breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence	position	mutation	annotation	gene	description
RA	4,176,460	A→G	K395E (AAA→GAA)	rpoC →	RNA polymerase, beta prime subunit

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	4249408	4250012	605	42 [38]	[36] 40	zur	zur

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	153 (1.350)	177 (1.560)	58/268	0.2	53.6%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
*	?	CP009273	1203246 =	125 (1.100)	29 (0.290)	18/236	2.9	24.3%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	1205075 =	71 (0.710)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	CP009273	= 2283592	NA (NA)	93 (0.830)	45/264	0.5	97.9%	noncoding (1/1195 nt)	IS5	repeat region
	?	CP009273	2399636 =	2 (0.020)					coding (485/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
*	?	CP009273	= 2399639	6 (0.050)	104 (0.910)	48/268	0.4	94.5%	coding (482/939 nt)	lrhA	transcriptional repressor of flagellar, motility and chemotaxis genes
	?	CP009273	= 3124699	NA (NA)					intergenic (+146/+1)	insH1/yghQ	IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase