mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 1,157,887 | G→T | A7S (GCT→TCT) | ptsG → | glucose‑specific PTS enzyme IIBC component |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| JC JC | 3,410,277 | IS1 (+) +9 bp | [dusB] | [dusB] | |
| RA | 3,535,018 | A→C | F284C (TTT→TGT) | envZ ← | sensory histidine kinase EnvZ |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| JC | 4,186,115 | (TTCCGCTGG)1→2 | coding (766/4224 nt) | rpoC → | RNA polymerase subunit beta' |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 915145 | 915274 | 130 | 18 [15] | [15] 18 | lysO/aqpZ | L‑lysine exporter/water channel AqpZ |
| * | * | ÷ | NC_000913 | 1209603 | 1209618 | 16 | 50 [0] | [1] 92 | stfE | e14 prophage; putative side tail fiber protein fragment |
| * | * | ÷ | NC_000913 | 3423769–3424538 | 3424538 | 1–770 | 19 [17] | [17] 19 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3486119 | 3486785 | 667 | 18 [8] | [16] 22 | crp | crp |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 1 (0.020) | 66 (1.200) | 44/224 | 0.0 | 99.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 0 (0.000) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 1 (0.020) | 46 (0.840) | 28/224 | 0.5 | 99.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 0 (0.000) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 35 (0.560) | 15/256 | 2.3 | 42.7% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4118287 | 47 (0.750) | intergenic (‑197/‑228) | glpF/zapB | glycerol facilitator/cell division factor ZapB | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 39 (0.620) | 22/256 | 1.3 | 46.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4118284 = | 45 (0.720) | intergenic (‑194/‑231) | glpF/zapB | glycerol facilitator/cell division factor ZapB | |||||