mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 126,831 | T→A | 8.3% | D306V (GAC→GTC) | yacH ← | uncharacterized protein |
| RA | 397,148 | A→T | 5.5% | intergenic (+46/‑55) | iraP → / → phoA | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein/bacterial alkaline phosphatase |
| RA | 440,705 | A→C | 5.2% | intergenic (+75/+53) | yajQ → / ← yajR | phage Phi6 host factor, ATP/GTP binding protein/putative transporter |
| RA | 793,662 | C→T | 7.9% | A76T (GCA→ACA) | ybhA ← | pyridoxal phosphate (PLP) phosphatase |
| RA | 793,668 | A→T | 7.9% | Y74N (TAT→AAT) | ybhA ← | pyridoxal phosphate (PLP) phosphatase |
| RA | 793,674 | A→G | 7.7% | Y72H (TAT→CAT) | ybhA ← | pyridoxal phosphate (PLP) phosphatase |
| RA | 1,016,418 | C→A | 100% | intergenic (‑43/‑176) | sulA ← / → sxy | SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor |
| RA | 1,023,565 | T→C | 5.2% | L55P (CTG→CCG) | yccU → | putative CoA‑binding protein |
| RA | 1,134,286 | Δ1 bp | 6.3% | coding (453/1644 nt) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,134,287 | Δ1 bp | 6.4% | coding (454/1644 nt) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,231,142 | A→G | 6.6% | intergenic (+29/+23) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,231,143 | A→T | 6.6% | intergenic (+30/+22) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,231,144 | A→T | 7.0% | intergenic (+31/+21) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,231,145 | C→T | 5.9% | intergenic (+32/+20) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,231,414 | Δ1 bp | 6.9% | coding (1284/1533 nt) | ycgB ← | SpoVR family stationary phase protein |
| RA | 1,231,416 | G→T | 7.0% | R428R (CGG→AGG) | ycgB ← | SpoVR family stationary phase protein |
| RA | 1,476,479 | A→T | 5.8% | intergenic (+21/+33) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,511,312 | C→A | 6.5% | intergenic (+53/+44) | patD → / ← yncL | gamma‑aminobutyraldehyde dehydrogenase/stress‑induced small inner membrane enterobacterial protein |
| RA | 1,572,927:1 | +T | 5.7% | coding (673/1686 nt) | yddA ← | putative multidrug transporter subunit of ABC superfamily, membrane component/ATP‑binding component |
| RA | 1,669,212 | A→T | 5.8% | intergenic (+8/+17) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,669,215 | A→T | 5.0% | intergenic (+11/+14) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,845,137 | C→T | 5.3% | Y7Y (TAC→TAT) | ansA → | cytoplasmic L‑asparaginase 1 |
| JC JC | 1,972,762 | IS5 (–) +4 bp | 100% | intergenic (‑308/‑469) | flhD ← / → uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| RA | 2,470,457 | T→A | 7.8% | S218C (AGT→TGT) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,525,448 | T→A | 5.1% | N209K (AAT→AAA) | cysZ → | EI24 family inner membrane protein; putative sulfate transporter |
| RA | 2,525,449 | A→C | 5.1% | M210L (ATG→CTG) | cysZ → | EI24 family inner membrane protein; putative sulfate transporter |
| RA | 2,899,086 | T→G | 6.5% | L6R (CTA→CGA) | ygcG → | uncharacterized protein |
| RA | 2,899,089 | T→A | 6.4% | M7K (ATG→AAG) | ygcG → | uncharacterized protein |
| RA | 2,899,092 | T→G | 6.2% | F8C (TTC→TGC) ‡ | ygcG → | uncharacterized protein |
| RA | 2,899,093 | C→A | 6.3% | F8L (TTC→TTA) ‡ | ygcG → | uncharacterized protein |
| RA | 2,899,096 | T→A | 6.6% | T9T (ACT→ACA) | ygcG → | uncharacterized protein |
| RA | 2,899,099 | C→A | 7.3% | F10L (TTC→TTA) | ygcG → | uncharacterized protein |
| RA | 3,174,040 | C→T | 5.4% | R87R (CGC→CGT) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,174,044 | T→C | 5.3% | S89P (TCA→CCA) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,174,049 | G→A | 5.4% | W90* (TGG→TGA) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,174,053 | A→G | 5.4% | T92A (ACG→GCG) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,186,299 | G→A | 5.5% | G26E (GGA→GAA) | yqiK → | PHB family membrane protein, function unknown |
| RA | 3,339,178 | C→G | 6.6% | A368G (GCC→GGC) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,339,187 | C→G | 6.3% | A371G (GCC→GGC) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,493,173 | T→A | 7.0% | intergenic (+199/‑96) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,493,180 | T→A | 6.2% | intergenic (+206/‑89) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,509,144 | G→T | 5.8% | L43L (CTC→CTA) | dam ← | DNA adenine methyltransferase |
| RA | 3,661,065 | A→T | 5.4% | intergenic (‑125/+86) | gadA ← / ← yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
| RA | 3,661,067 | A→T | 5.1% | intergenic (‑127/+84) | gadA ← / ← yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
| RA | 3,661,071 | T→G | 5.1% | intergenic (‑131/+80) | gadA ← / ← yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
| RA | 3,661,075 | C→A | 5.0% | intergenic (‑135/+76) | gadA ← / ← yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
| RA | 3,854,875 | C→A | 5.8% | pseudogene (473/815 nt) | glvG ← | pseudogene; probable 6‑phospho‑beta‑glucosidase |
| RA | 3,854,877 | A→C | 5.8% | pseudogene (471/815 nt) | glvG ← | pseudogene; probable 6‑phospho‑beta‑glucosidase |
| RA | 3,854,879 | G→A | 5.9% | pseudogene (469/815 nt) | glvG ← | pseudogene; probable 6‑phospho‑beta‑glucosidase |
| RA | 3,854,882 | T→C | 5.5% | pseudogene (466/815 nt) | glvG ← | pseudogene; probable 6‑phospho‑beta‑glucosidase |
| RA | 3,854,884 | G→T | 5.5% | pseudogene (464/815 nt) | glvG ← | pseudogene; probable 6‑phospho‑beta‑glucosidase |
| RA | 3,854,886 | T→G | 5.7% | pseudogene (462/815 nt) | glvG ← | pseudogene; probable 6‑phospho‑beta‑glucosidase |
| RA | 3,888,770 | A→G | 100% | I400I (ATT→ATC) | purP ← | adenine permease, high affinity; adenine:H+ symporter |
| RA | 4,133,364 | Δ1 bp | 6.3% | coding (907/1080 nt) | frwC → | putative enzyme IIC component of PTS |
| RA | 4,197,504 | A→G | 5.3% | intergenic (‑44/‑571) | purH ← / → rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon |
| RA | 4,197,519 | C→T | 5.6% | intergenic (‑59/‑556) | purH ← / → rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon |
| RA | 4,217,483 | A→T | 5.1% | intergenic (+44/‑176) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,529,966 | C→G | 5.0% | intergenic (‑648/‑808) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 454259 | 456729 | 2471 | 57 [55] | [53] 57 | lon | lon |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 138135 = | 77 (0.710) | 6 (0.060) | 4/246 | NT | 7.3% | coding (218/537 nt) | hpt | hypoxanthine phosphoribosyltransferase |
| ? | CP009273 | 138204 = | 78 (0.730) | coding (287/537 nt) | hpt | hypoxanthine phosphoribosyltransferase | |||||
| * | ? | CP009273 | = 220697 | NA (NA) | 3 (0.030) | 3/246 | NT | NA | noncoding (440/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220750 | NA (NA) | noncoding (493/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 224541 | NA (NA) | 4 (0.040) | 4/242 | NT | NA | noncoding (2296/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 224580 | NA (NA) | noncoding (2335/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 224765 = | NA (NA) | 5 (0.050) | 5/246 | NT | NA | noncoding (2520/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 224790 = | NA (NA) | noncoding (2545/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 224958 | NA (NA) | 3 (0.030) | 3/242 | NT | NA | noncoding (2713/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 224985 | NA (NA) | noncoding (2740/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 243076 | 97 (0.890) | 8 (0.080) | 6/234 | NT | 7.8% | intergenic (‑87/‑123) | dinJ/yafL | antitoxin of YafQ‑DinJ toxin‑antitoxin system/putative lipoprotein and C40 family peptidase |
| ? | CP009273 | = 243127 | 98 (0.970) | intergenic (‑138/‑72) | dinJ/yafL | antitoxin of YafQ‑DinJ toxin‑antitoxin system/putative lipoprotein and C40 family peptidase | |||||
| * | ? | CP009273 | 269746 = | NA (NA) | 7 (0.070) | 6/248 | NT | NA | noncoding (1115/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269797 = | NA (NA) | noncoding (1064/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 270586 = | NA (NA) | 3 (0.030) | 3/244 | NT | NA | noncoding (46/1221 nt) | IS30 | repeat region |
| ? | CP009273 | 270657 = | NA (NA) | noncoding (117/1221 nt) | IS30 | repeat region | |||||
| * | ? | CP009273 | 270650 = | NA (NA) | 7 (0.070) | 6/246 | NT | NA | noncoding (110/1221 nt) | IS30 | repeat region |
| ? | CP009273 | 270698 = | NA (NA) | noncoding (158/1221 nt) | IS30 | repeat region | |||||
| * | ? | CP009273 | 311702 = | NA (NA) | 5 (0.050) | 5/244 | NT | NA | coding (405/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | 311725 = | NA (NA) | coding (428/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 327493 = | 85 (0.780) | 8 (0.080) | 4/238 | NT | 9.4% | intergenic (+286/‑589) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| ? | CP009273 | 327544 = | 74 (0.720) | intergenic (+337/‑538) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase | |||||
| * | ? | CP009273 | 360104 = | 113 (1.040) | 196 (1.800) | 128/252 | NT | 63.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 377566 = | NA (NA) | 4 (0.040) | 4/242 | NT | NA | coding (437/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | 377597 = | NA (NA) | coding (468/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 652762 | 87 (0.800) | 6 (0.060) | 4/240 | NT | 6.6% | coding (15/210 nt) | cspE | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
| ? | CP009273 | = 652777 | 87 (0.840) | coding (30/210 nt) | cspE | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein | |||||
| * | ? | CP009273 | 844230 = | 98 (0.900) | 6 (0.060) | 4/238 | NT | 6.4% | coding (138/504 nt) | dps | Fe‑binding and storage protein; stress‑inducible DNA‑binding protetin |
| ? | CP009273 | 844346 = | 84 (0.820) | coding (22/504 nt) | dps | Fe‑binding and storage protein; stress‑inducible DNA‑binding protetin | |||||
| * | ? | CP009273 | = 927463 | 98 (0.900) | 6 (0.060) | 4/244 | NT | 5.8% | coding (44/966 nt) | trxB | thioredoxin reductase, FAD/NAD(P)‑binding |
| ? | CP009273 | = 927500 | 101 (0.960) | coding (7/966 nt) | trxB | thioredoxin reductase, FAD/NAD(P)‑binding | |||||
| * | ? | CP009273 | = 1005669 | 104 (0.950) | 8 (0.080) | 8/236 | NT | 6.7% | coding (250/1908 nt) | uup | putative transporter subunit of ABC superfamily: ATP‑binding component |
| ? | CP009273 | = 1005713 | 126 (1.240) | coding (294/1908 nt) | uup | putative transporter subunit of ABC superfamily: ATP‑binding component | |||||
| * | ? | CP009273 | = 1164315 | 79 (0.730) | 4 (0.040) | 4/242 | NT | 5.1% | intergenic (‑27/‑214) | ycfQ/bhsA | repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein |
| ? | CP009273 | = 1164346 | 72 (0.690) | intergenic (‑58/‑183) | ycfQ/bhsA | repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein | |||||
| * | ? | CP009273 | 1203246 = | 18 (0.170) | 58 (0.610) | 51/220 | NT | 81.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 11 (0.120) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 17 (0.160) | 109 (1.150) | 73/220 | NT | 89.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 11 (0.120) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1390389 = | NA (NA) | 6 (0.060) | 5/246 | NT | NA | coding (57/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | 1390416 = | NA (NA) | coding (84/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | CP009273 | = 1542255 | 104 (0.950) | 8 (0.080) | 4/240 | NT | 7.5% | coding (598/3048 nt) | fdnG | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| ? | CP009273 | = 1542279 | 99 (0.950) | coding (622/3048 nt) | fdnG | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible | |||||
| * | ? | CP009273 | = 1639237 | 75 (0.690) | 6 (0.060) | 6/240 | NT | 8.3% | intergenic (‑78/+139) | rem/hokD | Qin prophage; uncharacterized protein/Qin prophage; small toxic polypeptide |
| ? | CP009273 | = 1639285 | 62 (0.600) | intergenic (‑126/+91) | rem/hokD | Qin prophage; uncharacterized protein/Qin prophage; small toxic polypeptide | |||||
| * | ? | CP009273 | 1767568 = | 95 (0.870) | 6 (0.060) | 6/242 | NT | 5.9% | coding (800/1266 nt) | ydiN | MFS transporter superfamily protein |
| ? | CP009273 | 1767646 = | 99 (0.950) | coding (878/1266 nt) | ydiN | MFS transporter superfamily protein | |||||
| * | ? | CP009273 | = 1811855 | 98 (0.900) | 6 (0.060) | 3/246 | NT | 5.7% | coding (903/1353 nt) | chbF | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity |
| ? | CP009273 | = 1811909 | 104 (0.980) | coding (849/1353 nt) | chbF | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity | |||||
| * | ? | CP009273 | 1882978 = | 83 (0.760) | 6 (0.060) | 4/242 | NT | 7.7% | coding (1026/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| ? | CP009273 | 1883001 = | 65 (0.620) | coding (1003/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) | |||||
| * | ? | CP009273 | = 1929049 | 120 (1.100) | 8 (0.080) | 6/236 | NT | 6.9% | intergenic (‑188/+47) | edd/zwf | 6‑phosphogluconate dehydratase/glucose‑6‑phosphate 1‑dehydrogenase |
| ? | CP009273 | = 1929086 | 103 (1.010) | intergenic (‑225/+10) | edd/zwf | 6‑phosphogluconate dehydratase/glucose‑6‑phosphate 1‑dehydrogenase | |||||
| * | ? | CP009273 | = 1953065 | 122 (1.120) | 8 (0.080) | 5/242 | NT | 7.0% | coding (459/747 nt) | cutC | copper homeostasis protein |
| ? | CP009273 | = 1953141 | 94 (0.900) | coding (383/747 nt) | cutC | copper homeostasis protein | |||||
| * | ? | CP009273 | 1975002 = | 79 (0.730) | 4 (0.040) | 4/246 | NT | 5.2% | coding (92/1425 nt) | otsA | trehalose‑6‑phosphate synthase |
| ? | CP009273 | 1975043 = | 69 (0.650) | coding (51/1425 nt) | otsA | trehalose‑6‑phosphate synthase | |||||
| * | ? | CP009273 | = 2060164 | NA (NA) | 5 (0.050) | 5/244 | NT | NA | noncoding (671/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2060183 | NA (NA) | noncoding (652/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 2101005 = | 80 (0.730) | 4 (0.040) | 4/240 | NT | 5.5% | coding (806/1104 nt) | glf | UDP‑galactopyranose mutase, FAD/NAD(P)‑binding |
| ? | CP009273 | 2101064 = | 61 (0.590) | coding (747/1104 nt) | glf | UDP‑galactopyranose mutase, FAD/NAD(P)‑binding | |||||
| * | ? | CP009273 | = 2140320 | 114 (1.050) | 6 (0.060) | 6/240 | NT | 5.1% | coding (702/849 nt) | alkA | 3‑methyl‑adenine DNA glycosylase II |
| ? | CP009273 | = 2140333 | 114 (1.100) | coding (689/849 nt) | alkA | 3‑methyl‑adenine DNA glycosylase II | |||||
| * | ? | CP009273 | 2344573 = | 103 (0.950) | 6 (0.060) | 4/248 | NT | 5.7% | coding (1281/1359 nt) | glpT | sn‑glycerol‑3‑phosphate transporter |
| ? | CP009273 | 2344622 = | 98 (0.910) | coding (1232/1359 nt) | glpT | sn‑glycerol‑3‑phosphate transporter | |||||
| * | ? | CP009273 | 2358674 = | 95 (0.870) | 5 (0.050) | 4/246 | NT | 5.3% | coding (426/603 nt) | ais | putative LPS core heptose(II)‑phosphate phosphatase |
| ? | CP009273 | 2358710 = | 87 (0.820) | coding (390/603 nt) | ais | putative LPS core heptose(II)‑phosphate phosphatase | |||||
| * | ? | CP009273 | 2433101 = | 115 (1.060) | 10 (0.090) | 4/252 | NT | 7.4% | coding (499/1179 nt) | yfcJ | putative arabinose efflux transporter |
| ? | CP009273 | 2433128 = | 134 (1.230) | coding (472/1179 nt) | yfcJ | putative arabinose efflux transporter | |||||
| * | ? | CP009273 | 2481278 = | 83 (0.760) | 6 (0.060) | 6/240 | NT | 6.6% | coding (3426/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| ? | CP009273 | 2481319 = | 91 (0.880) | coding (3467/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA | |||||
| * | ? | CP009273 | = 2648343 | 95 (0.920) | 6 (0.060) | 5/240 | NT | 5.9% | noncoding (15/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 2648405 | NA (NA) | noncoding (77/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 2847653 = | 109 (1.000) | 6 (0.060) | 4/242 | NT | 5.1% | intergenic (+30/‑44) | hypE/fhlA | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein/formate hydrogenlyase transcriptional activator |
| ? | CP009273 | 2847704 = | 120 (1.150) | coding (8/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator | |||||
| * | ? | CP009273 | = 2908168 | 91 (0.840) | 5 (0.050) | 4/250 | NT | 5.5% | coding (192/1302 nt) | rlmD | 23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
| ? | CP009273 | = 2908214 | 80 (0.740) | coding (146/1302 nt) | rlmD | 23S rRNA m(5)U1939 methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | = 2955457 | 88 (0.810) | 5 (0.050) | 5/236 | NT | 5.2% | coding (331/3369 nt) | recC | exonuclease V (RecBCD complex), gamma chain |
| ? | CP009273 | = 2955484 | 100 (0.980) | coding (304/3369 nt) | recC | exonuclease V (RecBCD complex), gamma chain | |||||
| * | ? | CP009273 | 3285467 = | 88 (0.810) | 5 (0.050) | 5/240 | NT | 5.9% | coding (768/1092 nt) | yraK | putative fimbrial‑like adhesin protein |
| ? | CP009273 | 3285504 = | 76 (0.730) | coding (805/1092 nt) | yraK | putative fimbrial‑like adhesin protein | |||||
| * | ? | CP009273 | = 3420680 | NA (NA) | 3 (0.030) | 3/244 | NT | 20.5% | noncoding (1442/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | CP009273 | 4199538 = | 12 (0.110) | noncoding (1464/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | 3458595 = | 92 (0.840) | 6 (0.060) | 4/238 | NT | 6.2% | coding (155/462 nt) | gspM | general secretory pathway component, cryptic |
| ? | CP009273 | 3458686 = | 95 (0.920) | coding (246/462 nt) | gspM | general secretory pathway component, cryptic | |||||
| * | ? | CP009273 | = 3462152 | 95 (0.870) | 5 (0.050) | 5/238 | NT | 5.1% | coding (1061/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | = 3462162 | 96 (0.930) | coding (1051/2694 nt) | chiA | periplasmic endochitinase | |||||
| * | ? | CP009273 | = 3661788 | 97 (0.890) | 5 (0.050) | 3/244 | NT | 5.8% | coding (761/1398 nt) | yhjA | putative cytochrome C peroxidase |
| ? | CP009273 | = 3661837 | 70 (0.660) | coding (712/1398 nt) | yhjA | putative cytochrome C peroxidase | |||||
| * | ? | CP009273 | = 3857176 | 87 (0.800) | 5 (0.050) | 5/236 | NT | 5.5% | intergenic (‑213/‑83) | glvC/yidP | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component/UTRA domain‑containing GntR family putative transcriptional regulator |
| ? | CP009273 | = 3857181 | 90 (0.880) | intergenic (‑218/‑78) | glvC/yidP | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component/UTRA domain‑containing GntR family putative transcriptional regulator | |||||
| * | ? | CP009273 | 4030387 = | 35 (0.320) | 3 (0.030) | 3/244 | NT | 5.4% | noncoding (1497/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon |
| ? | CP009273 | 4199618 = | 71 (0.670) | intergenic (+2/‑84) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | CP009273 | 4046850 = | NA (NA) | 3 (0.030) | 3/244 | NT | NA | intergenic (+72/+157) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein |
| ? | CP009273 | 4046902 = | NA (NA) | noncoding (13/84 nt) | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 4532499 = | 74 (0.680) | 28 (0.280) | 27/234 | NT | 33.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 45 (0.450) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4532507 | 74 (0.680) | 51 (0.500) | 45/234 | NT | 47.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 45 (0.450) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||