Wed Nov 28 16:31:32 2018

breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o EEP_IRON-NC_000913_3gb--BOP27Fe-citrate_A20F40-I1R1/breseq/AA289_S2057_ -r /Users/muyao/storage/mockamitesh/eep-amitesh-raw/EEP_Iron_ALE/working/NC_000913_3.gb /Users/muyao/storage/mockamitesh/eep-amitesh-raw/EEP_Iron_ALE/working/good/AA289_S2057__R1_001.good.fq /Users/muyao/storage/mockamitesh/eep-amitesh-raw/EEP_Iron_ALE/working/good/AA289_S2057__R2_001.good.fq