breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence	position	mutation	annotation	gene	description
RA	4,176,460	A→G	K395E (AAA→GAA)	rpoC →	RNA polymerase, beta prime subunit

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	4249394	4249997	604	56 [35]	[45] 46	zur	zur

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	129 (1.010)	174 (1.360)	57/270	0.2	57.4%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
*	?	CP009273	1203246 =	18 (0.140)	107 (0.950)	45/238	0.4	89.2%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	1205075 =	10 (0.090)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	CP009273	= 1203261	18 (0.140)	119 (1.060)	46/238	0.3	90.2%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	10 (0.090)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	CP009273	= 2283592	NA (NA)	121 (0.960)	53/266	0.3	96.8%	noncoding (1/1195 nt)	IS5	repeat region
	?	CP009273	2399636 =	4 (0.030)					coding (485/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
*	?	CP009273	= 2399639	5 (0.040)	150 (1.170)	51/270	0.4	96.8%	coding (482/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
	?	CP009273	= 3124699	NA (NA)					intergenic (+146/+1)	insH1/yghQ	IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase