94 | NT | 7.8% | coding (48/453 nt) | phnG | ribophosphonate triphosphate synthase subunit |
| ? | CP009273 | 4311493 = | 637 (1.080) | coding (21/453 nt) | phnG | ribophosphonate triphosphate synthase subunit | |||||
| * | ? | CP009273 | 4316074 = | NA (NA) | 21 (0.030) +G |
17/110 | NT | 5.4% | noncoding (456/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 4316093 = | 378 (0.540) | noncoding (475/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | 4328027 = | 341 (0.490) | 34 (0.060) | 12/96 | NT | 8.7% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 419 (0.700) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
| * | ? | CP009273 | = 4382210 | 239 (0.340) | 18 (0.030) | 13/96 | NT | 7.2% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 257 (0.430) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
| * | ? | CP009273 | 4501871 = | 419 (0.600) | 34 (0.060) | 13/92 | NT | 5.6% | coding (361/957 nt) | fecD | iron‑dicitrate transporter subunit |
| ? | CP009273 | 4501966 = | 806 (1.400) | coding (266/957 nt) | fecD | iron‑dicitrate transporter subunit | |||||
| * | ? | CP009273 | 4506708 = | 601 (0.860) | 44 (0.070) | 14/94 | NT | 8.7% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 423 (0.720) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | CP009273 | 4512275 = | 619 (0.880) | 44 (0.080) | 16/92 | NT | 7.5% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 578 (1.010) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||