mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 23,862 | A→G | 5.8% | E491G (GAA→GGA) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 26,170 | A→G | 5.4% | E115E (GAA→GAG) | fkpB → | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 32,527 | C→A | 5.4% | R571S (CGT→AGT) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 63,883 | C→A | 9.5% | G633V (GGG→GTG) | polB ← | DNA polymerase II |
| RA | 67,322 | Δ1 bp | 13.0% | coding (449/879 nt) | araC → | ara regulon transcriptional activator; autorepressor |
| RA | 83,517 | C→A | 5.6% | P467P (CCC→CCA) | ilvI → | acetolactate synthase 3 large subunit |
| RA | 94,585 | G→T | 6.2% | G338C (GGC→TGC) | murD → | UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase |
| RA | 106,570 | G→T | 8.1% | R602L (CGA→CTA) | secA → | preprotein translocase subunit, ATPase |
| RA | 123,831 | C→A | 5.6% | I550I (ATC→ATA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 142,065 | C→A | 8.1% | P166P (CCC→CCA) | yadE → | putative polysaccharide deacetylase lipoprotein |
| RA | 155,493 | G→T | 5.0% | R41S (CGC→AGC) | pcnB ← | poly(A) polymerase |
| RA | 175,400 | C→T | 6.9% | A81T (GCA→ACA) | mtn ← | 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase |
| RA | 179,875 | G→T | 6.9% | R309L (CGA→CTA) | cdaR → | carbohydrate diacid regulon transcriptional regulator; autoregulator |
| RA | 200,643 | C→T | 5.7% | A270V (GCG→GTG) | lpxB → | tetraacyldisaccharide‑1‑P synthase |
| RA | 231,361 | C→A | 8.7% | P20H (CCC→CAC) | yafS → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 244,120 | C→A | 8.3% | intergenic (+172/‑4) | yafL → / → rayT | putative lipoprotein and C40 family peptidase/RAYT REP element‑mobilizing transposase; TnpA(REP) |
| RA | 249,874 | G→C | 7.6% | intergenic (+226/‑92) | yafP → / → ykfJ | putative acyl‑CoA transferase/pseudogene |
| RA | 249,908 | A→G | 6.1% | intergenic (+260/‑58) | yafP → / → ykfJ | putative acyl‑CoA transferase/pseudogene |
| RA | 259,285 | C→T | 14.7% | Q32Q (CAG→CAA) | ykfI ← | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 259,297 | A→G | 7.4% | R28R (CGT→CGC) | ykfI ← | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 259,308 | A→G | 8.3% | L25L (TTA→CTA) | ykfI ← | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 259,327 | G→T | 10.3% | P18P (CCC→CCA) | ykfI ← | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 259,330 | T→C | 8.0% | S17S (TCA→TCG) | ykfI ← | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 262,273 | T→C | 6.9% | pseudogene (213/222 nt) | ykfL ← | pseudogene, CP4‑6 putative prophage remnant;Phage or Prophage Related |
| RA | 308,052 | C→A | 5.8% | intergenic (+2/+33) | ykgL → / ← ykgO | uncharacterized protein/RpmJ‑like protein |
| RA | 325,810 | G→T | 5.6% | G213C (GGT→TGT) | betT → | choline transporter of high affinity |
| RA | 347,174 | C→T | 7.0% | L83L (CTC→CTT) | prpD → | 2‑methylcitrate dehydratase |
| RA | 350,016 | G→T | 5.1% | G534W (GGG→TGG) | prpE → | propionate‑‑CoA ligase |
| RA | 361,039 | C→A | 5.5% | E235D (GAG→GAT) | lacI ← | DNA‑binding transcriptional repressor |
| RA | 365,277 | C→A | 6.7% | V256V (GTC→GTA) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 370,576 | Δ1 bp | 7.8% | intergenic (+239/‑339) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,577 | T→G | 7.8% | intergenic (+240/‑338) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 386,177 | G→T | 5.7% | pseudogene (471/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| RA | 399,289 | C→A | 8.2% | P44H (CCC→CAC) | yaiC → | diguanylate cyclase, cellulose regualtor |
| RA | 420,928 | C→A | 6.5% | D154E (GAC→GAA) | queA → | S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase |
| RA | 427,467 | C→A | 5.4% | M1M (ATG→ATT) † | tsx ← | nucleoside channel, receptor of phage T6 and colicin K |
| RA | 455,940 | C→A | 5.9% | R533S (CGT→AGT) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 467,510 | G→T | 6.0% | Q473H (CAG→CAT) | mdlB → | putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
| RA | 470,019 | C→A | 5.6% | G200V (GGT→GTT) | tesB ← | acyl‑CoA thioesterase 2 |
| RA | 489,425 | C→A | 5.4% | T626T (ACC→ACA) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| RA | 506,251 | C→A | 10.9% | V195V (GTG→GTT) | copA ← | copper transporter |
| RA | 510,881 | G→T | 5.5% | R117S (CGT→AGT) | qmcA ← | PHB domain membrane‑anchored putative protease |
| RA | 513,661 | C→A | 5.4% | P25P (CCG→CCT) | ybbN ← | DnaK co‑chaperone, thioredoxin‑like protein |
| RA | 588,169 | G→T | 11.3% | R156S (CGT→AGT) | nfrB ← | bacteriophage N4 receptor, inner membrane subunit |
| RA | 588,178 | G→T | 12.2% | Q153K (CAA→AAA) | nfrB ← | bacteriophage N4 receptor, inner membrane subunit |
| RA | 590,387 | G→T | 5.6% | P171P (CCC→CCA) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 620,130 | G→T | 6.8% | intergenic (‑164/‑211) | fepB ← / → entC | iron‑enterobactin transporter subunit/isochorismate synthase 1 |
| RA | 691,014 | G→T | 5.6% | G153V (GGT→GTT) | ubiF → | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase |
| RA | 725,098 | C→T | 9.1% | V20V (GTC→GTT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 726,110 | T→C | 5.4% | C358R (TGT→CGT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,989 | C→A | 7.3% | A984E (GCA→GAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 732,499 | T→C | 5.8% | pseudogene (219/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 733,384 | C→G | 10.5% | pseudogene (1104/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 734,129 | T→G | 10.7% | A194A (GCT→GCG) | ybfD → | H repeat‑associated putative transposase |
| RA | 764,392 | Δ1 bp | 5.6% | coding (959/2634 nt) | mngB → | alpha‑mannosidase |
| RA | 764,393 | Δ1 bp | 5.7% | coding (960/2634 nt) | mngB → | alpha‑mannosidase |
| RA | 764,394 | Δ1 bp | 5.7% | coding (961/2634 nt) | mngB → | alpha‑mannosidase |
| RA | 798,822 | C→T | 5.7% | intergenic (+46/‑137) | ybhI → / → ybhJ | putative transporter/putative hydratase |
| RA | 810,853 | G→T | 5.1% | P624P (CCG→CCT) | uvrB → | excinulease of nucleotide excision repair, DNA damage recognition component |
| RA | 824,018 | G→T | 8.1% | S140S (TCC→TCA) | ybhF ← | putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 834,874 | C→A | 7.2% | W705L (TGG→TTG) | fiu ← | catecholate siderophore receptor Fiu |
| RA | 841,026 | C→A | 6.2% | intergenic (‑90/+171) | ybiO ← / ← glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit |
| RA | 848,166 | G→T | 5.4% | intergenic (‑113/+159) | ybiP ← / ← mntS | putative EptAB family phosphoethanolamine transferase, inner membrane protein/Mn(2)‑response protein, MntR‑repressed |
| RA | 852,531 | G→A | 5.5% | P371P (CCG→CCA) | ybiT → | putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 858,887 | C→A | 5.7% | L27L (CTG→CTT) | ybiY ← | putative pyruvate formate lyase activating enzyme |
| RA | 875,817 | G→A | 7.5% | H40H (CAC→CAT) | gstB ← | glutathione S‑transferase |
| RA | 885,245 | C→A | 6.6% | G11W (GGG→TGG) | ybjL ← | putative transporter |
| RA | 910,627 | G→T | 8.1% | intergenic (‑314/+181) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 916,004 | G→A | 9.5% | A68T (GCC→ACC) | macB → | fused macrolide transporter subunits of ABC superfamily: ATP‑binding component/membrane component |
| RA | 949,496 | C→A | 5.8% | G143C (GGT→TGT) | focA ← | formate channel |
| RA | 960,509 | G→A | 5.6% | S245N (AGT→AAT) | ycaI → | ComEC family inner membrane protein |
| RA | 968,574 | C→A | 6.6% | W95L (TGG→TTG) | ycbC ← | DUF218 superfamily protein |
| RA | 975,847 | G→T | 7.0% | G1356C (GGC→TGC) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 988,849 | C→A | 5.9% | D218Y (GAT→TAT) | ssuB ← | alkanesulfonate transporter subunit |
| RA | 1,008,569 | G→T | 5.7% | M371I (ATG→ATT) | pqiA → | paraquat‑inducible, SoxRS‑regulated inner membrane protein |
| RA | 1,010,688 | C→A | 5.8% | Q113K (CAG→AAG) | pqiC → | DUF330 family putative lipoprotein |
| RA | 1,028,544 | A→G | 5.0% | Q317R (CAA→CGA) | hyaA → | hydrogenase 1, small subunit |
| RA | 1,033,841 | G→A | 5.2% | A216T (GCA→ACA) | cbdA → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,048,607 | C→T | 6.3% | G71D (GGT→GAT) | yccM ← | putative 4Fe‑4S membrane protein |
| RA | 1,073,709 | G→A | 5.7% | T210T (ACC→ACT) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,731 | C→A | 6.0% | P324Q (CCG→CAG) | putP → | proline:sodium symporter |
| RA | 1,088,534 | A→G | 9.8% | D68G (GAC→GGC) | ycdT → | diguanylate cyclase, membrane‑anchored |
| RA | 1,116,849 | G→A | 11.3% | A32V (GCG→GTG) | dinI ← | DNA damage‑inducible protein I |
| RA | 1,119,630 | C→A | 7.1% | G385C (GGT→TGT) | mdtH ← | multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin |
| RA | 1,138,925 | G→T | 8.9% | T300K (ACG→AAG) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
| RA | 1,158,212 | C→T | 10.5% | A40V (GCC→GTC) | lpoB → | OM lipoprotein stimulator of MrcB transpeptidase |
| RA | 1,168,052 | G→T | 9.5% | R457S (CGT→AGT) | mfd ← | transcription‑repair coupling factor |
| RA | 1,174,250 | C→A | 7.9% | P68T (CCG→ACG) | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,191,515 | C→T | 6.7% | L313L (CTG→TTG) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,676 | C→T | 13.8% | H366H (CAC→CAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,688 | C→T | 16.3% | T370T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,701 | T→C | 19.6% | L375L (TTA→CTA) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,191,703 | A→G | 20.0% | L375L (TTA→TTG) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,203,094 | A→G | 7.0% | E46E (GAA→GAG) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,203,106 | G→T | 7.1% | V50V (GTG→GTT) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,203,115 | A→C | 7.4% | A53A (GCA→GCC) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,218,996 | G→A | 5.5% | intergenic (+91/‑24) | ymgJ → / → ycgI | uncharacterized protein/pseudogene |
| RA | 1,219,001 | T→A | 5.3% | intergenic (+96/‑19) | ymgJ → / → ycgI | uncharacterized protein/pseudogene |
| RA | 1,229,627 | G→T | 7.1% | H183N (CAT→AAT) | nhaB ← | sodium:proton antiporter |
| RA | 1,248,529 | T→C | 5.5% | intergenic (+88/+12) | dhaR → / ← ycgV | dhaKLM operon transcription activator/putative adhesin |
| RA | 1,251,837 | C→A | 5.7% | intergenic (‑429/+340) | ycgV ← / ← ychF | putative adhesin/catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
| RA | 1,276,769 | C→A | 5.9% | L484M (CTG→ATG) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,280,864 | G→A | 6.8% | A90A (GCG→GCA) | narJ → | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| RA | 1,282,249 | A→G | 7.2% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,608 | T→C | 5.6% | noncoding (85/171 nt) T9A (ACT→GCT) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,282,617 | G→A | 5.8% | noncoding (76/171 nt) Q6* (CAA→TAA) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,320,560 | G→T | 5.8% | G520* (GGA→TGA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,354,574 | G→T | 5.1% | L198I (CTC→ATC) | puuA ← | glutamate‑‑putrescine ligase |
| RA | 1,355,978 | C→T | 5.5% | P201L (CCG→CTG) | puuD → | gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| RA | 1,373,349 | G→T | 7.4% | L403L (CTG→CTT) | ycjT → | putative family 65 glycosyl hydrolase |
| RA | 1,417,757 | C→G | 7.3% | pseudogene (300/444 nt) P34R (CCG→CGG) |
rzpR → rzoR → |
pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS Rac prophage; putative lipoprotein |
| RA | 1,422,040 | A→G | 7.6% | pseudogene (944/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,060 | G→C | 10.0% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,098 | G→A | 6.9% | pseudogene (886/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,648 | G→C | 5.1% | pseudogene (336/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,433,509 | C→A | 8.0% | L511L (CTG→CTT) | pfo ← | pyruvate‑flavodoxin oxidoreductase |
| RA | 1,460,593 | C→G | 6.8% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,602 | T→C | 8.2% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,861 | G→A | 6.3% | pseudogene (1213/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,115 | T→C | 6.5% | pseudogene (1467/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,490,297 | G→T | 7.0% | E251D (GAG→GAT) | ydcJ → | putative metalloenzyme |
| RA | 1,504,636 | C→A | 10.8% | S126* (TCG→TAG) | ydcR → | putative DNA‑binding transcriptional regulator/putative amino transferase |
| RA | 1,507,117 | G→A | 5.6% | G15D (GGT→GAT) | ydcT → | putative spermidine/putrescine transporter subunit |
| RA | 1,513,512 | G→T | 5.6% | G77C (GGT→TGT) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
| RA | 1,522,371 | C→G | 6.6% | pseudogene (213/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,522,374 | C→T | 6.3% | pseudogene (216/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,535,991 | G→T | 6.6% | S286Y (TCT→TAT) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,540,567 | C→A | 7.8% | W287L (TGG→TTG) | yddG ← | aromatic amino acid exporter |
| RA | 1,542,129 | T→C | 5.9% | W158R (TGG→CGG) | fdnG → | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| RA | 1,544,694 | G→T | 8.2% | E1013* (GAG→TAG) | fdnG → | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| RA | 1,549,683 | C→A | 7.5% | D82Y (GAC→TAC) | maeA ← | malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
| RA | 1,590,939 | C→T | 5.9% | pseudogene (1306/5323 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,596,481 | C→A | 8.1% | L245L (CTC→CTA) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,602,937 | G→T | 5.3% | R115R (CGG→AGG) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,610,786 | C→A | 8.5% | S256Y (TCT→TAT) | yneK → | uncharacterized protein |
| RA | 1,622,932 | C→T | 5.4% | S108S (AGC→AGT) | rspR → | transcriptional repressor for rspAB |
| RA | 1,640,496 | G→A | 5.1% | intergenic (+37/‑166) | ydfV → / → flxA | Qin prophage; uncharacterized protein/Qin prophage; uncharacterized protein |
| RA | 1,672,897 | G→T | 6.1% | D72Y (GAC→TAC) | ydgH → | DUF1471 family periplasmic protein |
| RA | 1,681,969 | C→A | 10.1% | A222A (GCG→GCT) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,696,865 | G→T | 5.4% | G126C (GGT→TGT) | add → | adenosine deaminase |
| RA | 1,725,812 | C→A | 8.9% | V823V (GTC→GTA) | lhr → | putative ATP‑dependent helicase |
| RA | 1,728,939 | C→A | 8.7% | T83N (ACC→AAC) | mepH → | murein DD‑endopeptidase, space‑maker hydrolase |
| RA | 1,747,001 | C→A | 7.7% | G363C (GGT→TGT) | ydhV ← | putative oxidoreductase subunit |
| RA | 1,772,467 | G→T | 7.2% | G339C (GGT→TGT) | ydiO → | putative acyl‑CoA dehydrogenase |
| RA | 1,777,399 | C→G | 5.1% | P38A (CCA→GCA) | fadK → | short chain acyl‑CoA synthetase, anaerobic |
| RA | 1,800,696 | C→A | 10.1% | P24T (CCC→ACC) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,830,102 | G→T | 7.4% | D111Y (GAT→TAT) | ynjA → | carboxymuconolactone decarboxylase family protein |
| RA | 1,835,581 | G→T | 5.3% | T27K (ACG→AAG) | ynjF ← | inner membrane protein, phosphatidylglycerophosphate synthase homolog |
| RA | 1,850,963 | C→A | 5.1% | D75Y (GAC→TAC) | ydjH ← | putative kinase |
| RA | 1,851,127 | G→A | 5.6% | P20L (CCG→CTG) | ydjH ← | putative kinase |
| RA | 1,857,826 | G→T | 7.4% | E267* (GAA→TAA) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase A |
| RA | 1,859,965 | C→T | 5.1% | intergenic (‑72/+18) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,869,655 | C→A | 6.1% | W60L (TGG→TTG) | yeaM ← | putative DNA‑binding transcriptional regulator |
| RA | 1,879,291 | C→A | 7.3% | H124N (CAT→AAT) | yeaW → | putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster |
| RA | 1,907,660 | C→A | 5.2% | E472* (GAA→TAA) | prc ← | carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,927,210 | C→T | 9.9% | G551D (GGC→GAC) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,965,139 | C→A | 5.2% | D35Y (GAC→TAC) | tap ← | methyl‑accepting protein IV |
| RA | 1,966,681 | G→T | 9.5% | L90I (CTC→ATC) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 2,000,549 | G→T | 5.2% | D305Y (GAC→TAC) | amyA → | cytoplasmic alpha‑amylase |
| RA | 2,009,290 | G→T | 7.0% | L310L (CTG→CTT) | fliG → | flagellar motor switching and energizing component |
| RA | 2,009,297 | C→T | 6.7% | R313C (CGC→TGC) | fliG → | flagellar motor switching and energizing component |
| RA | 2,009,318 | G→T | 6.8% | E320* (GAG→TAG) | fliG → | flagellar motor switching and energizing component |
| RA | 2,011,651 | G→A | 8.7% | T75T (ACG→ACA) | fliJ → | flagellar protein |
| RA | 2,015,748 | G→A | 7.8% | P133P (CCG→CCA) | fliP → | flagellar biosynthesis protein |
| RA | 2,020,553 | G→T | 5.3% | H316N (CAT→AAT) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
| RA | 2,029,991 | C→A | 8.9% | H226N (CAT→AAT) | hchA → | glyoxalase III and Hsp31 molecular chaperone |
| RA | 2,044,595 | C→A | 5.3% | T2059T (ACC→ACA) | yeeJ → | putative adhesin |
| RA | 2,052,649 | C→A | 5.9% | A175S (GCC→TCC) | yeeO ← | putative multdrug exporter, MATE family |
| RA | 2,059,656 | T→C | 7.5% | intergenic (‑21/+130) | yeeH ← / ← insH1 | pseudogene/IS5 transposase and trans‑activator |
| RA | 2,084,023 | C→T | 5.5% | D117D (GAC→GAT) | hisG → | ATP phosphoribosyltransferase |
| RA | 2,088,687 | G→T | 12.3% | G28C (GGT→TGT) | hisA → | N‑(5'‑phospho‑L‑ribosyl‑formimino)‑5‑amino‑1‑ (5'‑phosphoribosyl)‑4‑imidazolecarboxamide isomerase |
| RA | 2,096,489 | C→A | 10.4% | pseudogene (382/446 nt) | wbbL ← | lipopolysaccharide biosynthesis protein, N‑ter fragment (pseudogene) |
| RA | 2,126,291 | C→A | 10.3% | W196C (TGG→TGT) | wcaA ← | putative glycosyl transferase |
| RA | 2,130,404 | G→T | 8.5% | A107A (GCC→GCA) | wza ← | colanic acid export protein; outer membrane auxillary lipoprotein |
| RA | 2,141,418 | C→A | 6.2% | F88L (TTC→TTA) | yegD → | Hsp70 chaperone family protein |
| RA | 2,180,522 | G→T | 5.7% | S28S (TCG→TCT) | rcnB → | periplasmic modulator of Ni and Co efflux |
| RA | 2,184,571 | C→A | 7.0% | W185L (TGG→TTG) | yehC ← | putative periplasmic pilin chaperone |
| RA | 2,187,494 | C→A | 5.5% | E52* (GAA→TAA) | mrp ← | antiporter inner membrane protein |
| RA | 2,201,622 | C→T | 5.4% | S59S (TCC→TCT) | yehP → | VMA domain putative YehL ATPase stimulator |
| RA | 2,202,378 | G→T | 5.2% | G311G (GGG→GGT) | yehP → | VMA domain putative YehL ATPase stimulator |
| RA | 2,213,483 | G→T | 10.7% | T662T (ACC→ACA) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,298,241 | T→C | 7.5% | intergenic (+369/+346) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,303,212 | C→A | 6.9% | E225* (GAG→TAG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| RA | 2,304,546 | G→T | 7.9% | T156T (ACC→ACA) | apbE ← | putative thiamine‑synthetic flavin transferase lipoprotein |
| RA | 2,322,184 | G→A | 7.7% | L365L (CTG→TTG) | yfaQ ← | tandem DUF2300 domain protein, putative host defense protein |
| RA | 2,356,129 | C→A | 6.0% | S328S (TCG→TCT) | yfaY ← | inactive PncC family protein |
| RA | 2,361,572 | C→A | 7.8% | L19M (CTG→ATG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,365,856 | G→T | 6.8% | A490A (GCG→GCT) | arnT → | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
| RA | 2,374,193 | G→T | 8.6% | intergenic (‑71/+8) | menF ← / ← elaB | isochorismate synthase 2/DUF883 family protein, putative membrane‑anchored ribosome‑binding protein |
| RA | 2,420,172 | G→A | 9.1% | T32T (ACC→ACT) | hisJ ← | histidine/lysine/arginine/ornithine transporter subunit |
| RA | 2,423,159 | C→A | 5.6% | G187W (GGG→TGG) | purF ← | amidophosphoribosyltransferase |
| RA | 2,424,627 | C→A | 6.3% | V179V (GTG→GTT) | dedD ← | membrane‑anchored periplasmic protein involved in septation |
| RA | 2,435,845 | G→T | 7.4% | A201A (GCG→GCT) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,453,984 | G→T | 7.3% | intergenic (‑36/+145) | fadI ← / ← yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| RA | 2,460,011 | C→A | 5.1% | intergenic (+149/‑13) | argW → / → intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
| RA | 2,477,352 | G→T | 14.6% | R40L (CGG→CTG) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,493,712 | G→T | 6.5% | L521L (CTG→CTT) | ypdA → | sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system |
| RA | 2,495,092 | C→A | 6.8% | H162N (CAT→AAT) | ypdC → | putative DNA‑binding protein |
| RA | 2,497,819 | G→T | 5.3% | S49* (TCG→TAG) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
| RA | 2,498,863 | G→T | 7.4% | P55Q (CCG→CAG) | ypdE ← | aminopeptidase |
| RA | 2,524,415 | C→A | 9.5% | D60Y (GAT→TAT) | zipA ← | FtsZ stabilizer |
| RA | 2,551,481 | G→A | 6.8% | G186G (GGC→GGT) | eutB ← | ethanolamine ammonia‑lyase, large subunit, heavy chain |
| RA | 2,551,577 | C→A | 8.1% | P154P (CCG→CCT) | eutB ← | ethanolamine ammonia‑lyase, large subunit, heavy chain |
| RA | 2,584,209 | A→G | 6.0% | L6P (CTG→CCG) | ypfM ← | stress‑induced small enterobacterial protein |
| RA | 2,584,656 | C→T | 6.0% | R17R (CGC→CGT) | yffB → | putative ArsC family reductase |
| RA | 2,595,109 | C→T | 9.5% | R184C (CGC→TGC) | hyfA → | hydrogenase 4, 4Fe‑4S subunit |
| RA | 2,601,373 | C→A | 5.7% | G366G (GGC→GGA) | hyfF → | hydrogenase 4, membrane subunit |
| RA | 2,601,803 | G→T | 6.7% | D510Y (GAT→TAT) | hyfF → | hydrogenase 4, membrane subunit |
| RA | 2,637,963 | G→T | 8.8% | R87R (CGC→CGA) | ndk ← | multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase |
| RA | 2,674,802 | G→T | 11.7% | Q435K (CAG→AAG) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,680,471 | G→T | 12.7% | V99V (GTC→GTA) | glnB ← | regulatory protein P‑II for glutamine synthetase |
| RA | 2,696,347 | G→T | 6.1% | A133A (GCC→GCA) | era ← | membrane‑associated, 16S rRNA‑binding GTPase |
| RA | 2,703,083 | C→A | 14.9% | D97Y (GAT→TAT) | rpoE ← | RNA polymerase sigma E factor |
| RA | 2,736,636:1 | +G | 5.1% | coding (895/1227 nt) | yfiN → | putative membrane‑anchored diguanylate cyclase with an N‑terminal periplasmic domain |
| RA | 2,760,589 | G→T | 5.0% | E83* (GAG→TAG) | rnlB → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,763,311 | C→A | 6.6% | H84N (CAC→AAC) | yfjR → | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| RA | 2,771,561 | T→C | 7.7% | S1509G (AGT→GGT) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,792,355 | G→T | 5.3% | intergenic (‑501/‑168) | stpA ← / → alaE | DNA binding protein, nucleoid‑associated/alanine exporter, alanine‑inducible, stress‑responsive |
| RA | 2,799,930 | C→T | 5.6% | Q188* (CAG→TAG) | proW → | glycine betaine transporter subunit |
| RA | 2,802,453 | G→T | 6.3% | pseudogene (779/1178 nt) | ygaY → | pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein |
| RA | 2,803,408 | G→T | 6.2% | A145S (GCC→TCC) | ygaZ → | putative L‑valine exporter, norvaline resistance protein |
| RA | 2,806,232 | C→T | 5.2% | T86T (ACC→ACT) | emrB → | multidrug efflux system protein |
| RA | 2,827,230 | C→A | 7.3% | L466I (CTC→ATC) | norV → | anaerobic nitric oxide reductase flavorubredoxin |
| RA | 2,835,817 | T→C | 8.0% | intergenic (+44/+115) | ascB → / ← hycI | cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE |
| RA | 2,835,818 | G→T | 10.0% | intergenic (+45/+114) | ascB → / ← hycI | cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE |
| RA | 2,835,823 | A→C | 7.3% | intergenic (+50/+109) | ascB → / ← hycI | cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE |
| RA | 2,848,326 | C→A | 5.7% | V210V (GTC→GTA) | fhlA → | formate hydrogenlyase transcriptional activator |
| RA | 2,871,830 | G→T | 7.8% | intergenic (+853/+98) | iap → / ← ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| RA | 2,887,138 | C→A | 5.1% | P375T (CCT→ACT) | ygcN → | putative oxidoreductase |
| RA | 2,913,960:1 | +A | 6.7% | coding (146/1341 nt) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,913,960:2 | +A | 6.7% | coding (146/1341 nt) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,913,960:3 | +C | 6.7% | coding (146/1341 nt) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,913,961 | T→A | 6.3% | T49S (ACC→TCC) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,913,963:1 | +C | 6.6% | coding (143/1341 nt) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,916,829 | C→A | 9.3% | V105V (GTG→GTT) | truC ← | tRNA(Ile1,Asp) pseudouridine(65) synthase |
| RA | 2,937,181 | G→T | 6.6% | R162R (CGG→CGT) | csdA → | cysteine sulfinate desulfinase |
| RA | 2,957,587 | Δ1 bp | 9.1% | intergenic (‑51/+133) | ppdA ← / ← thyA | putative prepilin peptidase‑dependent protein/thymidylate synthetase |
| RA | 2,961,368 | G→T | 5.3% | F142L (TTC→TTA) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| RA | 2,961,840 | T→C | 5.1% | Q166R (CAA→CGA) | rppH ← | RNA pyrophosphohydrolase |
| RA | 2,974,095 | G→A | 6.6% | intergenic (‑101/+28) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,992,197 | C→A | 9.9% | intergenic (‑10/+146) | ygeQ ← / ← glyU | pseudogene/tRNA‑Gly |
| RA | 3,062,907 | C→A | 5.4% | G87V (GGA→GTA) | mscS ← | mechanosensitive channel protein, small conductance |
| RA | 3,085,399 | C→A | 5.9% | R55S (CGC→AGC) | gshB → | glutathione synthetase |
| RA | 3,091,261 | G→A | 6.7% | P212P (CCG→CCA) | yggW → | HemN family putative oxidoreductase |
| RA | 3,097,570 | C→T | 6.8% | A40V (GCG→GTG) | yggX → | protein that protects iron‑sulfur proteins against oxidative damage |
| RA | 3,122,341 | G→T | 7.3% | L237L (CTG→CTT) | glcC → | glycolate‑inducible glc operon transcriptional repressor; autorepressor |
| RA | 3,142,041 | C→A | 5.2% | A262A (GCC→GCA) | gpr → | L‑glyceraldehyde 3‑phosphate reductase |
| RA | 3,149,253 | C→A | 6.7% | T180T (ACC→ACA) | yqhD → | aldehyde reductase, NADPH‑dependent |
| RA | 3,154,951 | C→A | 5.3% | D360Y (GAT→TAT) | ftsP ← | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
| RA | 3,155,815 | C→A | 6.4% | G72C (GGT→TGT) | ftsP ← | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
| RA | 3,164,849 | G→T | 5.3% | R336L (CGA→CTA) | qseC → | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
| RA | 3,197,446 | C→A | 7.7% | V15V (GTG→GTT) | bacA ← | undecaprenyl pyrophosphate phosphatase |
| RA | 3,201,047 | G→A | 5.5% | G106G (GGG→GGA) | ttdB → | L‑tartrate dehydratase, beta subunit |
| RA | 3,201,237 | C→A | 6.0% | H170N (CAC→AAC) | ttdB → | L‑tartrate dehydratase, beta subunit |
| RA | 3,201,275 | C→A | 5.6% | F182L (TTC→TTA) | ttdB → | L‑tartrate dehydratase, beta subunit |
| RA | 3,228,115 | G→A | 5.5% | L374L (CTG→TTG) | rlmG ← | 23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,249,125 | C→A | 5.5% | E296* (GAA→TAA) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,287,536 | G→A | 6.1% | A260T (GCC→ACC) | lpoA → | OM lipoprotein stimulator of MrcA transpeptidase |
| RA | 3,311,369 | C→A | 6.9% | intergenic (‑4/+203) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,320,954 | G→T | 6.5% | Q24K (CAA→AAA) | rlmE ← | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 3,338,014 | G→T | 6.5% | D238Y (GAC→TAC) | lptB → | lipopolysaccharide export ABC transporter ATP‑binding protein of the LptBFGC export complex |
| RA | 3,339,583 | G→T | 9.8% | E18* (GAA→TAA) | hpf → | ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S) |
| RA | 3,342,594 | G→T | 10.7% | S192* (TCG→TAG) | mtgA ← | biosynthetic peptidoglycan transglycosylase |
| RA | 3,370,972 | G→A | 11.8% | intergenic (‑193/+202) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,416,715 | T→C | 7.8% | intergenic (+162/+67) | yhdZ → / ← rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| RA | 3,416,890 | T→G | 16.4% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,416,899 | A→G | 14.7% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,433,196 | C→A | 7.3% | A55S (GCC→TCC) | rplQ ← | 50S ribosomal subunit protein L17 |
| RA | 3,457,385 | G→T | 11.0% | T35T (ACG→ACT) | gspL → | general secretory pathway component, cryptic |
| RA | 3,458,929 | C→A | 5.8% | L10M (CTG→ATG) | gspO → | bifunctional prepilin leader peptidase/ methylase |
| RA | 3,488,998 | G→T | 10.3% | P543P (CCG→CCT) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,500,092 | G→T | 5.6% | L202M (CTG→ATG) | yhfT ← | inner membrane protein |
| RA | 3,522,600 | C→A | 9.1% | L191L (CTC→CTA) | yrfG → | GMP/IMP nucleotidase |
| RA | 3,537,388 | C→T | 7.6% | A288V (GCT→GTT) | yhgA → | transposase_31 family protein |
| RA | 3,546,818 | G→T | 6.6% | L125L (CTG→CTT) | malT → | mal regulon transcriptional activator |
| RA | 3,567,897 | G→T | 5.5% | V114V (GTC→GTA) | asd ← | aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
| RA | 3,571,547 | A→G | 5.3% | H180H (CAT→CAC) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,573,153 | G→T | 6.9% | P338H (CCC→CAC) | yhhX ← | putative oxidoreductase |
| RA | 3,584,930 | C→A | 8.5% | K252N (AAG→AAT) | ugpB ← | glycerol‑3‑phosphate transporter subunit |
| RA | 3,623,248 | C→A | 5.7% | V239L (GTG→TTG) | yhiI ← | putative membrane fusion protein (MFP) of efflux pump |
| RA | 3,662,186 | C→A | 6.9% | Q121H (CAG→CAT) | yhjA ← | putative cytochrome C peroxidase |
| RA | 3,697,447 | G→T | 8.6% | L225L (CTC→CTA) | dppC ← | dipeptide/heme transporter |
| RA | 3,708,478 | C→A | 8.3% | W426L (TGG→TTG) | bisC ← | biotin sulfoxide reductase |
| RA | 3,727,865 | G→T | 7.0% | T262T (ACG→ACT) | xylH → | D‑xylose ABC transporter permease subunit |
| RA | 3,727,876 | G→T | 8.1% | R266L (CGA→CTA) | xylH → | D‑xylose ABC transporter permease subunit |
| RA | 3,731,145 | C→A | 6.3% | R97S (CGC→AGC) | malS → | alpha‑amylase |
| RA | 3,758,716 | A→G | 5.1% | R1058R (AGA→AGG) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| RA | 3,759,554 | G→T | 7.1% | D1338Y (GAC→TAC) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| RA | 3,771,895 | T→C | 5.7% | A379A (GCT→GCC) | lldP → | L‑lactate permease |
| RA | 3,788,072 | C→A | 6.3% | S242S (TCC→TCA) | hldD → | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
| RA | 3,823,447 | C→T | 5.9% | G381G (GGC→GGT) | xanP → | xanthine permease |
| RA | 3,859,423 | C→A | 9.7% | V71F (GTT→TTT) | yidE ← | putative transporter |
| RA | 3,862,211 | G→T | 7.3% | T153T (ACC→ACA) | yidR ← | DUF3748 family protein |
| RA | 3,868,941 | C→A | 5.3% | I48I (ATC→ATA) | yidX → | putative lipoprotein |
| RA | 3,883,654 | G→T | 6.3% | G20V (GGT→GTT) | tnaB → | tryptophan transporter of low affinity |
| RA | 3,904,448 | C→A | 5.0% | P146P (CCG→CCT) | pstS ← | periplasmic phosphate binding protein, high‑affinity |
| RA | 3,917,290 | G→T | 5.8% | T568T (ACC→ACA) | mnmG ← | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,945,169 | C→A | 5.6% | pseudogene (268/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| RA | 3,969,110 | G→T | 5.7% | R202L (CGA→CTA) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,986,382 | C→T | 48.1% | L624F (CTC→TTC) | cyaA → | adenylate cyclase |
| RA | 3,998,650 | C→A | 5.8% | A143A (GCC→GCA) | pldA → | outer membrane phospholipase A |
| RA | 4,023,061:1 | +G | 9.2% | coding (1271/2190 nt) | fadB ← | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 4,029,163 | T→A | 5.7% | noncoding (273/1542 nt) | rrsA → | 16S ribosomal RNA of rrnA operon |
| RA | 4,055,251 | G→T | 5.7% | D243Y (GAT→TAT) | yihM → | putative sugar phosphate isomerase |
| RA | 4,096,516 | C→A | 10.1% | L40L (CTC→CTA) | fieF → | ferrous iron and zinc transporter |
| RA | 4,102,279 | C→T | 6.0% | R13C (CGT→TGT) | yiiR → | DUF805 family putative inner membrane protein |
| RA | 4,122,135 | G→T | 5.7% | G791G (GGG→GGT) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,132,202 | G→T | 7.2% | intergenic (‑53/‑256) | frwA ← / → frwC | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component/putative enzyme IIC component of PTS |
| RA | 4,133,222 | G→T | 5.4% | M255I (ATG→ATT) | frwC → | putative enzyme IIC component of PTS |
| RA | 4,165,449 | C→T | 12.7% | noncoding (50/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,450 | A→C | 12.7% | noncoding (51/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,490 | G→T | 8.0% | intergenic (+6/‑111) | tyrU → / → glyT | tRNA‑Tyr/tRNA‑Gly |
| RA | 4,167,630 | G→T | 5.3% | L115L (CTG→CTT) | secE → | preprotein translocase membrane subunit |
| RA | 4,174,270 | G→T | 21.5% | R1033L (CGC→CTC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,176,026:1 | +T | 9.9% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,026:2 | +C | 9.9% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,026:3 | +C | 9.9% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,026:4 | +G | 9.9% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,026:5 | +C | 9.9% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,026:6 | +T | 9.8% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,026:7 | +G | 9.9% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,026:8 | +G | 9.9% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,026:9 | +T | 9.9% | coding (749/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,109 | C→A | 12.4% | R278S (CGT→AGT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,176,460 | A→G | 54.9% | K395E (AAA→GAA) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,177,142 | A→G | 15.4% | D622G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,501 | G→C | 6.2% | R1075P (CGT→CCT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,184,759 | G→T | 8.4% | A423A (GCC→GCA) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,220,812 | C→A | 8.5% | F177L (TTC→TTA) | rluF → | 23S rRNA pseudouridine(2604) synthase |
| RA | 4,222,027 | G→T | 5.0% | R379R (CGG→AGG) | lysC ← | lysine‑sensitive aspartokinase 3 |
| RA | 4,256,291 | G→T | 9.1% | S194S (TCG→TCT) | alr → | alanine racemase, biosynthetic, PLP‑binding |
| RA | 4,299,367 | G→T | 6.4% | D477E (GAC→GAA) | alsA ← | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 4,307,842 | G→T | 6.4% | S247* (TCA→TAA) | phnK ← | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,311,786 | C→A | 6.7% | D152Y (GAC→TAC) | phnF ← | putative DNA‑binding transcriptional regulator of phosphonate uptake and biodegradation |
| RA | 4,315,658 | C→A | 7.3% | intergenic (‑100/+558) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,938 | C→T | 5.1% | intergenic (‑380/+278) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,939 | A→T | 5.1% | intergenic (‑381/+277) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,333,122 | G→T | 5.7% | intergenic (+39/‑64) | melA → / → melB | alpha‑galactosidase, NAD(P)‑binding/melibiose:sodium symporter |
| RA | 4,345,264 | C→A | 8.3% | G322V (GGG→GTG) | dtpC ← | dipeptide and tripeptide permease |
| RA | 4,371,640 | C→A | 8.6% | G166C (GGT→TGT) | frdA ← | fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit |
| RA | 4,374,953 | C→T | 6.7% | S433L (TCG→TTG) | yjeM → | putative transporter |
| RA | 4,386,893 | C→A | 5.6% | Q338K (CAG→AAG) | amiB → | N‑acetylmuramoyl‑l‑alanine amidase II |
| RA | 4,392,037 | C→T | 7.7% | T61T (ACC→ACT) | hflK → | modulator for HflB protease specific for phage lambda cII repressor |
| RA | 4,402,223 | C→A | 7.7% | S7* (TCA→TAA) | yjfM → | DUF1190 family protein |
| RA | 4,440,812 | Δ1 bp | 8.3% | intergenic (+77/‑63) | ytfQ → / → ytfR | galactofuranose binding proteint: periplasmic‑binding component of ABC superfamily/putative ABC superfamily sugar transporter ATP‑binding subunit |
| RA | 4,467,949 | T→A | 6.3% | R60R (CGA→CGT) | argI ← | ornithine carbamoyltransferase 1 |
| RA | 4,472,193 | C→A | 7.6% | G488C (GGC→TGC) | valS ← | valyl‑tRNA synthetase |
| RA | 4,491,205 | C→G | 5.7% | S43S (TCC→TCG) | yjgZ → | uncharacterized protein |
| RA | 4,503,586 | G→T | 5.2% | G180G (GGC→GGA) | fecB ← | iron‑dicitrate transporter subunit |
| RA | 4,508,885 | T→A | 5.0% | pseudogene (348/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,897 | T→A | 5.1% | pseudogene (360/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,538,051 | A→C | 5.1% | I165L (ATC→CTC) ‡ | fimF → | minor component of type 1 fimbriae |
| RA | 4,538,052 | T→A | 5.1% | I165N (ATC→AAC) ‡ | fimF → | minor component of type 1 fimbriae |
| RA | 4,538,053 | C→G | 5.1% | I165M (ATC→ATG) ‡ | fimF → | minor component of type 1 fimbriae |
| RA | 4,575,724 | C→A | 7.0% | pseudogene (909/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,582,709 | G→A | 6.1% | Q412Q (CAG→CAA) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,596,056 | A→G | 7.0% | noncoding (48/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,608,267 | C→A | 5.5% | S74R (AGC→AGA) | deoA → | thymidine phosphorylase |
| RA | 4,619,383 | C→A | 5.9% | L319L (CTG→CTT) | yjjK ← | putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 4,625,955 | C→A | 6.4% | R44R (CGC→CGA) | creB → | response regulator in two‑component regulatory system with CreC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 3745266 | 3745377 | 112 | 16 [13] | [13] 20 | [yiaU] | [yiaU] |
| * | * | ÷ | CP009273 | 4249411 | 4249981 | 571 | 16 [14] | [15] 16 | zur | zur |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 311135 | NA (NA) | 3 (0.040) | 3/246 | NT | NA | coding (134/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311327 = | NA (NA) | coding (30/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 360104 = | 57 (0.800) | 72 (1.010) | 35/250 | NT | 55.8% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 370385 | 78 (1.510) | 14 (0.300) | 6/164 | NT | 16.6% | intergenic (+48/‑530) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| ? | CP009273 | = 372977 | NA (NA) | noncoding (187/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 1203246 = | 30 (0.420) | 26 (0.420) | 13/218 | NT | 50.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 24 (0.390) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 30 (0.420) | 35 (0.560) | 14/218 | NT | 58.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 24 (0.390) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 75 (1.070) | 34/246 | NT | 90.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2399636 = | 8 (0.110) | coding (485/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | CP009273 | = 2399639 | 6 (0.080) | 82 (1.150) | 35/250 | NT | 93.2% | coding (482/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | = 3124699 | NA (NA) | intergenic (+146/+1) | insH1/yghQ | IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase | |||||
| * | ? | CP009273 | 2597780 = | 68 (0.950) | 4 (0.060) | 3/242 | NT | 5.0% | coding (575/948 nt) | hyfC | hydrogenase 4, membrane subunit |
| ? | CP009273 | = 2597936 | 86 (1.250) | coding (731/948 nt) | hyfC | hydrogenase 4, membrane subunit | |||||