BRESEQ :: Mutation Predictions

breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	1,484,303	T→G	V125G (GTC→GGC)	yhdX →	amino acid ABC transporter permease
RA	1,844,030	T→C	N269S (AAC→AGC)	gacS ←	sensor protein GacS
MC JC	3,827,335	Δ51 bp	coding (626‑676/1020 nt)	ptxS ←	2‑ketogluconate utilization repressor
RA	4,743,195	+C	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,197	A→G	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,199	C→T	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,202	C→T	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,205	C→G	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,207	2 bp→CT	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,221	C→T	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,223	A→C	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,226	2 bp→GC	intergenic (+495/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	6183852	6183858	7	401 [0]	[0] NA	atpI/–	ATP synthase protein I/–

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1 =	0 (0.000)	398 (1.150)	164/278	0.2	100%	intergenic (–/+146)	–/parB	–/chromosome‑partitioning protein
*	?	NC_002947	= 6183851	0 (0.000)	398 (1.150)	164/278	0.2	100%	intergenic (‑3/–)	atpI/–	ATP synthase protein I/–