mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,706 | T→C | 86.2% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 66,726 | T→C | 85.4% | intergenic (‑194/‑148) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 298,191 | T→G | 10.1% | S32R (AGC→CGC) | paoA ← | PaoABC aldehyde oxidoreductase, 2Fe‑2S subunit |
| RA | 417,885 | T→G | 13.7% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| RA | 691,931 | T→A | 10.5% | noncoding (30/75 nt) | glnX ← | tRNA‑Gln |
| RA | 692,313 | G→T | 5.3% | intergenic (‑27/+8) | glnW ← / ← glnU | tRNA‑Gln/tRNA‑Gln |
| RA | 692,358 | T→A | 5.9% | noncoding (38/75 nt) | glnU ← | tRNA‑Gln |
| RA | 802,799 | C→G | 9.9% | intergenic (‑62/+90) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 930,950 | A→C | 7.8% | Q757H (CAA→CAC) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 930,957 | C→G | 6.5% | P760A (CCG→GCG) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 931,037 | G→T | 6.5% | A786A (GCG→GCT) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 999,590 | A→C | 5.1% | N63T (AAC→ACC) | ycbF → | putative periplasmic pilin chaperone |
| RA | 999,598 | A→C | 7.3% | T66P (ACG→CCG) | ycbF → | putative periplasmic pilin chaperone |
| RA | 1,266,039 | G→A | 5.9% | intergenic (+123/+166) | rdlC → / ← chaA | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC/calcium/sodium:proton antiporter |
| RA | 1,282,421 | A→C | 6.2% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,460,356 | T→C | 11.6% | pseudogene (708/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,359 | A→G | 9.6% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 5.0% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,653 | G→T | 13.5% | pseudogene (1005/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,839 | T→G | 5.3% | pseudogene (1191/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,702,966 | T→A | 8.6% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,036 | G→C | 6.5% | A621P (GCC→CCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,044 | C→A | 6.7% | V623V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,062 | T→A | 14.3% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,140 | C→A | 8.9% | V655V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,158 | A→C | 15.6% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,173 | A→G | 5.9% | K666K (AAA→AAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,251 | A→C | 5.3% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,295 | T→A | 13.1% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,303 | G→C | 5.3% | E710Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,311 | T→A | 7.1% | V712V (GTT→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,511,629 | A→T | 5.4% | intergenic (‑34/+6) | alaX ← / ← alaW | tRNA‑Ala/tRNA‑Ala |
| RA | 3,263,315 | T→A | 11.8% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,441 | A→C | 7.0% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,541 | C→A | 7.6% | intergenic (+580/+34) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,462,400 | A→G | 5.1% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,462,438 | C→A | 10.3% | A259S (GCA→TCA) | chiA ← | periplasmic endochitinase |
| RA | 3,462,439 | C→A | 8.7% | A258A (GCG→GCT) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,441 | C→A | 7.9% | A258S (GCG→TCG) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,774,505 | C→G | 5.7% | intergenic (+128/‑70) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,991,405 | A→C | 9.7% | P21P (CCA→CCC) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,991,409 | A→C | 6.8% | S23R (AGC→CGC) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,991,416 | T→G | 10.9% | L25R (CTT→CGT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,076,055 | T→G | 5.6% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,106,586 | G→T | 100% | R189S (CGT→AGT) | glpK ← | glycerol kinase |
| JC | 4,173,033 | 63 bp x 2 | 46.4% | duplication | rpoB → | RNA polymerase, beta subunit |
| RA | 4,382,371 | G→T | 7.2% | intergenic (+7/‑29) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,595,993 | T→A | 8.9% | intergenic (‑11/+24) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| RA | 4,596,009 | G→C | 15.8% | intergenic (‑27/+8) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 246565 | 247227 | 663 | 169 [152] | [153] 267 | lafU | pseudogene, lateral flagellar motor protein fragment |
| * | * | ÷ | CP009273 | 2597320 | 2598078 | 759 | 159 [153] | [152] 184 | hyfC | hydrogenase 4, membrane subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 20151 | NA (NA) | 7 (0.020) | 3/88 | NT | NA | noncoding (413/768 nt) | IS1 | repeat region |
| ? | CP009273 | = 275217 | NA (NA) | noncoding (425/768 nt) | IS1 | repeat region | |||||
| * | ? | CP009273 | = 25731 | 102 (0.290) | 9 (0.030) | 5/84 | NT | 8.1% | noncoding (22/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 25775 | NA (NA) | noncoding (66/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | = 64557 | 398 (0.840) | 35 (0.090) | 12/94 | NT | 8.6% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | = 64577 | 412 (1.040) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | CP009273 | 66560 = | 321 (0.680) | 1578 (5.510) +22 bp |
48/68 | NT | 86.6% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 486 (1.030) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 108768 = | 322 (0.680) | 27 (0.060) | 7/100 | NT | 8.1% | coding (319/744 nt) | zapD | FtsZ stabilizer |
| ? | CP009273 | 108799 = | 329 (0.780) | coding (288/744 nt) | zapD | FtsZ stabilizer | |||||
| * | ? | CP009273 | 138464 = | NA (NA) | 5 (0.010) | 4/94 | NT | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase |
| ? | CP009273 | 138487 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase | |||||
| * | ? | CP009273 | 142767 = | 442 (0.940) | 19 (0.050) | 10/94 | NT | 5.5% | coding (1200/1230 nt) | yadE | putative polysaccharide deacetylase lipoprotein |
| ? | CP009273 | 142790 = | 284 (0.720) | coding (1223/1230 nt) | yadE | putative polysaccharide deacetylase lipoprotein | |||||
| * | ? | CP009273 | 221943 = | NA (NA) | 57 (0.140) | 17/94 | NT | NA | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | CP009273 | 221964 = | NA (NA) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009273 | = 223526 | 63 (0.130) | 6 (0.010) | 4/100 | NT | 17.6% | noncoding (1281/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 223533 | 0 (0.000) | noncoding (1288/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 224503 = | NA (NA) | 8 (0.020) | 5/98 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 224528 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 248296 = | 200 (0.420) | 28 (0.070) | 13/96 | NT | 12.2% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 231 (0.570) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | = 248303 | 160 (0.340) | 25 (0.060) | 8/96 | NT | 12.0% | coding (919/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | = 248351 | 231 (0.570) | coding (967/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | = 270091 | NA (NA) | 4 (0.010) | 3/102 | NT | NA | noncoding (770/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 270204 | NA (NA) | noncoding (657/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 270339 | NA (NA) | 6 (0.020) | 5/94 | NT | NA | noncoding (134/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270364 | NA (NA) | noncoding (159/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 353255 | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (61/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 353266 | NA (NA) | noncoding (72/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 360070 = | 452 (0.960) | 760 (2.150) +CTGATCAGTGAATT |
28/84 | NT | 69.8% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 425 (0.900) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360096 | 408 (0.860) | 1921 (4.150) | 35/110 | NT | 80.9% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 509 (1.100) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 360104 = | 384 (0.810) | 675 (1.430) | 76/112 | NT | 63.7% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 360168 = | NA (NA) | 84 (0.210) | 13/94 | NT | NA | intergenic (‑102/+493) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 360191 = | NA (NA) | intergenic (‑125/+470) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 391213 = | 344 (0.730) | 22 (0.060) | 7/94 | NT | 5.4% | coding (531/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| ? | CP009273 | 391301 = | 479 (1.210) | coding (443/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase | |||||
| * | ? | CP009273 | = 394482 | NA (NA) | 6 (0.010) | 5/98 | NT | NA | coding (308/309 nt) | yaiY | DUF2755 family inner membrane protein |
| ? | CP009273 | = 394503 | NA (NA) | coding (287/309 nt) | yaiY | DUF2755 family inner membrane protein | |||||
| * | ? | CP009273 | = 410282 | 364 (0.770) | 50 (0.120) | 13/98 | NT | 12.9% | coding (928/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | = 410288 | 356 (0.860) | coding (922/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent | |||||
| * | ? | CP009273 | = 429895 | 333 (0.710) | 19 (0.050) | 4/98 | NT | 5.3% | coding (985/1104 nt) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| ? | CP009273 | = 429913 | 381 (0.920) | coding (1003/1104 nt) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase | |||||
| * | ? | CP009273 | 442673 = | 443 (0.940) | 33 (0.090) | 13/90 | NT | 7.4% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | 442734 = | 473 (1.250) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 442683 | 438 (0.930) | 53 (0.140) | 15/90 | NT | 11.4% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 473 (1.250) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | = 471426 | 304 (0.640) | 21 (0.060) | 8/88 | NT | 6.9% | intergenic (+19/+12) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| ? | CP009273 | = 471428 | 326 (0.880) | intergenic (+21/+10) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL | |||||
| * | ? | CP009273 | 519440 = | 420 (0.890) | 22 (0.050) | 9/96 | NT | 5.5% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 398 (0.980) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 577278 | 317 (0.670) | 19 (0.050) | 7/96 | NT | 6.5% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
| * | ? | CP009273 | = 610426 | 222 (0.470) | 26 (0.060) | 6/96 | NT | 10.4% | coding (814/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent |
| ? | CP009273 | = 610453 | 258 (0.640) | coding (841/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent | |||||
| * | ? | CP009273 | = 678193 | 214 (0.450) | 10 (0.030) | 8/94 | NT | 5.5% | coding (657/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
| ? | CP009273 | = 678254 | 164 (0.410) | coding (596/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription | |||||
| * | ? | CP009273 | 699831 = | 388 (0.820) | 23 (0.060) | 7/96 | NT | 7.2% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 264 (0.650) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
| * | ? | CP009273 | = 711204 | 283 (0.600) | 13 (0.030) | 6/104 | NT | 5.0% | coding (337/495 nt) | ybfP | lipoprotein |
| ? | CP009273 | = 711218 | 231 (0.530) | coding (351/495 nt) | ybfP | lipoprotein | |||||
| * | ? | CP009273 | = 725624 | 246 (0.520) | 12 (0.030) | 8/98 | NT | 5.3% | coding (586/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725679 | NA (NA) | coding (641/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 725679 | NA (NA) | 7 (0.020) | 6/100 | NT | NA | coding (641/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725702 | NA (NA) | coding (664/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 725724 | NA (NA) | 36 (0.090) | 17/94 | NT | NA | coding (686/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725738 | NA (NA) | coding (700/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 727866 | 0 (0.000) | 9 (0.020) | 4/96 | NT | 100% | coding (2828/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 729698 | NA (NA) | pseudogene (110/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
| * | ? | CP009273 | 728285 = | NA (NA) | 11 (0.020) | 11/108 | NT | NA | coding (3247/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 728314 = | NA (NA) | coding (3276/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 772557 = | 137 (0.290) | 6 (0.010) | 4/98 | NT | 6.6% | coding (760/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| ? | CP009273 | 772577 = | 50 (0.120) | coding (780/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex | |||||
| * | ? | CP009273 | = 777093 | 133 (0.280) | 74 (0.180) +TTTGAGT |
4/98 | NT | 38.9% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | CP009273 | = 2514886 | NA (NA) | noncoding (614/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | 830751 = | 513 (1.090) | 26 (0.060) | 10/98 | NT | 6.5% | coding (48/963 nt) | ybiB | putative family 3 glycosyltransferase |
| ? | CP009273 | 830783 = | 296 (0.720) | coding (80/963 nt) | ybiB | putative family 3 glycosyltransferase | |||||
| * | ? | CP009273 | 859744 = | NA (NA) | 13 (0.030) | 7/92 | NT | NA | coding (647/663 nt) | fsaA | fructose‑6‑phosphate aldolase 1 |
| ? | CP009273 | 859774 = | NA (NA) | intergenic (+14/+62) | fsaA/moeB | fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase | |||||
| * | ? | CP009273 | = 902734 | 225 (0.480) | 20 (0.050) | 8/98 | NT | 9.1% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 205 (0.500) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | CP009273 | 910536 = | NA (NA) | 9 (0.020) | 6/92 | NT | 5.3% | intergenic (‑223/+272) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910538 = | 195 (0.410) | intergenic (‑225/+270) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
| * | ? | CP009273 | 910549 = | 112 (0.240) | 6 (0.010) | 6/98 | NT | 6.3% | intergenic (‑236/+259) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910582 = | 79 (0.190) | intergenic (‑269/+226) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
| * | ? | CP009273 | 964816 = | 133 (0.280) | 20 (0.050) | 10/94 | NT | 12.1% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 178 (0.450) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
| * | ? | CP009273 | 1023817 = | NA (NA) | 7 (0.020) | 4/84 | NT | NA | intergenic (+2/+43) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein |
| ? | CP009273 | 1023851 = | NA (NA) | intergenic (+36/+9) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein | |||||
| * | ? | CP009273 | 1066816 = | 469 (0.990) | 29 (0.070) | 11/98 | NT | 6.5% | coding (406/801 nt) | rutD | putative aminoacrylate hydrolase, reactive intermediate detoxification |
| ? | CP009273 | 1066859 = | 421 (1.020) | coding (363/801 nt) | rutD | putative aminoacrylate hydrolase, reactive intermediate detoxification | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 9 (0.020) +GC |
5/108 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092559 | NA (NA) | intergenic (+274/+462) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | = 1092557 | NA (NA) | 31 (0.080) | 9/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1101408 = | 224 (0.470) | 32 (0.080) | 8/94 | NT | 14.0% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | 1101450 = | 206 (0.520) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | CP009273 | 1111080 = | NA (NA) | 12 (0.030) | 5/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | CP009273 | = 1161581 | 241 (0.510) | 19 (0.060) | 11/82 | NT | 10.6% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 144 (0.420) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1171846 | 359 (0.760) | 17 (0.040) | 8/96 | NT | 5.6% | coding (964/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein |
| ? | CP009273 | = 1171942 | 264 (0.650) | coding (1060/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein | |||||
| * | ? | CP009273 | 1203246 = | 379 (0.800) | 95 (0.280) | 32/80 | NT | 29.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 187 (0.550) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 416 (0.880) | 103 (0.310) | 30/80 | NT | 29.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 187 (0.550) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1209039 = | 464 (0.980) | 27 (0.070) | 10/92 | NT | 7.1% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 321 (0.830) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
| * | ? | CP009273 | 1238033 = | 606 (1.280) | 25 (0.080) | 14/76 | NT | 7.1% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 241 (0.750) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | CP009273 | = 1280805 | 451 (0.960) | 22 (0.050) | 4/96 | NT | 5.6% | coding (211/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| ? | CP009273 | = 1280852 | 352 (0.870) | coding (258/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 | |||||
| * | ? | CP009273 | 1314763 = | 340 (0.720) | 22 (0.060) | 10/94 | NT | 7.4% | coding (879/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | CP009273 | 1314808 = | 264 (0.670) | coding (834/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | CP009273 | 1505831 = | 370 (0.780) | 22 (0.060) | 8/94 | NT | 6.9% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 279 (0.700) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
| * | ? | CP009273 | 1641311 = | 428 (0.910) | 20 (0.050) | 11/90 | NT | 5.9% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 292 (0.770) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1685627 = | 145 (0.310) | 15 (0.040) | 9/88 | NT | 11.6% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | CP009273 | 1685659 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
| * | ? | CP009273 | = 1821389 | 323 (0.680) | 18 (0.050) | 11/94 | NT | 6.8% | coding (1128/1344 nt) | astB | succinylarginine dihydrolase |
| ? | CP009273 | = 1821423 | 224 (0.570) | coding (1094/1344 nt) | astB | succinylarginine dihydrolase | |||||
| * | ? | CP009273 | = 1823129 | 223 (0.470) | 17 (0.040) | 9/94 | NT | 7.8% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 217 (0.550) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | 1834892 = | 472 (1.000) | 26 (0.060) | 8/100 | NT | 6.9% | coding (1169/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase |
| ? | CP009273 | 1834923 = | 284 (0.670) | coding (1200/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase | |||||
| * | ? | CP009273 | = 1870380 | 374 (0.790) | 23 (0.060) | 9/94 | NT | 6.3% | coding (451/1182 nt) | yeaN | putative transporter |
| ? | CP009273 | = 1870397 | 372 (0.940) | coding (468/1182 nt) | yeaN | putative transporter | |||||
| * | ? | CP009273 | = 1871532 | 362 (0.770) | 25 (0.060) | 9/96 | NT | 7.3% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | CP009273 | = 1871547 | 326 (0.810) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | CP009273 | = 1940291 | 248 (0.530) | 29 (0.070) | 10/96 | NT | 7.8% | intergenic (‑58/+81) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
| ? | CP009273 | = 1940293 | 473 (1.170) | intergenic (‑60/+79) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein | |||||
| * | ? | CP009273 | 1947764 = | 336 (0.710) | 19 (0.040) | 7/102 | NT | 5.5% | coding (66/972 nt) | cmoB | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| ? | CP009273 | 1947802 = | 352 (0.820) | coding (104/972 nt) | cmoB | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent | |||||
| * | ? | CP009273 | = 1948765 | NA (NA) | 4 (0.010) | 3/98 | NT | NA | noncoding (80/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3734331 = | NA (NA) | noncoding (8/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 1958516 = | 387 (0.820) | 24 (0.060) | 7/96 | NT | 7.7% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 247 (0.610) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
| * | ? | CP009273 | = 1980922 | 281 (0.600) | 13 (0.030) | 5/92 | NT | 5.3% | intergenic (+13/+66) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/uncharacterized protein |
| ? | CP009273 | = 1980931 | 236 (0.610) | intergenic (+22/+57) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/uncharacterized protein | |||||
| * | ? | CP009273 | = 2140134 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (54/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 2140164 | NA (NA) | noncoding (84/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | = 2145164 | NA (NA) | 11 (0.030) | 6/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2148074 = | 419 (0.890) | 18 (0.040) | 13/96 | NT | 5.5% | coding (578/1248 nt) | mdtA | multidrug efflux system, subunit A |
| ? | CP009273 | 2148105 = | 260 (0.640) | coding (609/1248 nt) | mdtA | multidrug efflux system, subunit A | |||||
| * | ? | CP009273 | = 2161385 | 567 (1.200) | 29 (0.080) | 10/90 | NT | 5.9% | intergenic (‑90/+85) | yegZ/yegR | pseudogene, gpD phage P2‑like protein D/uncharacterized protein |
| ? | CP009273 | = 2161396 | 475 (1.250) | intergenic (‑101/+74) | yegZ/yegR | pseudogene, gpD phage P2‑like protein D/uncharacterized protein | |||||
| * | ? | CP009273 | = 2191253 | 225 (0.480) | 22 (0.060) | 10/90 | NT | 8.8% | pseudogene (1301/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | CP009273 | = 2191263 | 277 (0.730) | pseudogene (1311/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | CP009273 | = 2229998 | 214 (0.450) | 15 (0.040) | 8/92 | NT | 5.3% | intergenic (+19/+224) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| ? | CP009273 | = 2230012 | 358 (0.920) | intergenic (+33/+210) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit | |||||
| * | ? | CP009273 | 2269311 = | 387 (0.820) | 30 (0.070) | 15/96 | NT | 9.0% | coding (560/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 2269347 = | 277 (0.680) | coding (596/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family | |||||
| * | ? | CP009273 | 2279605 = | 429 (0.910) | 31 (0.090) | 12/86 | NT | 9.4% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 265 (0.730) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
| * | ? | CP009273 | = 2402276 | NA (NA) | 11 (0.030) | 3/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2402956 = | NA (NA) | 6 (0.010) | 5/96 | NT | NA | intergenic (+16/+43) | yfbR/yfbS | 5'‑nucleotidase/putative transporter |
| ? | CP009273 | 2402987 = | NA (NA) | noncoding (13/19 nt) | REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2436000 = | 323 (0.680) | 19 (0.050) | 8/94 | NT | 6.3% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | 2436103 = | 296 (0.750) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2436008 | 365 (0.770) | 22 (0.060) | 8/94 | NT | 6.8% | coding (766/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | = 2436093 | 296 (0.750) | coding (851/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | = 2499292 | 408 (0.860) | 22 (0.050) | 11/98 | NT | 5.0% | coding (820/1086 nt) | ypdF | Xaa‑Pro aminopeptidase |
| ? | CP009273 | = 2499321 | 473 (1.150) | coding (791/1086 nt) | ypdF | Xaa‑Pro aminopeptidase | |||||
| * | ? | CP009273 | 2542953 = | 565 (1.200) | 24 (0.060) | 10/98 | NT | 5.0% | intergenic (+188/+52) | yfeW/yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| ? | CP009273 | 2542983 = | 413 (1.000) | intergenic (+218/+22) | yfeW/yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic | |||||
| * | ? | CP009273 | 2590222 = | 354 (0.750) | 30 (0.080) | 11/90 | NT | 10.0% | intergenic (‑126/+42) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| ? | CP009273 | 2590249 = | 253 (0.670) | intergenic (‑153/+15) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase | |||||
| * | ? | CP009273 | = 2657620 | 308 (0.650) | 18 (0.050) | 8/94 | NT | 6.0% | intergenic (+16/‑129) | suhB/yfhR | inositol monophosphatase/putative S9 family prolyl oligopeptidase |
| ? | CP009273 | = 2657626 | 305 (0.770) | intergenic (+22/‑123) | suhB/yfhR | inositol monophosphatase/putative S9 family prolyl oligopeptidase | |||||
| * | ? | CP009273 | = 2680401 | NA (NA) | 17 (0.040) | 4/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2691481 | 473 (1.000) | 43 (0.100) | 16/100 | NT | 8.7% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 479 (1.140) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
| * | ? | CP009273 | 2694210 = | 310 (0.660) | 12 (0.030) | 8/90 | NT | 5.6% | coding (148/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | CP009273 | 2694239 = | 159 (0.420) | coding (119/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | CP009273 | 2707629 = | NA (NA) | 9 (0.020) +TTC |
3/106 | NT | NA | intergenic (+40/+169) | srmB/yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 3323920 | NA (NA) | intergenic (+165/+21) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair | |||||
| * | ? | CP009273 | 2747582 = | 455 (0.960) | 35 (0.090) | 9/94 | NT | 9.3% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 300 (0.760) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
| * | ? | CP009273 | = 2787501 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2787742 = | 483 (1.020) | 41 (0.100) | 8/96 | NT | 9.9% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 329 (0.810) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2845465 = | 326 (0.690) | 26 (0.060) | 12/96 | NT | 7.5% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 366 (0.910) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
| * | ? | CP009273 | 2930783 = | NA (NA) | 16 (0.040) | 5/90 | NT | NA | intergenic (+65/‑14) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase |
| ? | CP009273 | 2930811 = | NA (NA) | coding (15/1449 nt) | fucK | L‑fuculokinase | |||||
| * | ? | CP009273 | 2943957 = | NA (NA) | 4 (0.010) | 3/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2955919 | 281 (0.600) | 16 (0.040) | 5/96 | NT | 6.0% | coding (205/324 nt) | ppdC | putative prepilin peptidase‑dependent protein |
| ? | CP009273 | = 2955921 | 260 (0.640) | coding (203/324 nt) | ppdC | putative prepilin peptidase‑dependent protein | |||||
| * | ? | CP009273 | = 2974100 | NA (NA) | 8 (0.020) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3031308 = | 415 (0.880) | 24 (0.060) | 14/98 | NT | 7.8% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 202 (0.490) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | CP009273 | 3032389 = | 554 (1.170) | 23 (0.050) | 4/104 | NT | 5.1% | coding (714/897 nt) | xerD | site‑specific tyrosine recombinase |
| ? | CP009273 | 3032408 = | 349 (0.800) | coding (695/897 nt) | xerD | site‑specific tyrosine recombinase | |||||
| * | ? | CP009273 | 3060669 = | 429 (0.910) | 15 (0.040) | 8/92 | NT | 5.0% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | CP009273 | 3060693 = | 212 (0.550) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
| * | ? | CP009273 | = 3063441 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (80/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3063452 | NA (NA) | noncoding (91/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 3113142 = | 363 (0.770) | 14 (0.030) | 7/98 | NT | 5.0% | coding (1497/1683 nt) | glcA | glycolate transporter |
| ? | CP009273 | 3113164 = | 212 (0.510) | coding (1475/1683 nt) | glcA | glycolate transporter | |||||
| * | ? | CP009273 | = 3202572 | 315 (0.670) | 27 (0.070) | 9/92 | NT | 10.7% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 194 (0.500) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
| * | ? | CP009273 | = 3208309 | NA (NA) | 5 (0.010) | 4/92 | NT | NA | intergenic (+62/+17) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| ? | CP009273 | = 3208314 | NA (NA) | intergenic (+67/+12) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
| * | ? | CP009273 | 3215213 = | 297 (0.630) | 29 (0.070) | 10/96 | NT | 10.2% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 257 (0.640) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | CP009273 | 3256491 = | 603 (1.280) | 25 (0.070) | 8/90 | NT | 5.2% | coding (529/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
| ? | CP009273 | 3256545 = | 433 (1.140) | coding (475/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | CP009273 | 3293574 = | 446 (0.950) | 22 (0.060) | 10/90 | NT | 6.5% | coding (250/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein |
| ? | CP009273 | 3293608 = | 272 (0.720) | coding (284/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein | |||||
| * | ? | CP009273 | = 3333655 | 319 (0.680) | 18 (0.050) | 11/94 | NT | 5.5% | coding (22/978 nt) | yrbG | putative calcium/sodium:proton antiporter |
| ? | CP009273 | = 3333682 | 353 (0.890) | coding (49/978 nt) | yrbG | putative calcium/sodium:proton antiporter | |||||
| * | ? | CP009273 | = 3348965 | 458 (0.970) | 24 (0.060) | 12/96 | NT | 6.2% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 337 (0.830) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | CP009273 | 3375198 = | 456 (0.970) | 37 (0.090) | 11/94 | NT | 9.5% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 324 (0.820) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | CP009273 | = 3392134 | 512 (1.090) | 24 (0.060) | 11/96 | NT | 5.1% | coding (101/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD |
| ? | CP009273 | = 3392148 | 453 (1.120) | coding (87/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD | |||||
| * | ? | CP009273 | = 3462138 | 524 (1.110) | 26 (0.080) | 10/78 | NT | 5.4% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 548 (1.670) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
| * | ? | CP009273 | = 3487124 | NA (NA) | 27 (0.070) | 9/96 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487134 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3509341 = | 725 (1.540) | 50 (0.130) | 8/94 | NT | 9.1% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | CP009273 | 3509369 = | 392 (0.990) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | = 3538010 | 357 (0.760) | 18 (0.050) | 11/94 | NT | 5.1% | coding (194/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase |
| ? | CP009273 | = 3538051 | 364 (0.920) | coding (153/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase | |||||
| * | ? | CP009273 | = 3613137 | NA (NA) | 15 (0.040) | 8/98 | NT | NA | coding (586/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613192 | NA (NA) | coding (641/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3613276 = | NA (NA) | 26 (0.060) | 15/106 | NT | NA | coding (725/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613329 = | NA (NA) | coding (778/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3614228 | NA (NA) | 4 (0.010) | 3/90 | NT | 100% | coding (1677/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3614368 | 0 (0.000) | coding (1817/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3614378 = | 0 (0.000) | 8 (0.020) | 4/96 | NT | 100% | coding (1827/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614473 = | NA (NA) | coding (1922/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3615265 | NA (NA) | 6 (0.010) | 4/100 | NT | 100% | coding (2714/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3615283 | 0 (0.000) | coding (2732/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3618995 | NA (NA) | 6 (0.020) | 5/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3630213 | 332 (0.700) | 66 (0.190) | 23/84 | NT | 22.2% | coding (558/1203 nt) | yhiN | putative oxidoreductase |
| ? | CP009273 | = 3630199 | 214 (0.600) | coding (572/1203 nt) | yhiN | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3632677 | NA (NA) | 5 (0.010) | 4/112 | NT | NA | intergenic (+176/+68) | pitA/uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| ? | CP009273 | = 4127852 | NA (NA) | intergenic (‑267/+8) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | CP009273 | 3652912 = | 561 (1.190) | 23 (0.060) | 8/98 | NT | 5.2% | coding (321/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated |
| ? | CP009273 | 3652940 = | 351 (0.850) | coding (349/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
| * | ? | CP009273 | = 3693271 | 286 (0.610) | 14 (0.040) | 5/94 | NT | 5.0% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small |
| ? | CP009273 | = 3693281 | 287 (0.720) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small | |||||
| * | ? | CP009273 | 3701734 = | NA (NA) | 12 (0.030) | 6/96 | NT | 8.0% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 161 (0.340) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | 3701775 = | 63 (0.130) | 7 (0.020) | 4/88 | NT | 7.5% | intergenic (‑710/+201) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701970 = | 122 (0.330) | intergenic (‑905/+6) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3701786 | 83 (0.180) | 9 (0.020) | 7/88 | NT | 12.1% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | 3701790 = | 83 (0.180) | 5 (0.010) +GTTGAGCAGGCG |
4/88 | NT | 6.4% | intergenic (‑725/+186) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701799 = | 103 (0.220) | intergenic (‑734/+177) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3707970 | 291 (0.620) | 22 (0.060) | 10/94 | NT | 8.0% | coding (1785/2334 nt) | bisC | biotin sulfoxide reductase |
| ? | CP009273 | = 3707984 | 261 (0.660) | coding (1771/2334 nt) | bisC | biotin sulfoxide reductase | |||||
| * | ? | CP009273 | = 3729681 | NA (NA) | 7 (0.020) | 3/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
| * | ? | CP009273 | = 3767664 | NA (NA) | 7 (0.020) | 7/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 3832491 = | 418 (0.890) | 27 (0.070) | 8/96 | NT | 9.0% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 187 (0.460) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
| * | ? | CP009273 | 3847022 = | NA (NA) | 10 (0.030) | 7/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
| * | ? | CP009273 | 3851553 = | 461 (0.980) | 41 (0.110) | 10/86 | NT | 12.0% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 248 (0.680) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | CP009273 | 3870904 = | NA (NA) | 3 (0.010) | 3/84 | NT | NA | intergenic (‑79/+161) | yidB/gyrB | DUF937 family protein/DNA gyrase, subunit B |
| ? | CP009273 | 3870933 = | NA (NA) | intergenic (‑108/+132) | yidB/gyrB | DUF937 family protein/DNA gyrase, subunit B | |||||
| * | ? | CP009273 | = 3888593 | 350 (0.740) | 18 (0.050) | 7/88 | NT | 5.2% | intergenic (+15/+39) | chrR/purP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | CP009273 | = 3888604 | 381 (1.030) | intergenic (+26/+28) | chrR/purP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | CP009273 | 3920778 = | 295 (0.630) | 42 (0.110) | 16/88 | NT | 13.7% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 296 (0.800) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | = 3920789 | 273 (0.580) | 20 (0.050) | 9/88 | NT | 7.3% | coding (275/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | = 3920804 | 296 (0.800) | coding (290/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | = 3921522 | 478 (1.010) | 25 (0.060) | 7/100 | NT | 5.6% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 424 (1.010) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
| * | ? | CP009273 | = 3935260 | NA (NA) | 10 (0.020) | 6/106 | NT | NA | noncoding (93/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4028965 | NA (NA) | noncoding (75/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 3999175 = | 420 (0.890) | 24 (0.060) | 10/96 | NT | 6.4% | intergenic (+84/‑49) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase |
| ? | CP009273 | 3999197 = | 346 (0.860) | intergenic (+106/‑27) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 3999963 | 590 (1.250) | 25 (0.060) | 6/98 | NT | 5.7% | coding (740/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | CP009273 | = 4000007 | 307 (0.740) | coding (784/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 4034176 | NA (NA) | 29 (0.070) | 6/92 | NT | 9.0% | intergenic (+180/+90) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | = 4034200 | 359 (0.760) | intergenic (+204/+66) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | CP009273 | = 4046794 | 484 (1.030) | 26 (0.070) | 9/94 | NT | 5.5% | intergenic (+16/+213) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein |
| ? | CP009273 | = 4046815 | 487 (1.230) | intergenic (+37/+192) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein | |||||
| * | ? | CP009273 | = 4047497 | 326 (0.690) | 43 (0.110) | 14/94 | NT | 13.4% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 283 (0.710) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | CP009273 | 4061067 = | 460 (0.970) | 36 (0.090) | 12/94 | NT | 9.9% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 266 (0.670) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | 4161825 = | NA (NA) | 24 (0.060) | 7/96 | NT | 100% | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | 4161830 = | 0 (0.000) | intergenic (+146/‑155) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | CP009273 | 4190073 = | 486 (1.030) | 81 (0.210) | 22/90 | NT | 17.9% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 355 (0.940) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | CP009273 | 4225304 = | NA (NA) | 6 (0.020) | 5/90 | NT | NA | coding (1619/1650 nt) | pgi | glucosephosphate isomerase |
| ? | CP009273 | 4225339 = | NA (NA) | intergenic (+4/‑495) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | CP009273 | 4230085 = | NA (NA) | 12 (0.030) | 7/98 | NT | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4230118 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 4306574 = | 188 (0.400) | 13 (0.030) | 11/98 | NT | 7.9% | coding (462/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | CP009273 | 4306632 = | 137 (0.330) | coding (404/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | CP009273 | = 4308345 | 551 (1.170) | 31 (0.080) | 9/94 | NT | 7.0% | coding (237/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| ? | CP009273 | = 4308403 | 356 (0.900) | coding (179/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein | |||||
| * | ? | CP009273 | 4311466 = | 646 (1.370) | 44 (0.110) | 17/94 | NT | 8.4% | coding (48/453 nt) | phnG | ribophosphonate triphosphate synthase subunit |
| ? | CP009273 | 4311493 = | 415 (1.050) | coding (21/453 nt) | phnG | ribophosphonate triphosphate synthase subunit | |||||
| * | ? | CP009273 | 4364315 = | NA (NA) | 4 (0.010) | 3/98 | NT | NA | noncoding (1/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4364345 = | NA (NA) | noncoding (31/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 4382210 | 145 (0.310) | 12 (0.030) | 9/96 | NT | 7.5% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 170 (0.420) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
| * | ? | CP009273 | = 4460267 | NA (NA) | 7 (0.020) | 5/98 | NT | NA | noncoding (70/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4460278 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 4470776 | NA (NA) | 4 (0.010) | 4/64 | NT | NA | intergenic (+33/+23) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase |
| ? | CP009273 | = 4470752 | NA (NA) | intergenic (+9/+47) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase | |||||
| * | ? | CP009273 | 4501871 = | 310 (0.660) | 23 (0.060) | 12/92 | NT | 5.8% | coding (361/957 nt) | fecD | iron‑dicitrate transporter subunit |
| ? | CP009273 | 4501966 = | 495 (1.280) | coding (266/957 nt) | fecD | iron‑dicitrate transporter subunit | |||||
| * | ? | CP009273 | 4506708 = | 378 (0.800) | 35 (0.090) | 12/94 | NT | 10.7% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 267 (0.670) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | CP009273 | 4512275 = | 416 (0.880) | 32 (0.080) | 15/92 | NT | 7.7% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 427 (1.100) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | = 4538708 | 475 (1.010) | 23 (0.060) | 8/94 | NT | 5.8% | coding (84/903 nt) | fimH | minor component of type 1 fimbriae |
| ? | CP009273 | = 4538723 | 355 (0.900) | coding (99/903 nt) | fimH | minor component of type 1 fimbriae | |||||
| * | ? | CP009273 | = 4548130 | 371 (0.790) | 18 (0.050) | 7/88 | NT | 6.0% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 276 (0.740) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||