mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 90,287 | T→A | 6.0% | L212H (CTT→CAT) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
| RA | 90,292 | T→A | 7.0% | Y214N (TAT→AAT) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
| RA | 90,297 | T→A | 6.9% | H215Q (CAT→CAA) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
| RA | 141,885 | T→A | 5.2% | V106V (GTT→GTA) | yadE → | putative polysaccharide deacetylase lipoprotein |
| RA | 289,531 | T→A | 5.2% | Q33H (CAA→CAT) | yagL ← | CP4‑6 prophage; DNA‑binding protein |
| RA | 419,009 | G→A | 6.5% | G346R (GGG→AGG) | malZ → | maltodextrin glucosidase |
| RA | 714,651 | C→A | 6.0% | M422I (ATG→ATT) | speF ← | ornithine decarboxylase isozyme, inducible |
| RA | 753,002 | A→T | 5.8% | D547V (GAT→GTT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 879,876 | G→A | 5.4% | E250K (GAG→AAG) | mdfA → | multidrug efflux system protein |
| RA | 1,083,287 | C→T | 5.4% | V6I (GTA→ATA) | pgaC ← | biofilm PGA synthase PgaCD, catalytic subunit; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase; c‑di‑GMP‑stimulated activity and dimerization |
| RA | 1,155,563 | G→A | 5.5% | T482M (ACG→ATG) | fhuE ← | ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,155,580 | G→A | 6.0% | T476T (ACC→ACT) | fhuE ← | ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,179,837 | C→A | 6.2% | G22C (GGC→TGC) | potB ← | polyamine transporter subunit |
| RA | 1,290,071 | A→T | 5.2% | pseudogene (378/567 nt) | insZ ← | pseudogene, transposase homolog |
| RA | 1,314,824 | A→T | 7.6% | F273Y (TTT→TAT) | trpD ← | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| RA | 1,393,920 | G→C | 6.6% | intergenic (‑137/+58) | fnr ← / ← ogt | oxygen‑sensing anaerobic growth regulon transcriptional regulator; autorepressor/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| RA | 1,393,921 | T→A | 6.5% | intergenic (‑138/+57) | fnr ← / ← ogt | oxygen‑sensing anaerobic growth regulon transcriptional regulator; autorepressor/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| RA | 1,393,922 | T→A | 6.5% | intergenic (‑139/+56) | fnr ← / ← ogt | oxygen‑sensing anaerobic growth regulon transcriptional regulator; autorepressor/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| RA | 1,393,923 | G→C | 6.5% | intergenic (‑140/+55) | fnr ← / ← ogt | oxygen‑sensing anaerobic growth regulon transcriptional regulator; autorepressor/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| RA | 1,530,562 | C→A | 5.1% | G105C (GGC→TGC) | narV ← | nitrate reductase 2 (NRZ), gamma subunit |
| RA | 1,568,127 | C→A | 5.5% | E445* (GAA→TAA) | pqqL ← | putative periplasmic M16 family zinc metalloendopeptidase |
| RA | 1,591,814 | A→G | 5.6% | pseudogene (431/5323 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,610,185 | A→T | 5.6% | T56S (ACA→TCA) | yneK → | uncharacterized protein |
| RA | 1,642,600 | Δ1 bp | 6.1% | intergenic (+2/‑165) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,642,605 | C→T | 6.2% | intergenic (+7/‑160) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,642,606 | A→G | 6.2% | intergenic (+8/‑159) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,642,610:1 | +T | 6.1% | intergenic (+12/‑155) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,708,015 | C→A | 6.6% | I330I (ATC→ATA) | dtpA → | dipeptide and tripeptide permease A |
| RA | 1,743,488 | C→A | 5.5% | G110V (GGG→GTG) | ydhT ← | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| RA | 1,747,598 | C→A | 5.2% | G164C (GGT→TGT) | ydhV ← | putative oxidoreductase subunit |
| RA | 1,750,025 | T→A | 6.4% | L24Q (CTG→CAG) | pykF → | pyruvate kinase I |
| RA | 1,764,644 | C→T | 5.2% | noncoding (16/106 nt) | rprA → | sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,764,647 | A→G | 5.4% | noncoding (19/106 nt) | rprA → | sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,806,672 | T→A | 5.8% | K240* (AAA→TAA) | ydjO ← | uncharacterized protein |
| RA | 2,018,293 | A→T | 5.3% | N4K (AAT→AAA) | dsrB ← | uncharacterized protein |
| RA | 2,056,835 | C→A | 5.1% | intergenic (‑31/+34) | ldtA ← / ← cobT | L,D‑transpeptidase linking Lpp to murein/nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| RA | 2,056,837 | G→T | 5.1% | intergenic (‑33/+32) | ldtA ← / ← cobT | L,D‑transpeptidase linking Lpp to murein/nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| RA | 2,056,839 | T→A | 5.3% | intergenic (‑35/+30) | ldtA ← / ← cobT | L,D‑transpeptidase linking Lpp to murein/nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| RA | 2,082,677 | T→A | 5.7% | intergenic (‑68/+15) | yeeZ ← / ← yoeB | putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
| RA | 2,082,678 | A→T | 5.9% | intergenic (‑69/+14) | yeeZ ← / ← yoeB | putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
| RA | 2,082,679 | T→A | 5.7% | intergenic (‑70/+13) | yeeZ ← / ← yoeB | putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
| RA | 2,110,941 | T→C | 6.7% | E315E (GAA→GAG) | wcaK ← | colanic acid biosynthesis protein |
| RA | 2,133,433 | T→G | 5.9% | D554A (GAT→GCT) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,133,437 | T→A | 5.9% | I553F (ATT→TTT) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,133,439 | A→T | 5.6% | L552Q (CTG→CAG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,133,441 | T→A | 5.6% | K551N (AAA→AAT) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,133,445 | C→A | 5.4% | S550I (AGC→ATC) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,135,815 | T→G | 5.6% | K205N (AAA→AAC) | udk ← | uridine/cytidine kinase |
| RA | 2,222,656 | A→C | 9.7% | intergenic (+112/+261) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,318,923 | T→A | 6.0% | L230Q (CTA→CAA) | atoE → | short chain fatty acid transporter |
| RA | 2,423,423 | G→T | 7.4% | L99I (CTT→ATT) | purF ← | amidophosphoribosyltransferase |
| RA | 2,577,619 | A→T | 5.3% | T422T (ACT→ACA) | aegA ← | putative oxidoreductase, FeS binding subunit/NAD/FAD‑binding subunit |
| RA | 2,980,462 | C→T | 6.2% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,980,463 | T→A | 6.3% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,980,464 | A→G | 6.4% | intergenic (+29/‑431) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,999,247 | C→T | 5.3% | intergenic (‑102/‑374) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| RA | 2,999,248 | A→C | 5.3% | intergenic (‑103/‑373) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| RA | 2,999,250 | A→T | 5.3% | intergenic (‑105/‑371) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| RA | 2,999,252 | G→T | 5.3% | intergenic (‑107/‑369) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| RA | 2,999,253 | A→G | 5.3% | intergenic (‑108/‑368) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| RA | 3,038,238 | A→C | 5.8% | E406D (GAA→GAC) | bglA → | 6‑phospho‑beta‑glucosidase A |
| RA | 3,198,441 | Δ1 bp | 5.2% | coding (389/618 nt) | plsY → | putative glycerol‑3‑phosphate acyltransferase |
| RA | 3,219,590 | G→A | 5.4% | intergenic (+60/‑3) | ebgC → / → ygjI | evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter |
| RA | 3,219,594 | T→C | 5.3% | M1T (ATG→ACG) † | ygjI → | putative transporter |
| RA | 3,219,597 | C→T | 5.4% | S2F (TCT→TTT) | ygjI → | putative transporter |
| RA | 3,219,600 | A→G | 5.5% | D3G (GAT→GGT) | ygjI → | putative transporter |
| RA | 3,219,603 | C→T | 5.5% | T4I (ACC→ATC) | ygjI → | putative transporter |
| RA | 3,219,606 | A→G | 5.7% | K5R (AAA→AGA) | ygjI → | putative transporter |
| RA | 3,219,609 | G→A | 5.9% | R6H (CGT→CAT) | ygjI → | putative transporter |
| RA | 3,220,633 | G→T | 5.9% | L347L (CTG→CTT) | ygjI → | putative transporter |
| RA | 3,479,649 | T→A | 6.3% | G57G (GGT→GGA) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,646,976 | T→A | 5.1% | pseudogene (386/483 nt) | yhiS → | pseudogene |
| RA | 3,782,235 | Δ1 bp | 5.6% | coding (775/960 nt) | yibQ → | putative polysaccharide deacetylase |
| RA | 3,870,279 | C→T | 6.7% | G12S (GGC→AGC) | yidA ← | sugar phosphate phosphatase; substrates include erythrose 4‑P and mannose 1‑P phosphatase |
| RA | 3,870,283 | C→G | 6.7% | M10I (ATG→ATC) | yidA ← | sugar phosphate phosphatase; substrates include erythrose 4‑P and mannose 1‑P phosphatase |
| RA | 3,870,288 | C→G | 6.4% | D9H (GAT→CAT) | yidA ← | sugar phosphate phosphatase; substrates include erythrose 4‑P and mannose 1‑P phosphatase |
| RA | 3,870,292 | A→G | 6.5% | A7A (GCT→GCC) | yidA ← | sugar phosphate phosphatase; substrates include erythrose 4‑P and mannose 1‑P phosphatase |
| RA | 3,908,615 | C→A | 5.3% | intergenic (‑55/+298) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,617 | A→G | 5.3% | intergenic (‑57/+296) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,618 | C→T | 5.5% | intergenic (‑58/+295) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,620 | T→G | 5.5% | intergenic (‑60/+293) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,629 | T→A | 5.3% | intergenic (‑69/+284) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,908,630 | C→G | 5.1% | intergenic (‑70/+283) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,960,130 | A→C | 5.3% | E118D (GAA→GAC) | rho → | transcription termination factor |
| RA | 4,156,331 | A→G | 13.8% | intergenic (+118/‑256) | murI → / → rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| RA | 4,203,303 | C→A | 5.8% | Q48K (CAA→AAA) | yjaA → | stress‑induced protein |
| RA | 4,218,351 | C→A | 7.0% | A231A (GCC→GCA) | yjbB → | putative Na+/Pi‑cotransporter |
| RA | 4,247,111 | T→A | 6.0% | G23G (GGT→GGA) | lexA → | transcriptional repressor of SOS regulon |
| RA | 4,567,137 | T→G | 5.1% | L213F (TTA→TTC) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| RA | 4,567,146 | A→T | 6.1% | R210R (CGT→CGA) ‡ | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| RA | 4,567,148 | G→T | 5.7% | R210S (CGT→AGT) ‡ | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 4249395 | 4249979 | 585 | 45 [41] | [43] 45 | zur | zur |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 224635 = | NA (NA) | 4 (0.040) | 4/252 | NT | NA | noncoding (2390/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 224679 = | NA (NA) | noncoding (2434/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 270095 = | NA (NA) | 6 (0.070) | 4/248 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 270133 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 311750 = | NA (NA) | 6 (0.070) | 4/238 | NT | NA | coding (453/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | 311790 = | NA (NA) | coding (493/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 360104 = | 69 (0.750) | 159 (1.720) | 115/254 | NT | 69.7% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 445945 = | 88 (0.950) | 6 (0.070) | 4/240 | NT | 7.1% | coding (153/1992 nt) | cyoB | cytochrome o ubiquinol oxidase subunit I |
| ? | CP009273 | 446020 = | 73 (0.840) | coding (78/1992 nt) | cyoB | cytochrome o ubiquinol oxidase subunit I | |||||
| * | ? | CP009273 | 714803 = | 88 (0.950) | 5 (0.060) | 5/244 | NT | 6.0% | coding (1114/2199 nt) | speF | ornithine decarboxylase isozyme, inducible |
| ? | CP009273 | 714847 = | 72 (0.810) | coding (1070/2199 nt) | speF | ornithine decarboxylase isozyme, inducible | |||||
| * | ? | CP009273 | = 810879 | 90 (0.970) | 6 (0.070) | 4/242 | NT | 5.7% | coding (1898/2022 nt) | uvrB | excinulease of nucleotide excision repair, DNA damage recognition component |
| ? | CP009273 | = 810911 | 111 (1.260) | coding (1930/2022 nt) | uvrB | excinulease of nucleotide excision repair, DNA damage recognition component | |||||
| * | ? | CP009273 | = 831558 | 45 (0.490) | 4 (0.050) | 4/242 | NT | 7.3% | coding (855/963 nt) | ybiB | putative family 3 glycosyltransferase |
| ? | CP009273 | = 831595 | 58 (0.660) | coding (892/963 nt) | ybiB | putative family 3 glycosyltransferase | |||||
| * | ? | CP009273 | = 1203261 | 54 (0.580) | 19 (0.240) | 18/222 | NT | 25.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 62 (0.770) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1318637 = | 69 (0.750) | 4 (0.040) | 4/246 | NT | 5.4% | coding (283/621 nt) | yciO | putative RNA binding protein |
| ? | CP009273 | 1318678 = | 73 (0.820) | coding (324/621 nt) | yciO | putative RNA binding protein | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 84 (0.920) | 64/250 | NT | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2399636 = | 0 (0.000) | coding (485/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | CP009273 | 2381132 = | 64 (0.690) | 4 (0.050) | 4/238 | NT | 7.1% | intergenic (+216/+57) | yfbM/yfbN | DUF1877 family protein/uncharacterized protein |
| ? | CP009273 | 2381176 = | 45 (0.520) | intergenic (+260/+13) | yfbM/yfbN | DUF1877 family protein/uncharacterized protein | |||||
| * | ? | CP009273 | = 2399639 | 0 (0.000) | 64 (0.690) | 51/254 | NT | 100% | coding (482/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | = 3124699 | NA (NA) | intergenic (+146/+1) | insH1/yghQ | IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase | |||||
| * | ? | CP009273 | 2569729 = | 78 (0.840) | 4 (0.050) | 4/242 | NT | 5.2% | coding (2008/2280 nt) | maeB | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
| ? | CP009273 | 2569766 = | 72 (0.820) | coding (1971/2280 nt) | maeB | malic enzyme: putative oxidoreductase/putative phosphotransacetylase | |||||
| * | ? | CP009273 | = 2723671 | NA (NA) | 4 (0.050) | 3/240 | NT | NA | noncoding (846/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | = 2723705 | NA (NA) | noncoding (812/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 2724716 = | 73 (0.790) | 4 (0.050) +TGAGA |
4/244 | NT | 9.1% | intergenic (‑200/+243) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| ? | CP009273 | = 4156349 | 10 (0.110) | intergenic (+136/‑238) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | 2790404 = | 77 (0.830) | 7 (0.080) | 3/236 | NT | 8.9% | intergenic (‑17/‑166) | yqaE/ygaV | cyaR sRNA‑regulated protein/tributyltin‑inducible repressor of ygaVP |
| ? | CP009273 | 2790456 = | 71 (0.830) | intergenic (‑69/‑114) | yqaE/ygaV | cyaR sRNA‑regulated protein/tributyltin‑inducible repressor of ygaVP | |||||
| * | ? | CP009273 | = 2833344 | 99 (1.070) | 5 (0.060) | 3/242 | NT | 5.3% | coding (462/1458 nt) | ascF | fused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component |
| ? | CP009273 | = 2833404 | 86 (0.980) | coding (522/1458 nt) | ascF | fused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component | |||||
| * | ? | CP009273 | 2893061 = | 76 (0.820) | 4 (0.050) | 4/244 | NT | 5.1% | coding (572/786 nt) | ygcW | putative dehydrogenase |
| ? | CP009273 | 2893145 = | 76 (0.860) | coding (488/786 nt) | ygcW | putative dehydrogenase | |||||
| * | ? | CP009273 | = 3222492 | 67 (0.730) | 4 (0.050) | 3/244 | NT | 5.7% | coding (246/2352 nt) | ygjK | alpha‑glucosidase |
| ? | CP009273 | = 3222518 | 68 (0.770) | coding (272/2352 nt) | ygjK | alpha‑glucosidase | |||||
| * | ? | CP009273 | 3244276 = | 81 (0.880) | 4 (0.040) | 4/248 | NT | 5.1% | coding (356/393 nt) | yqjF | putative quinol oxidase subunit |
| ? | CP009273 | 3244333 = | 70 (0.780) | intergenic (+20/‑50) | yqjF/yqjG | putative quinol oxidase subunit/putative S‑transferase | |||||
| * | ? | CP009273 | 3302159 = | 57 (0.620) | 3 (0.030) | 3/238 | NT | 5.0% | coding (125/885 nt) | nlpI | lipoprotein involved in osmotic sensitivity and filamentation |
| ? | CP009273 | 3302221 = | 60 (0.690) | coding (63/885 nt) | nlpI | lipoprotein involved in osmotic sensitivity and filamentation | |||||
| * | ? | CP009273 | = 3422629 | 74 (0.800) | 4 (0.040) | 4/254 | NT | 5.0% | coding (35/555 nt) | yrdA | bacterial transferase hexapeptide domain protein |
| ? | CP009273 | = 3422707 | 77 (0.830) | coding (113/555 nt) | yrdA | bacterial transferase hexapeptide domain protein | |||||
| * | ? | CP009273 | 3428017 = | 83 (0.900) | 4 (0.050) | 3/240 | NT | 5.4% | coding (445/948 nt) | fmt | 10‑formyltetrahydrofolate:L‑methionyl‑tRNA(fMet) N‑formyltransferase |
| ? | CP009273 | 3428119 = | 62 (0.710) | coding (547/948 nt) | fmt | 10‑formyltetrahydrofolate:L‑methionyl‑tRNA(fMet) N‑formyltransferase | |||||
| * | ? | CP009273 | 3614272 = | NA (NA) | 3 (0.030) | 3/240 | NT | 13.1% | coding (1721/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614326 = | 21 (0.230) | coding (1775/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3627638 | 69 (0.750) | 7 (0.080) | 6/238 | NT | 9.2% | pseudogene (181/1194 nt) | yhiL | pseudogene, DUF4049 family protein |
| ? | CP009273 | = 3627659 | 74 (0.860) | pseudogene (160/1194 nt) | yhiL | pseudogene, DUF4049 family protein | |||||
| * | ? | CP009273 | = 3734353 | 92 (1.000) | 6 (0.070) | 6/238 | NT | 6.5% | noncoding (30/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3734386 | NA (NA) | noncoding (63/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 3923844 = | 105 (1.140) | 6 (0.070) | 4/250 | NT | 5.6% | coding (610/1497 nt) | ravA | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
| ? | CP009273 | 3923878 = | 98 (1.080) | coding (576/1497 nt) | ravA | hexameric AAA+ MoxR family ATPase, putative molecular chaperone | |||||
| * | ? | CP009273 | = 3937014 | NA (NA) | 3 (0.030) | 3/240 | NT | 6.9% | intergenic (+144/‑50) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4030791 | 43 (0.470) | intergenic (+96/‑88) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 4161731 | 70 (0.760) | 13 (0.140) | 5/250 | NT | 14.1% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | = 4203090 | 90 (0.990) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | CP009273 | 4398991 = | NA (NA) | 5 (0.060) | 5/224 | NT | 5.5% | noncoding (22/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4399052 = | 86 (1.060) | noncoding (83/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4446233 = | 70 (0.760) | 4 (0.050) | 4/242 | NT | 5.7% | coding (632/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | CP009273 | 4446265 = | 65 (0.740) | coding (664/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase | |||||
| * | ? | CP009273 | 4532499 = | 52 (0.560) | 7 (0.080) | 6/236 | NT | 11.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 64 (0.750) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4532507 | 49 (0.530) | 12 (0.140) | 12/236 | NT | 18.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 64 (0.750) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||