breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 793,557 C→A A111S (GCA→TCA)  ybhA ← pyridoxal phosphate (PLP) phosphatase
RA 2,399,955 C→A E56* (GAA→TAA)  lrhA ← transcriptional repressor of flagellar, motility and chemotaxis genes
RA 3,434,282 C→A G36V (GGC→GTC)  rpoA ← RNA polymerase, alpha subunit

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 2208303 2209108 806 47 [42] [35] 45 mlrA mlrA

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 360104 =131 (1.060)150 (1.210) 49/268 0.5 53.4% intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 NA (NA)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
* ? CP009273 1203246 =3 (0.020)120 (1.100) 60/236 0.1 97.3% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 1205075 = 4 (0.040)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? CP009273 = 12032612 (0.020)112 (1.030) 39/236 0.7 97.5% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 = 1205058 4 (0.040)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related