mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 70,289 | G→T | intergenic (‑241/‑98) | araB ← / → araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| RA | 70,581 | C→T | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 70,740 | T→G | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| MC JC | 147,727 | Δ12 bp | coding (760‑771/903 nt) | rpnC → | recombination‑promoting nuclease RpnC |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 1,143,998 | C→T | G124S (GGT→AGT) | rne ← | ribonuclease E |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,917,345 | G→A | G763G (GGG→GGA) | barA → | sensory histidine kinase BarA |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,566,544 | C→A | S13I (AGC→ATC) | glgP ← | glycogen phosphorylase |
| MC JC | 3,815,859 | Δ82 bp | [rph] | [rph] | |
| RA | 4,128,351 | 2 bp→CA | coding (44‑45/318 nt) | metJ ← | DNA‑binding transcriptional repressor MetJ |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1293042 | 1300892 | 7851 | 45 [0] | [0] 42 | tdk–insH21 | tdk,insZ,adhE,ychE,insH21 |
| * | * | ÷ | NC_000913 | 3423810–3424234 | 3424502–3424238 | 5–693 | 4 [1] | [0] 5 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 42 (0.250) | 36/298 | 1.3 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1300893 = | 0 (0.000) | intergenic (+346/‑289) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1207790 = | 1 (0.010) | 36 (0.240) | 30/266 | 1.4 | 96.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 2 (0.010) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 1 (0.010) | 66 (0.440) | 48/266 | 0.8 | 97.9% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 2 (0.010) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1293041 | 0 (0.000) | 45 (0.270) | 35/298 | 1.4 | 100% | intergenic (‑119/‑486) | hns/tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 2822705 = | 76 (0.450) | 371 (2.680) +27 bp |
100/244 | 0.1 | 71.9% | intergenic (‑66/+3) | recX/recA | RecA inhibitor RecX/DNA recombination/repair protein RecA |
| ? | NC_000913 | 4171753 = | 279 (1.650) | noncoding (117/120 nt) | rrfB | 5S ribosomal RNA | |||||
| * | ? | NC_000913 | 2822705 = | 76 (0.450) | 32 (0.230) +28 bp |
14/242 | 2.3 | 21.1% | intergenic (‑66/+3) | recX/recA | RecA inhibitor RecX/DNA recombination/repair protein RecA |
| ? | NC_000913 | = 4171809 | 220 (1.300) | intergenic (+53/‑248) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||