breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]
MC JC	1,299,499	Δ1,199 bp		insH21	insH21
MC JC	1,978,503	Δ776 bp		insB‑5–insA‑5	insB‑5, insA‑5
RA	2,173,363	Δ2 bp	pseudogene (915‑916/1358 nt)	gatC ←	galactitol‑specific PTS enzyme IIC component
RA	3,560,455	+G	pseudogene (151/758 nt)	glpR ←	DNA‑binding transcriptional repressor GlpR
RA	4,296,381	+GC	intergenic (+587/+55)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423767–3424234	3424546–3424238	5–780	36 [33]	[32] 38	[rrfD]–[rrlD]	[rrfD],[rrlD]
*	*	÷	NC_000913	3486111	3486783	673	34 [29]	[33] 34	crp	crp