breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	3,160	C→T	7.1%	E408K (GAG→AAG)	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	20,139	T→C	5.9%	intergenic (+17/‑59)	PP_0015 → / → PP_0016	transposon protein/hypothetical protein
RA	20,140	T→G	5.9%	intergenic (+18/‑58)	PP_0015 → / → PP_0016	transposon protein/hypothetical protein
RA	20,143	C→A	5.9%	intergenic (+21/‑55)	PP_0015 → / → PP_0016	transposon protein/hypothetical protein
RA	36,169	G→T	6.1%	intergenic (+54/+29)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,171	A→T	6.5%	intergenic (+56/+27)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,172	A→T	6.0%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	6.9%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,886	T→C	10.5%	Y256C (TAT→TGT)	PP_0033 ←	undecaprenyl‑glycosyl transferase
RA	43,457	Δ1 bp	9.8%	intergenic (+23/+70)	PP_0040 → / ← cadA‑I	hypothetical protein/cadmium translocating P‑type ATPase
RA	43,461:1	+A	8.9%	intergenic (+27/+66)	PP_0040 → / ← cadA‑I	hypothetical protein/cadmium translocating P‑type ATPase
RA	58,747	T→A	10.4%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	10.7%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	71,791	A→T	13.0%	A38A (GCT→GCA)	glyS ←	glycine‑tRNA ligase subunit beta
RA	71,796	C→G	10.1%	A37P (GCT→CCT)	glyS ←	glycine‑tRNA ligase subunit beta
RA	71,801	A→T	10.1%	L35Q (CTG→CAG)	glyS ←	glycine‑tRNA ligase subunit beta
RA	92,184	G→T	5.7%	L66M (CTG→ATG)	trpA ←	tryptophan synthase subunit alpha
RA	92,186	T→C	5.7%	Q65R (CAG→CGG)	trpA ←	tryptophan synthase subunit alpha
RA	92,189	A→C	5.6%	I64S (ATC→AGC)	trpA ←	tryptophan synthase subunit alpha
RA	94,007	G→A	5.5%	G102S (GGC→AGC)	trpI →	HTH‑type transcriptional regulator TrpI
RA	97,592	G→T	10.5%	intergenic (+21/+15)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,593	A→T	8.9%	intergenic (+22/+14)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,594	A→C	11.2%	intergenic (+23/+13)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	103,818	A→T	8.7%	intergenic (+116/‑24)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,819	T→A	8.9%	intergenic (+117/‑23)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,820	T→A	8.6%	intergenic (+118/‑22)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,821	A→T	8.6%	intergenic (+119/‑21)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	104,876	G→C	7.6%	P345P (CCG→CCC)	PP_0099 →	hypothetical protein
RA	124,743	G→A	8.3%	Q125* (CAG→TAG)	PP_0119 ←	zinc uptake regulation protein Zur
RA	126,115	A→G	6.7%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	6.7%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	127,121	C→G	7.9%	intergenic (‑31/+39)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	127,122	C→G	7.9%	intergenic (‑32/+38)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	127,123	G→C	8.2%	intergenic (‑33/+37)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	132,251	C→T	5.6%	A148V (GCC→GTC)	cc →	cytochrome c4
RA	132,467	G→C	5.9%	intergenic (+41/‑111)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	138,949	G→A	6.6%	R519W (CGG→TGG)	kinB ←	alginate biosynthesis sensor protein KinB
RA	138,950	T→G	6.8%	R518S (AGA→AGC) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	138,951	C→A	6.8%	R518I (AGA→ATA) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	138,952	T→C	6.8%	R518G (AGA→GGA) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	145,794	T→C	7.2%	V343A (GTG→GCG)	gltP →	glutamate/aspartate‑proton DAACS transporter
RA	157,877	G→A	5.9%	intergenic (‑152/‑113)	citN ← / → PP_0148	citrate transporter/hypothetical protein
RA	163,978	Δ1 bp	5.6%	intergenic (‑145/+42)	scpC ← / ← pntB	propionyl‑CoA:succinate CoA transferase/pyridine nucleotide transhydrogenase subunit beta
RA	164,458	C→G	7.2%	A333A (GCG→GCC)	pntB ←	pyridine nucleotide transhydrogenase subunit beta
RA	164,462	A→T	7.1%	L332Q (CTG→CAG)	pntB ←	pyridine nucleotide transhydrogenase subunit beta
RA	164,466	C→G	7.7%	G331R (GGC→CGC)	pntB ←	pyridine nucleotide transhydrogenase subunit beta
RA	166,574	G→C	6.9%	A111A (GCC→GCG)	pntAA ←	pyridine nucleotide transhydrogenase subunit alpha
RA	166,579	T→C	7.7%	T110A (ACC→GCC)	pntAA ←	pyridine nucleotide transhydrogenase subunit alpha
RA	166,581	A→T	7.7%	I109N (ATT→AAT)	pntAA ←	pyridine nucleotide transhydrogenase subunit alpha
RA	166,583	G→A	7.6%	G108G (GGC→GGT)	pntAA ←	pyridine nucleotide transhydrogenase subunit alpha
RA	166,588	G→C	7.9%	R107G (CGC→GGC)	pntAA ←	pyridine nucleotide transhydrogenase subunit alpha
RA	181,805	T→C	15.9%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,811	C→T	14.7%	intergenic (+25/‑81)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	15.1%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	14.4%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	182,034	G→A	10.5%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	10.6%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	10.8%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	187,946	T→A	6.7%	F19I (TTC→ATC)	PP_0165 →	GGDEF domain‑containing protein
RA	195,559	C→A	50.0%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	58.1%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	5.9%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	23.6%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	24.0%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	25.1%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	20.0%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	5.5%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	15.1%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	11.5%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	15.7%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	17.1%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	19.3%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	8.2%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	210,699	T→A	6.9%	L5402Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	211,621	G→C	8.0%	V5709V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	226,661	A→T	8.0%	intergenic (+68/‑65)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	226,663	G→A	8.0%	intergenic (+70/‑63)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	233,832	A→T	7.2%	intergenic (+20/+43)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,833	C→G	7.1%	intergenic (+21/+42)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	239,949	A→G	7.6%	T82A (ACC→GCC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	268,746	G→C	6.5%	intergenic (‑77/+23)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,586	T→A	12.9%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,587	T→A	11.5%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	289,942	C→A	8.2%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,944	G→C	8.1%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,946	T→G	7.8%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	293,197	A→T	6.8%	D185V (GAC→GTC)	ssuD →	alkanesulfonate monooxygenase
RA	296,371	T→G	6.5%	E19A (GAG→GCG)	PP_0242 ←	TetR family transcriptional regulator
RA	298,117	C→G	5.7%	intergenic (‑114/+40)	gshA ← / ← PP_0244	glutamate‑‑cysteine ligase/hypothetical protein
RA	298,118	A→C	5.6%	intergenic (‑115/+39)	gshA ← / ← PP_0244	glutamate‑‑cysteine ligase/hypothetical protein
RA	298,119	G→T	5.6%	intergenic (‑116/+38)	gshA ← / ← PP_0244	glutamate‑‑cysteine ligase/hypothetical protein
RA	298,120	C→G	5.6%	intergenic (‑117/+37)	gshA ← / ← PP_0244	glutamate‑‑cysteine ligase/hypothetical protein
RA	307,865:1	+C	91.3%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	313,843	Δ1 bp	5.3%	intergenic (+16/+35)	ygaU → / ← yrfG	murein cross‑linking regulator/purine nucleotidase
RA	313,849	T→C	11.2%	intergenic (+22/+29)	ygaU → / ← yrfG	murein cross‑linking regulator/purine nucleotidase
RA	313,850:1	+A	9.9%	intergenic (+23/+28)	ygaU → / ← yrfG	murein cross‑linking regulator/purine nucleotidase
RA	313,966	A→T	7.7%	V192E (GTG→GAG)	yrfG ←	purine nucleotidase
RA	321,041	C→G	7.1%	C145W (TGC→TGG)	aguA →	agmatine deiminase
RA	321,740	T→C	8.2%	intergenic (+27/+431)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	321,741	G→A	8.2%	intergenic (+28/+430)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,133	G→A	12.9%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	11.3%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	338,065	G→T	8.8%	A168A (GCC→GCA)	PP_0280 ←	amino acid ABC transporter permease
RA	338,068	A→C	10.4%	S167R (AGT→AGG)	PP_0280 ←	amino acid ABC transporter permease
RA	344,032	A→G	8.1%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	10.0%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	10.4%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	358,085	A→G	15.2%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,087	C→T	13.0%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	T→C	13.6%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,091	G→A	13.9%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	A→G	13.0%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,096	C→T	13.2%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	382,125:1	+C	6.9%	coding (420/1626 nt)	PP_0317 ←	methyl‑accepting chemotaxis transducer
RA	382,131	Δ1 bp	6.7%	coding (414/1626 nt)	PP_0317 ←	methyl‑accepting chemotaxis transducer
RA	387,791	T→G	7.7%	S311A (TCC→GCC) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	387,792	C→T	7.7%	S311F (TCC→TTC) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	387,798	G→C	7.4%	G313A (GGC→GCC)	glyA‑I →	serine hydroxymethyltransferase
RA	387,804	A→G	7.2%	D315G (GAC→GGC) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	387,805	C→A	7.3%	D315E (GAC→GAA) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	389,850	G→C	7.1%	A42P (GCC→CCC)	soxA →	sarcosine oxidase subunit alpha
RA	391,576:1	+G	6.3%	coding (1850/3015 nt)	soxA →	sarcosine oxidase subunit alpha
RA	391,581	C→A	6.3%	L619M (CTG→ATG) ‡	soxA →	sarcosine oxidase subunit alpha
RA	391,582	T→G	6.2%	L619R (CTG→CGG) ‡	soxA →	sarcosine oxidase subunit alpha
RA	391,589	C→A	6.2%	A621A (GCC→GCA)	soxA →	sarcosine oxidase subunit alpha
RA	391,590	T→G	6.3%	W622G (TGG→GGG)	soxA →	sarcosine oxidase subunit alpha
RA	391,595	Δ1 bp	6.1%	coding (1869/3015 nt)	soxA →	sarcosine oxidase subunit alpha
RA	395,846	C→A	11.8%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,847	A→T	11.7%	intergenic (+29/+175)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,848	T→G	11.4%	intergenic (+30/+174)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	407,762	A→T	5.3%	A81A (GCT→GCA)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	407,765	A→T	5.3%	A80A (GCT→GCA)	aceF ←	AceF‑S‑acetyldihydrolipoate
RA	417,372	C→T	6.4%	P361L (CCG→CTG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,375	A→G	6.7%	Q362R (CAG→CGG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	418,296	C→G	5.8%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	422,067	C→G	6.8%	L627L (CTG→CTC)	PP_0348 ←	hypothetical protein
RA	427,376	G→T	6.1%	A141A (GCC→GCA)	PP_0350 ←	ferrichrome‑iron receptor
RA	432,012	A→G	7.4%	F101S (TTC→TCC)	PP_0354 ←	CBS domain‑containing protein
RA	432,015	C→T	7.7%	C100Y (TGC→TAC) ‡	PP_0354 ←	CBS domain‑containing protein
RA	432,016	A→G	7.8%	C100R (TGC→CGC) ‡	PP_0354 ←	CBS domain‑containing protein
RA	432,019	C→T	7.5%	E99K (GAG→AAG)	PP_0354 ←	CBS domain‑containing protein
RA	443,434	G→C	5.1%	R142R (CGG→CGC)	bioC →	malonyl‑ACP O‑methyltransferase
RA	443,435	G→C	5.1%	V143L (GTG→CTG)	bioC →	malonyl‑ACP O‑methyltransferase
RA	450,918	T→C	8.9%	noncoding (115/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,919	T→G	8.8%	noncoding (116/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,920	C→A	8.8%	noncoding (117/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,921	G→A	9.2%	noncoding (118/127 nt)	PP_mr05 →	RsmY ncRNA
RA	459,899	C→T	7.6%	intergenic (‑45/+34)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,904	A→C	8.1%	intergenic (‑50/+29)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,905	G→T	7.8%	intergenic (‑51/+28)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	459,910	A→G	7.8%	intergenic (‑56/+23)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	462,594	A→T	7.8%	intergenic (‑130/+11)	pqqF ← / ← davA	coenzyme PQQ synthesis protein F/5‑aminopentanamidase
RA	464,320	G→C	6.9%	H259Q (CAC→CAG) ‡	davB ←	lysine 2‑monooxygenase
RA	464,321	T→A	6.6%	H259L (CAC→CTC) ‡	davB ←	lysine 2‑monooxygenase
RA	464,322	G→C	7.7%	H259D (CAC→GAC) ‡	davB ←	lysine 2‑monooxygenase
RA	471,066	T→C	7.2%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,067	G→A	7.1%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	474,192	Δ1 bp	5.8%	coding (793/1983 nt)	dnaG ←	DNA primase
RA	474,196	G→C	5.9%	I263M (ATC→ATG)	dnaG ←	DNA primase
RA	474,199:1	+G	5.6%	coding (786/1983 nt)	dnaG ←	DNA primase
RA	482,860	Δ1 bp	7.3%	coding (1579/1923 nt)	yeaG ←	protein kinase
RA	487,825	G→C	6.3%	R159R (CGC→CGG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	487,829	A→G	6.5%	L158P (CTG→CCG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	487,831	G→C	6.4%	G157G (GGC→GGG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	487,837	G→C	6.5%	T155T (ACC→ACG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	503,593	T→A	5.2%	F208L (TTT→TTA)	PP_0414 →	polyamine ABC transporter permease
RA	503,813	A→G	9.4%	intergenic (+16/‑135)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,825	Δ1 bp	10.5%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,831	A→T	11.8%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	11.1%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	11.1%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	508,220	T→A	5.5%	N264I (AAC→ATC)	estP ←	esterase EstP
RA	513,453	T→G	6.6%	intergenic (‑100/‑91)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,459	A→T	6.7%	intergenic (‑106/‑85)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,460	C→T	6.9%	intergenic (‑107/‑84)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,461	T→A	7.0%	intergenic (‑108/‑83)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,462	A→G	6.8%	intergenic (‑109/‑82)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,463	A→T	6.8%	intergenic (‑110/‑81)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,469	C→A	6.1%	intergenic (‑116/‑75)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	519,673	G→A	5.7%	intergenic (+27/‑73)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,674	T→C	5.7%	intergenic (+28/‑72)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,675	C→G	5.5%	intergenic (+29/‑71)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,676	G→A	5.7%	intergenic (+30/‑70)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,677	T→C	5.7%	intergenic (+31/‑69)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	538,396	C→T	10.7%	D258D (GAC→GAT)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	538,397	A→G	10.5%	I259V (ATC→GTC)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	564,377:1	+A	8.2%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,382	Δ1 bp	6.9%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	566,620	C→T	6.6%	intergenic (+32/+41)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,624	A→G	6.4%	intergenic (+36/+37)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,630	A→G	6.9%	intergenic (+42/+31)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	571,617	G→A	6.6%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,618	T→C	6.6%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	605,126	A→T	5.7%	S147C (AGC→TGC)	thiL →	thiamin monophosphate kinase
RA	605,131	T→C	5.2%	G148G (GGT→GGC)	thiL →	thiamin monophosphate kinase
RA	608,245	C→T	7.5%	A39V (GCC→GTC)	PP_0524 →	cobalamin‑binding protein HutB
RA	609,779	A→C	9.5%	L356R (CTG→CGG) ‡	PP_0525 ←	B12 family TonB‑dependent receptor
RA	609,780	G→T	9.7%	L356M (CTG→ATG) ‡	PP_0525 ←	B12 family TonB‑dependent receptor
RA	612,541	C→T	7.3%	E547E (GAG→GAA)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,547	C→A	7.3%	L545L (CTG→CTT)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,551	G→C	7.0%	P544R (CCG→CGG)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,555	T→G	7.1%	K543Q (AAG→CAG)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,561	A→G	7.1%	F541L (TTC→CTC)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	644,140	G→C	9.1%	R293G (CGC→GGC)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	644,141	G→C	9.0%	A292A (GCC→GCG)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	646,272	T→A	10.2%	intergenic (‑178/‑106)	PP_0556 ← / → acoR	acetoin catabolism protein/acetoin catabolism regulatory protein
RA	648,287	A→C	13.3%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,289	A→T	10.1%	intergenic (+58/+33)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,291	G→T	9.4%	intergenic (+60/+31)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	652,764	G→C	7.8%	intergenic (‑101/+17)	dsbD‑I ← / ← ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
RA	652,767	G→C	6.8%	intergenic (‑104/+14)	dsbD‑I ← / ← ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
RA	657,221	A→G	9.8%	D218G (GAC→GGC)	PP_0564 →	hypothetical protein
RA	657,224	T→A	6.6%	V219D (GTC→GAC)	PP_0564 →	hypothetical protein
RA	660,589	G→A	10.2%	V545V (GTG→GTA)	speA →	biosynthetic arginine decarboxylase
RA	660,592	T→C	10.2%	G546G (GGT→GGC)	speA →	biosynthetic arginine decarboxylase
RA	660,593	G→A	10.1%	A547T (GCC→ACC)	speA →	biosynthetic arginine decarboxylase
RA	660,596	T→C	9.8%	Y548H (TAC→CAC)	speA →	biosynthetic arginine decarboxylase
RA	666,886	C→A	10.5%	P1251H (CCC→CAC)	yfhM →	lipoprotein
RA	671,319	A→T	7.7%	E125V (GAA→GTA)	PP_0573 →	hypothetical protein
RA	671,325	A→T	7.7%	Q127L (CAG→CTG)	PP_0573 →	hypothetical protein
RA	675,587	A→T	8.7%	C38S (TGC→AGC)	PP_0577 ←	hypothetical protein
RA	675,589	C→G	8.9%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,591	A→T	8.9%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	680,294	A→G	9.1%	N394S (AAC→AGC) ‡	PP_0582 →	thiolase family protein
RA	680,295	C→G	9.2%	N394K (AAC→AAG) ‡	PP_0582 →	thiolase family protein
RA	680,296	C→T	9.2%	L395L (CTG→TTG)	PP_0582 →	thiolase family protein
RA	687,721	T→A	7.2%	L196M (TTG→ATG)	ydgK →	Bcr/CflA family multidrug resistance transporter
RA	689,978	A→G	6.5%	V220A (GTG→GCG)	PP_0591 ←	adenosine deaminase
RA	693,590	C→G	10.9%	G151A (GGC→GCC)	PP_0595 ←	LysR family transcriptional regulator
RA	698,287	Δ1 bp	6.2%	noncoding (464/1522 nt)	PP_16SD →	16S ribosomal RNA
RA	699,722	A→G	60.4%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	9.9%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	9.7%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	9.8%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	708,755	T→C	7.8%	I386T (ATC→ACC) ‡	murJ →	lipid II flippase
RA	708,756	C→T	7.7%	I386I (ATC→ATT) ‡	murJ →	lipid II flippase
RA	708,759	A→G	8.2%	A387A (GCA→GCG)	murJ →	lipid II flippase
RA	708,760	G→A	7.9%	V388I (GTC→ATC)	murJ →	lipid II flippase
RA	712,373	T→C	6.1%	F724S (TTC→TCC)	ileS →	isoleucine‑‑tRNA ligase
RA	713,096	A→G	8.5%	I29V (ATC→GTC)	lspA →	lipoprotein signal peptidase
RA	715,959	C→T	7.0%	Q60* (CAG→TAG)	PP_0609 →	hypothetical protein
RA	733,244	A→T	8.6%	intergenic (+219/‑144)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,245	A→G	7.5%	intergenic (+220/‑143)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,249	A→T	7.5%	intergenic (+224/‑139)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	740,783	G→C	8.3%	intergenic (‑157/‑60)	pilC ← / → pilA	type IV fimbrial assembly protein PilC/fimbrial protein
RA	740,785	T→A	7.5%	intergenic (‑159/‑58)	pilC ← / → pilA	type IV fimbrial assembly protein PilC/fimbrial protein
RA	740,786	G→A	7.4%	intergenic (‑160/‑57)	pilC ← / → pilA	type IV fimbrial assembly protein PilC/fimbrial protein
RA	740,791	T→C	7.4%	intergenic (‑165/‑52)	pilC ← / → pilA	type IV fimbrial assembly protein PilC/fimbrial protein
RA	740,792	T→A	7.5%	intergenic (‑166/‑51)	pilC ← / → pilA	type IV fimbrial assembly protein PilC/fimbrial protein
RA	740,794	G→C	7.6%	intergenic (‑168/‑49)	pilC ← / → pilA	type IV fimbrial assembly protein PilC/fimbrial protein
RA	743,432	A→C	5.7%	intergenic (+111/+163)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,439	T→G	5.3%	intergenic (+118/+156)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,440	T→A	6.1%	intergenic (+119/+155)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,441	C→A	5.2%	intergenic (+120/+154)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,448	G→T	7.1%	intergenic (+127/+147)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	766,922	C→T	6.3%	C138C (TGC→TGT)	metB →	cystathionine gamma‑synthase
RA	772,178	T→C	7.9%	intergenic (+39/‑160)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,179	T→G	8.0%	intergenic (+40/‑159)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,182	C→A	8.7%	intergenic (+43/‑156)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,183	G→A	8.2%	intergenic (+44/‑155)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	788,581	C→A	11.8%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,583	A→T	11.4%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,584	A→T	11.4%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	T→G	11.0%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	790,957	T→A	9.8%	Q46L (CAG→CTG)	PP_0677 ←	lipoprotein
RA	798,662	C→A	6.4%	intergenic (+17/+10)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,663	C→G	6.0%	intergenic (+18/+9)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,664	T→G	6.0%	intergenic (+19/+8)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	802,771	C→A	5.7%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,772	T→G	5.7%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	827,491	C→T	5.9%	intergenic (+61/‑46)	ycaC‑I → / → ppkB	putative hydrolase/polyphosphate kinase
RA	830,867	G→C	7.8%	A47A (GCG→GCC)	PP_0715 →	outer membrane efflux protein
RA	852,159	A→T	6.0%	Q313L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	852,164	G→C	6.9%	A315P (GCG→CCG) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,165	C→G	6.9%	A315G (GCG→GGG) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,166	G→C	6.9%	A315A (GCG→GCC) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,171	A→T	6.1%	Q317L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	853,763	T→C	6.5%	R62R (CGT→CGC)	prmC →	release factor‑(glutamine‑N5) methyltransferase
RA	856,078	G→A	8.0%	A9A (GCG→GCA)	pagL‑I →	lipid A 3‑O‑deacylase
RA	856,081	T→C	8.3%	A10A (GCT→GCC)	pagL‑I →	lipid A 3‑O‑deacylase
RA	874,539	G→C	6.4%	E40Q (GAA→CAA) ‡	PP_0759 →	hypothetical protein
RA	874,540	A→G	6.2%	E40G (GAA→GGA) ‡	PP_0759 →	hypothetical protein
RA	875,283	A→C	7.3%	intergenic (+22/+24)	PP_0759 → / ← PP_0760	hypothetical protein/membrane protein
RA	875,284	T→A	7.3%	intergenic (+23/+23)	PP_0759 → / ← PP_0760	hypothetical protein/membrane protein
RA	883,194	G→A	7.5%	R266H (CGC→CAC)	PP_0766 →	hypothetical protein
RA	886,082	T→C	6.3%	W665R (TGG→CGG) ‡	PP_0767 →	LuxR family transcriptional regulator
RA	886,083	G→C	6.2%	W665S (TGG→TCG) ‡	PP_0767 →	LuxR family transcriptional regulator
RA	895,198	G→C	13.3%	intergenic (+38/+26)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,201	T→C	16.3%	intergenic (+41/+23)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,207	G→C	16.3%	intergenic (+47/+17)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,210	G→C	15.8%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,216	G→A	15.5%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→C	15.6%	intergenic (+59/+5)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	901,418	G→A	10.3%	intergenic (‑137/‑194)	cysZ ← / → trxB	sulfate transport protein CysZ/thioredoxin reductase
RA	901,419	A→T	10.4%	intergenic (‑138/‑193)	cysZ ← / → trxB	sulfate transport protein CysZ/thioredoxin reductase
RA	901,420	T→C	10.3%	intergenic (‑139/‑192)	cysZ ← / → trxB	sulfate transport protein CysZ/thioredoxin reductase
RA	909,694	C→T	6.2%	R68C (CGT→TGT)	fruB →	PTS fructose transporter subunit EI/HPr/IIA
RA	924,319	T→C	11.7%	T292A (ACG→GCG)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,320	C→G	12.3%	A291A (GCG→GCC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,321	G→A	10.7%	A291V (GCG→GTG) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	936,058	G→A	6.1%	G3188G (GGC→GGT)	PP_0806 ←	surface adhesion protein
RA	936,213	T→C	5.4%	N3137D (AAC→GAC)	PP_0806 ←	surface adhesion protein
RA	936,220	G→A	5.8%	A3134A (GCC→GCT) ‡	PP_0806 ←	surface adhesion protein
RA	936,221	G→C	5.8%	A3134G (GCC→GGC) ‡	PP_0806 ←	surface adhesion protein
RA	936,224	G→C	6.1%	P3133R (CCG→CGG)	PP_0806 ←	surface adhesion protein
RA	936,227	G→C	7.4%	T3132S (ACC→AGC) ‡	PP_0806 ←	surface adhesion protein
RA	936,228	T→C	6.2%	T3132A (ACC→GCC) ‡	PP_0806 ←	surface adhesion protein
RA	936,268	G→A	7.3%	S3118S (AGC→AGT)	PP_0806 ←	surface adhesion protein
RA	953,229	A→G	13.4%	H13R (CAC→CGC) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,230	C→T	14.9%	H13H (CAC→CAT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,238	G→A	11.9%	G16E (GGG→GAG)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	955,076	Δ1 bp	11.1%	intergenic (+30/‑283)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,080	T→A	11.5%	intergenic (+34/‑279)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,082:1	+G	11.5%	intergenic (+36/‑277)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,149	A→G	14.2%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	14.1%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	13.3%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	13.8%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	13.2%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	960,082	C→T	8.7%	I117I (ATC→ATT)	PP_0821 →	hypothetical protein
RA	961,705	A→G	7.2%	V237A (GTC→GCC)	selD ←	selenide, water dikinase
RA	961,709	G→C	7.0%	L236V (CTG→GTG)	selD ←	selenide, water dikinase
RA	961,710	G→C	7.0%	H235Q (CAC→CAG)	selD ←	selenide, water dikinase
RA	961,714	C→T	7.1%	G234D (GGC→GAC)	selD ←	selenide, water dikinase
RA	961,720	A→T	8.7%	L232Q (CTG→CAG)	selD ←	selenide, water dikinase
RA	964,019	G→A	7.1%	A210T (GCC→ACC)	phnC →	phosphonate ABC transporter ATP‑binding protein
RA	972,232	G→C	9.7%	G175A (GGC→GCC)	secD →	protein translocase subunit SecD
RA	972,235	G→C	9.7%	G176A (GGC→GCC)	secD →	protein translocase subunit SecD
RA	977,873	T→A	10.0%	intergenic (+39/‑141)	cysE → / → iscR	serine acetyltransferase/DNA‑binding transcriptional regulator IscR
RA	977,876	T→A	10.0%	intergenic (+42/‑138)	cysE → / → iscR	serine acetyltransferase/DNA‑binding transcriptional regulator IscR
RA	983,581	T→A	6.9%	intergenic (+39/‑50)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,584	A→T	8.2%	intergenic (+42/‑47)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,587	T→A	8.0%	intergenic (+45/‑44)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	985,932	G→C	10.4%	E232Q (GAA→CAA)	pilF →	type IV pili biogenesis protein PilF
RA	985,937	G→C	10.2%	L233F (TTG→TTC)	pilF →	type IV pili biogenesis protein PilF
RA	989,155	G→T	7.9%	C336F (TGC→TTC)	hisS →	histidine‑‑tRNA ligase
RA	989,160	T→A	8.3%	F338I (TTT→ATT) ‡	hisS →	histidine‑‑tRNA ligase
RA	989,161	T→A	8.3%	F338Y (TTT→TAT) ‡	hisS →	histidine‑‑tRNA ligase
RA	989,162	T→A	8.3%	F338L (TTT→TTA) ‡	hisS →	histidine‑‑tRNA ligase
RA	989,167	A→C	10.0%	E340A (GAA→GCA)	hisS →	histidine‑‑tRNA ligase
RA	990,352	T→A	7.6%	V78D (GTC→GAC)	PP_0856 →	lipoprotein
RA	1,010,931	A→T	7.9%	Y44* (TAT→TAA)	PP_0871 ←	glycine betaine/carnitine/choline ABC transporter permease
RA	1,010,934	A→T	8.2%	R43R (CGT→CGA)	PP_0871 ←	glycine betaine/carnitine/choline ABC transporter permease
RA	1,010,938:1	+A	6.9%	coding (125/744 nt)	PP_0871 ←	glycine betaine/carnitine/choline ABC transporter permease
RA	1,013,241	G→C	14.9%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	15.0%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	14.6%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	15.9%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	14.0%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,017,452	G→T	5.6%	S137* (TCA→TAA) ‡	PP_5461 ←	hypothetical protein
RA	1,017,453	A→C	6.4%	S137A (TCA→GCA) ‡	PP_5461 ←	hypothetical protein
RA	1,017,454	T→A	7.0%	S136S (TCA→TCT)	PP_5461 ←	hypothetical protein
RA	1,025,784	T→G	9.1%	D395A (GAC→GCC)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,025,786	C→G	9.3%	A394A (GCG→GCC) ‡	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,025,788	C→A	9.2%	A394S (GCG→TCG) ‡	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,030,791:1	+T	5.6%	coding (849/1353 nt)	PP_0887 →	sensor histidine kinase
RA	1,030,799	A→T	10.7%	E286V (GAG→GTG) ‡	PP_0887 →	sensor histidine kinase
RA	1,030,800	G→C	10.8%	E286D (GAG→GAC) ‡	PP_0887 →	sensor histidine kinase
RA	1,030,801	A→T	10.8%	T287S (ACT→TCT)	PP_0887 →	sensor histidine kinase
RA	1,030,808	Δ1 bp	5.3%	coding (866/1353 nt)	PP_0887 →	sensor histidine kinase
RA	1,031,246	G→C	5.2%	G435A (GGC→GCC)	PP_0887 →	sensor histidine kinase
RA	1,033,803	T→A	6.5%	D141E (GAT→GAA)	PP_0891 →	hypothetical protein
RA	1,033,808	G→C	6.4%	R143P (CGG→CCG)	PP_0891 →	hypothetical protein
RA	1,033,813	T→A	6.3%	F145I (TTC→ATC)	PP_0891 →	hypothetical protein
RA	1,059,963	A→C	5.1%	I37L (ATC→CTC)	iciA →	chromosome initiation inhibitor
RA	1,066,335	T→C	8.8%	S89G (AGC→GGC)	PP_0924 ←	hypothetical protein
RA	1,066,338	T→C	8.7%	S88G (AGC→GGC)	PP_0924 ←	hypothetical protein
RA	1,066,339	G→A	8.7%	A87A (GCC→GCT)	PP_0924 ←	hypothetical protein
RA	1,066,342	G→A	8.6%	A86A (GCC→GCT)	PP_0924 ←	hypothetical protein
RA	1,069,829	G→A	6.8%	V331M (GTG→ATG) ‡	aroP‑I →	aromatic amino acid transport protein
RA	1,069,830	T→C	6.6%	V331A (GTG→GCG) ‡	aroP‑I →	aromatic amino acid transport protein
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,260	G→C	15.6%	intergenic (+60/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,263	G→C	15.2%	intergenic (+63/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,089,216	A→G	5.9%	Q26R (CAG→CGG)	fumC‑I →	class 2 fumarate hydratase
RA	1,089,805	G→C	7.0%	Q222H (CAG→CAC)	fumC‑I →	class 2 fumarate hydratase
RA	1,089,811	A→T	6.7%	G224G (GGA→GGT)	fumC‑I →	class 2 fumarate hydratase
RA	1,089,812	A→T	6.6%	T225S (ACC→TCC)	fumC‑I →	class 2 fumarate hydratase
RA	1,103,269	G→T	6.3%	A10S (GCT→TCT)	murA →	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	1,114,349	T→A	10.2%	N153I (AAT→ATT)	rlmF ←	ribosomal RNA large subunit methyltransferase F
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,130,192	A→T	12.0%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,145,433	C→T	7.3%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,440	G→A	7.0%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,441	T→C	7.0%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,448	A→G	9.4%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,148,948	C→T	7.2%	L99L (TTG→TTA)	PP_1007 ←	transmembrane sensor
RA	1,155,458	C→G	6.3%	P206A (CCG→GCG)	PP_1013 →	sensor histidine kinase
RA	1,155,463	C→G	6.4%	R207R (CGC→CGG)	PP_1013 →	sensor histidine kinase
RA	1,155,467	C→G	7.9%	Q209E (CAG→GAG)	PP_1013 →	sensor histidine kinase
RA	1,155,470	A→T	6.6%	I210F (ATC→TTC)	PP_1013 →	sensor histidine kinase
RA	1,158,920	G→A	6.7%	M351I (ATG→ATA)	gtsA →	mannose/glucose ABC transporter substrate‑binding protein
RA	1,168,000	C→T	11.3%	L75L (CTC→CTT)	eda →	KHG/KDPG aldolase
RA	1,168,001	A→G	11.5%	K76E (AAG→GAG)	eda →	KHG/KDPG aldolase
RA	1,178,751	T→A	10.1%	intergenic (+56/+38)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,752	G→T	10.2%	intergenic (+57/+37)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,753	A→C	9.9%	intergenic (+58/+36)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,754	T→A	10.1%	intergenic (+59/+35)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,182,865	T→G	5.5%	intergenic (+32/+62)	tadA → / ← mltF	tRNA adenosine(34) deaminase TadA/membrane‑bound lytic murein transglycosylase F
RA	1,184,585	G→C	13.0%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,588	G→C	12.7%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,605	C→T	13.2%	intergenic (‑221/‑191)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,612	A→T	11.9%	intergenic (‑228/‑184)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,617	G→A	11.7%	intergenic (‑233/‑179)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,619	G→C	6.5%	intergenic (‑235/‑177)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,621	C→T	6.1%	intergenic (‑237/‑175)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,622	G→A	6.1%	intergenic (‑238/‑174)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,625	C→G	6.5%	intergenic (‑241/‑171)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,634:1	+G	6.7%	intergenic (‑250/‑162)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,979	C→A	7.8%	R41L (CGG→CTG)	tatB‑I ←	Sec‑independent protein translocase TatB
RA	1,190,660	A→C	5.7%	Q61P (CAG→CCG)	xcpX →	type II secretion system protein K
RA	1,205,640	G→A	8.5%	P41L (CCC→CTC)	PP_1057 ←	PadR family transcriptional regulator
RA	1,205,643	T→A	8.3%	Q40L (CAG→CTG)	PP_1057 ←	PadR family transcriptional regulator
RA	1,205,646	T→C	8.5%	E39G (GAG→GGG)	PP_1057 ←	PadR family transcriptional regulator
RA	1,210,827	T→A	19.7%	intergenic (+17/+20)	ytnA → / ← PP_1060	amino acid permease YtnA/glutamate synthase large subunit
RA	1,210,828	T→A	19.5%	intergenic (+18/+19)	ytnA → / ← PP_1060	amino acid permease YtnA/glutamate synthase large subunit
RA	1,210,829	T→A	18.9%	intergenic (+19/+18)	ytnA → / ← PP_1060	amino acid permease YtnA/glutamate synthase large subunit
RA	1,224,630	C→T	7.5%	W16* (TGG→TGA) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,224,631	C→G	7.6%	W16S (TGG→TCG) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,224,632	A→G	7.4%	W16R (TGG→CGG) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,226,707	T→A	9.5%	intergenic (‑217/‑114)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,226,710	T→A	8.3%	intergenic (‑220/‑111)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,229,079	G→C	9.3%	E753D (GAG→GAC)	PP_1072 →	leucine‑rich repeat‑containing protein
RA	1,232,735	C→T	10.7%	intergenic (‑23/+194)	glpD ← / ← glpR	aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR
RA	1,232,736	G→C	11.0%	intergenic (‑24/+193)	glpD ← / ← glpR	aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR
RA	1,232,737	A→G	10.9%	intergenic (‑25/+192)	glpD ← / ← glpR	aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR
RA	1,233,767	A→C	11.2%	intergenic (‑83/+19)	glpR ← / ← glpK	DNA‑binding transcriptional repressor GlpR/glycerol kinase
RA	1,233,768	T→A	13.4%	intergenic (‑84/+18)	glpR ← / ← glpK	DNA‑binding transcriptional repressor GlpR/glycerol kinase
RA	1,233,769	G→T	11.8%	intergenic (‑85/+17)	glpR ← / ← glpK	DNA‑binding transcriptional repressor GlpR/glycerol kinase
RA	1,241,962:1	+T	7.9%	intergenic (+27/+31)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,241,967	Δ1 bp	8.1%	intergenic (+32/+26)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,245,697	A→G	7.4%	S18G (AGC→GGC)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,701	T→G	7.1%	L19R (CTG→CGG)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,704	C→A	10.3%	P20Q (CCG→CAG)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,708	C→T	10.6%	A21A (GCC→GCT)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,895	C→A	6.8%	L84M (CTG→ATG) ‡	PP_1087 →	OmpA family outer membrane protein
RA	1,245,896	T→G	6.7%	L84R (CTG→CGG) ‡	PP_1087 →	OmpA family outer membrane protein
RA	1,248,213	C→A	7.1%	intergenic (+26/+42)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,214	T→C	7.1%	intergenic (+27/+41)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,217	G→A	7.1%	intergenic (+30/+38)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,248,218	T→G	7.1%	intergenic (+31/+37)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,249,749	A→T	7.7%	intergenic (+22/+49)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,249,751	C→G	7.7%	intergenic (+24/+47)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,249,753	A→T	9.1%	intergenic (+26/+45)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,256,881	A→T	7.0%	noncoding (434/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,882	G→T	7.0%	noncoding (433/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,883	A→C	6.6%	noncoding (432/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,884	A→T	7.0%	noncoding (431/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,263,488	C→T	7.5%	A307T (GCC→ACC)	PP_1105 ←	ATP‑dependent DNA ligase
RA	1,266,910	G→C	5.6%	R360G (CGC→GGC)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,278,482	A→T	6.1%	intergenic (‑309/+254)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,278,483	A→T	6.0%	intergenic (‑310/+253)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,278,484	A→T	6.0%	intergenic (‑311/+252)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,284,329	C→A	10.2%	T89T (ACC→ACA)	PP_1121 →	OmpA family protein
RA	1,284,332	G→A	10.0%	P90P (CCG→CCA)	PP_1121 →	OmpA family protein
RA	1,284,335	T→C	10.4%	R91R (CGT→CGC)	PP_1121 →	OmpA family protein
RA	1,284,338	T→G	8.8%	G92G (GGT→GGG)	PP_1121 →	OmpA family protein
RA	1,293,255	T→G	5.8%	A286A (GCT→GCG)	PP_1128 →	OmpA family protein
RA	1,295,013	Δ1 bp	9.2%	intergenic (+29/+41)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,018	T→A	11.1%	intergenic (+34/+36)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,021	T→A	11.1%	intergenic (+37/+33)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,025:1	+T	7.2%	intergenic (+41/+29)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,296,264	G→C	6.4%	intergenic (‑17/‑549)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,267	Δ1 bp	5.1%	intergenic (‑20/‑546)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,271	C→T	6.2%	intergenic (‑24/‑542)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,276	A→G	6.3%	intergenic (‑29/‑537)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,279:1	+G	6.3%	intergenic (‑32/‑534)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,282	G→C	6.2%	intergenic (‑35/‑531)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,306,911	G→T	8.0%	A236D (GCT→GAT)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,306,916	G→C	7.6%	R234R (CGC→CGG) ‡	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,306,917	C→G	7.5%	R234P (CGC→CCC) ‡	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,306,918	G→C	7.5%	R234G (CGC→GGC) ‡	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,306,923	A→C	7.6%	I232S (ATC→AGC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,307,440	C→G	12.7%	G60R (GGC→CGC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,307,441	C→G	12.7%	A59A (GCG→GCC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,307,449	T→G	8.6%	N57H (AAC→CAC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,310,443	G→C	6.7%	L364V (CTG→GTG)	PP_1144 ←	membrane protein
RA	1,310,445	T→A	6.3%	D363V (GAC→GTC)	PP_1144 ←	membrane protein
RA	1,310,447	G→C	6.1%	H362Q (CAC→CAG)	PP_1144 ←	membrane protein
RA	1,320,300	T→A	7.3%	T811S (ACA→TCA)	PP_1154 ←	sensory box protein
RA	1,327,121	C→T	56.9%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,333,351	G→C	6.6%	intergenic (+932/‑324)	PP_1157 → / → PP_1159	acetolactate synthase/membrane protein
RA	1,355,600	C→T	5.9%	A44V (GCC→GTC)	PP_1180 →	hypothetical protein
RA	1,356,030	A→G	11.1%	intergenic (+297/‑95)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,035	C→G	10.7%	intergenic (+302/‑90)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,040	G→C	12.2%	intergenic (+307/‑85)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,043	C→T	10.4%	intergenic (+310/‑82)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,366,229	T→C	5.1%	E157E (GAA→GAG)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,232	C→G	5.3%	L156L (CTG→CTC)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,548	T→G	9.5%	E51A (GAG→GCG)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,551	A→T	9.4%	V50D (GTC→GAC)	PP_1191 ←	S4 domain‑containing protein
RA	1,366,554	C→A	9.6%	R49L (CGC→CTC)	PP_1191 ←	S4 domain‑containing protein
RA	1,381,491	A→C	6.4%	Y81S (TAC→TCC) ‡	dinB →	DNA polymerase IV
RA	1,381,492	C→A	6.4%	Y81* (TAC→TAA) ‡	dinB →	DNA polymerase IV
RA	1,381,495	T→G	6.4%	R82R (CGT→CGG)	dinB →	DNA polymerase IV
RA	1,381,496	G→T	6.2%	E83* (GAG→TAG)	dinB →	DNA polymerase IV
RA	1,382,535	G→T	8.3%	L256I (CTC→ATC)	PP_1204 ←	lipoprotein
RA	1,382,537	T→A	8.3%	D255V (GAC→GTC)	PP_1204 ←	lipoprotein
RA	1,383,254	A→T	7.7%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein
RA	1,383,625	A→C	6.1%	L469R (CTG→CGG) ‡	proS ←	proline‑‑tRNA ligase
RA	1,383,626	G→T	7.3%	L469M (CTG→ATG) ‡	proS ←	proline‑‑tRNA ligase
RA	1,383,630	G→T	6.6%	D467E (GAC→GAA) ‡	proS ←	proline‑‑tRNA ligase
RA	1,383,631	T→C	6.5%	D467G (GAC→GGC) ‡	proS ←	proline‑‑tRNA ligase
RA	1,390,996	G→C	7.4%	G268A (GGC→GCC)	aspS →	aspartate‑‑tRNA ligase
RA	1,392,039	G→A	6.3%	intergenic (+70/‑45)	aspS → / → PP_1214	aspartate‑‑tRNA ligase/transcriptional regulator
RA	1,392,041	C→G	6.2%	intergenic (+72/‑43)	aspS → / → PP_1214	aspartate‑‑tRNA ligase/transcriptional regulator
RA	1,392,043	T→C	6.1%	intergenic (+74/‑41)	aspS → / → PP_1214	aspartate‑‑tRNA ligase/transcriptional regulator
RA	1,400,872	C→A	6.5%	intergenic (+35/‑134)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,874	A→T	6.4%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,876	T→G	7.4%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,410,289	T→A	5.5%	I320N (ATT→AAT)	nadA →	quinolinate synthase iron‑sulfur cluster subunit
RA	1,416,862	G→A	9.4%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,868	T→A	9.2%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,874	T→C	9.0%	L41P (CTG→CCG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,417,555	A→T	6.3%	E5V (GAA→GTA)	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,419,548:1	+C	52.3%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,424,253	G→T	8.2%	A322S (GCT→TCT)	PP_5467 →	hypothetical protein
RA	1,425,650	T→C	10.6%	intergenic (+52/‑453)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,655	C→T	9.3%	intergenic (+57/‑448)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,656	A→G	9.3%	intergenic (+58/‑447)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,661	G→A	9.3%	intergenic (+63/‑442)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,429,512	G→A	9.8%	intergenic (+29/‑451)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,429,515	G→T	9.8%	intergenic (+32/‑448)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,429,516	A→C	9.7%	intergenic (+33/‑447)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,429,517	G→T	9.7%	intergenic (+34/‑446)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,429,518	A→C	9.7%	intergenic (+35/‑445)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,429,521	T→C	9.6%	intergenic (+38/‑442)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,431,880	T→C	8.9%	intergenic (‑9/‑41)	PP_1253 ← / → xenA	ArsR family transcriptional regulator/protein XenA
RA	1,431,883	G→A	8.7%	intergenic (‑12/‑38)	PP_1253 ← / → xenA	ArsR family transcriptional regulator/protein XenA
RA	1,447,937	C→T	8.1%	Q679* (CAG→TAG)	PP_1264 →	fusaric acid resistance protein
RA	1,448,209	T→A	7.1%	L47Q (CTG→CAG)	PP_1265 →	hypothetical protein
RA	1,448,212	T→A	7.1%	L48Q (CTG→CAG)	PP_1265 →	hypothetical protein
RA	1,449,140	G→A	7.1%	*287* (TGA→TAA)	PP_1266 →	fusaric acid resistance protein
RA	1,458,117	T→G	14.3%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,119	A→T	13.6%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,121	C→A	14.2%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,469,808	A→G	8.0%	V112A (GTG→GCG)	algK ←	alginate biosynthesis protein AlgK
RA	1,474,832	T→A	6.6%	intergenic (‑612/+189)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,492,267	T→G	6.7%	intergenic (+28/+67)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,506,927	G→A	7.4%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	7.4%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,934	C→T	7.2%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,070	T→A	10.9%	Q166L (CAG→CTG)	PP_1325 ←	putative lipoprotein
RA	1,521,246	T→G	7.9%	F168C (TTC→TGC) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,247	C→G	7.6%	F168L (TTC→TTG) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,248	C→A	7.9%	Q169K (CAG→AAG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,524,047	G→C	7.6%	A251P (GCT→CCT)	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,524,307	T→G	6.5%	A337A (GCT→GCG)	murG →	UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑ (pentapeptide) pyrophosphoryl‑undecaprenol N‑acetylglucosamine transferase
RA	1,526,580	T→A	9.5%	I256N (ATT→AAT)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,526,589	A→C	9.0%	E259A (GAA→GCA)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,534,881	T→G	5.2%	intergenic (+72/‑111)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,889	T→C	6.6%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,893	C→T	7.9%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,898	A→G	7.4%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,902	G→A	7.4%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,908	A→G	7.5%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,556,299	C→T	6.8%	A68V (GCG→GTG)	purU‑II →	formyltetrahydrofolate hydrolase
RA	1,558,481	Δ1 bp	5.3%	coding (420/732 nt)	PP_1369 ←	hypothetical protein
RA	1,562,479	C→T	5.9%	A74V (GCG→GTG)	PP_1372 →	hypothetical protein
RA	1,570,438	A→C	13.2%	intergenic (+46/‑142)	pcaF‑I → / → pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
RA	1,581,266	G→T	100%	A44D (GCC→GAC)	ttgB ←	efflux pump membrane protein TtgB
RA	1,588,427	C→G	8.1%	A224A (GCG→GCC)	PP_1393 ←	transcriptional regulator
RA	1,591,249	C→T	7.7%	P215P (CCG→CCA)	PP_1395 ←	AraC family transcriptional regulator
RA	1,598,852	T→G	5.6%	intergenic (‑91/+40)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,620,348	C→G	6.6%	intergenic (‑114/‑87)	opdH ← / → tctD	tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD
RA	1,634,129	C→G	6.9%	D20E (GAC→GAG)	rnc →	ribonuclease 3
RA	1,634,132	G→T	6.7%	Q21H (CAG→CAT)	rnc →	ribonuclease 3
RA	1,634,133	A→C	6.4%	M22L (ATG→CTG)	rnc →	ribonuclease 3
RA	1,637,307	A→G	5.8%	intergenic (+16/+50)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,315	T→C	5.9%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,325	A→T	12.1%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	12.0%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,336	G→A	11.3%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,342	A→G	10.5%	intergenic (+51/+15)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,344	C→T	7.7%	intergenic (+53/+13)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,639,596	C→T	11.6%	intergenic (‑186/‑125)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,642,277	G→C	5.9%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,279	G→C	6.0%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,285	G→C	6.7%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,656,012	Δ1 bp	8.3%	coding (757/4527 nt)	PP_1449 ←	hypothetical protein
RA	1,656,016:1	+C	8.6%	coding (753/4527 nt)	PP_1449 ←	hypothetical protein
RA	1,658,812	C→T	8.0%	V128M (GTG→ATG)	PP_1451 ←	hypothetical protein
RA	1,661,483	T→G	8.2%	V52G (GTC→GGC)	PP_1456 →	membrane protein
RA	1,665,249	T→G	5.1%	I207L (ATC→CTC)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,250	G→C	5.1%	R206R (CGC→CGG)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,253	T→A	5.1%	E205D (GAA→GAT)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,258	T→A	5.3%	I204F (ATC→TTC)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,261	G→C	5.4%	P203A (CCG→GCG)	PP_1459 ←	CBS domain‑containing protein
RA	1,665,262	C→A	5.4%	E202D (GAG→GAT)	PP_1459 ←	CBS domain‑containing protein
RA	1,684,272	T→C	9.3%	F284S (TTT→TCT)	PP_1478 →	xenobiotic reductase
RA	1,684,277	G→A	9.2%	E286K (GAG→AAG)	PP_1478 →	xenobiotic reductase
RA	1,691,959	C→G	7.1%	A19G (GCC→GGC)	PP_1488 →	methyl‑accepting chemotaxis transducer
RA	1,691,962	T→G	6.0%	I20S (ATC→AGC)	PP_1488 →	methyl‑accepting chemotaxis transducer
RA	1,691,970	C→G	6.2%	L23V (CTG→GTG)	PP_1488 →	methyl‑accepting chemotaxis transducer
RA	1,693,866	G→A	8.4%	C112Y (TGC→TAC)	PP_1489 →	CheW domain‑containing protein
RA	1,695,020	C→G	7.3%	A329G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,026	T→C	7.3%	L331P (CTG→CCG)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,029	C→G	7.3%	A332G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,698,114	T→C	10.4%	M716T (ATG→ACG)	PP_1492 →	two‑component system sensor histidine kinase/response regulator
RA	1,703,248	A→G	20.3%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	18.2%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	19.1%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,706,336	T→G	8.4%	M134R (ATG→AGG)	PP_1500 →	lipoprotein
RA	1,706,338	G→C	7.3%	A135P (GCC→CCC) ‡	PP_1500 →	lipoprotein
RA	1,706,340	C→A	6.8%	A135A (GCC→GCA) ‡	PP_1500 →	lipoprotein
RA	1,707,227	G→C	5.7%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,230	G→C	5.6%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,710,161	T→A	12.1%	A260A (GCT→GCA)	ppc →	phosphoenolpyruvate carboxylase
RA	1,712,951	T→A	12.6%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	13.2%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,744,260	G→C	9.4%	intergenic (‑49/+18)	PP_1541 ← / ← PP_1542	putative Methyltransferase/hypothetical protein
RA	1,744,262	G→C	9.0%	intergenic (‑51/+16)	PP_1541 ← / ← PP_1542	putative Methyltransferase/hypothetical protein
RA	1,744,264	G→C	9.5%	intergenic (‑53/+14)	PP_1541 ← / ← PP_1542	putative Methyltransferase/hypothetical protein
RA	1,744,887	T→C	6.7%	intergenic (‑13/+328)	PP_1542 ← / ← PP_1543	hypothetical protein/hypothetical protein
RA	1,744,888	T→A	6.7%	intergenic (‑14/+327)	PP_1542 ← / ← PP_1543	hypothetical protein/hypothetical protein
RA	1,744,889	G→A	6.7%	intergenic (‑15/+326)	PP_1542 ← / ← PP_1543	hypothetical protein/hypothetical protein
RA	1,751,792	C→G	7.0%	R67G (CGC→GGC)	PP_1552 →	replication protein
RA	1,751,795	A→C	7.1%	K68Q (AAG→CAG) ‡	PP_1552 →	replication protein
RA	1,751,796	A→T	7.1%	K68M (AAG→ATG) ‡	PP_1552 →	replication protein
RA	1,751,797	G→T	7.0%	K68N (AAG→AAT) ‡	PP_1552 →	replication protein
RA	1,751,800	C→G	7.1%	A69A (GCC→GCG)	PP_1552 →	replication protein
JC	1,780,067	Δ62 bp	25.9%	intergenic (+26/+19)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,786,022	T→A	7.7%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,023	T→A	7.7%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,024	T→A	7.7%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,669	A→T	9.8%	K167M (AAG→ATG)	tsf →	elongation factor Ts
RA	1,802,073	Δ1 bp	6.0%	coding (2057/3525 nt)	dnaEA →	DNA polymerase III subunit alpha
RA	1,802,079	A→T	5.8%	Y688F (TAC→TTC)	dnaEA →	DNA polymerase III subunit alpha
RA	1,802,082	A→T	5.5%	Q689L (CAG→CTG)	dnaEA →	DNA polymerase III subunit alpha
RA	1,802,085	A→T	5.9%	E690V (GAA→GTA)	dnaEA →	DNA polymerase III subunit alpha
RA	1,802,090:1	+A	6.0%	coding (2074/3525 nt)	dnaEA →	DNA polymerase III subunit alpha
RA	1,805,220	T→G	7.2%	L152V (TTA→GTA)	tilS →	tRNA lysidine(34) synthetase TilS
RA	1,808,090	G→T	6.6%	K47N (AAG→AAT)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,098	T→A	6.7%	I50N (ATC→AAC)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,103	T→C	5.4%	Y52H (TAC→CAC)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,839	A→G	11.3%	intergenic (+44/‑111)	kdsA‑I → / → eno	2‑dehydro‑3‑deoxyphosphooctonate aldolase/enolase
RA	1,808,840	G→A	11.1%	intergenic (+45/‑110)	kdsA‑I → / → eno	2‑dehydro‑3‑deoxyphosphooctonate aldolase/enolase
RA	1,808,841	T→C	10.5%	intergenic (+46/‑109)	kdsA‑I → / → eno	2‑dehydro‑3‑deoxyphosphooctonate aldolase/enolase
RA	1,808,842	C→T	10.6%	intergenic (+47/‑108)	kdsA‑I → / → eno	2‑dehydro‑3‑deoxyphosphooctonate aldolase/enolase
RA	1,810,335	T→G	10.0%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,810,336	C→A	9.8%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,811,634	T→A	12.4%	T262S (ACG→TCG)	PP_1615 ←	LysR family transcriptional regulator
RA	1,811,637	T→A	10.7%	N261Y (AAT→TAT)	PP_1615 ←	LysR family transcriptional regulator
RA	1,816,577	T→A	9.6%	V150E (GTG→GAG)	surE →	5'‑nucleotidase SurE
RA	1,819,789	Δ1 bp	6.9%	intergenic (+26/‑449)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,791	T→A	8.0%	intergenic (+28/‑447)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,795:1	+A	7.2%	intergenic (+32/‑443)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,796	T→C	7.2%	intergenic (+33/‑442)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,840,084	T→G	7.7%	intergenic (+16/+20)	PP_1646 → / ← PP_1647	thioredoxin/hypothetical protein
RA	1,859,462	A→T	6.8%	intergenic (‑54/+102)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,463	A→T	6.4%	intergenic (‑55/+101)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,871,421	A→G	6.8%	Q232R (CAG→CGG)	cobC →	adenosylcobinamide‑phosphate synthase subunit beta
RA	1,884,398	G→T	9.1%	intergenic (‑731/‑220)	PP_1691 ← / → PP_1692	hypothetical protein/hypothetical protein
RA	1,884,399	A→T	9.2%	intergenic (‑732/‑219)	PP_1691 ← / → PP_1692	hypothetical protein/hypothetical protein
RA	1,884,400	A→C	10.9%	intergenic (‑733/‑218)	PP_1691 ← / → PP_1692	hypothetical protein/hypothetical protein
RA	1,886,878	G→A	8.2%	A1132V (GCA→GTA)	PP_1695 ←	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
RA	1,887,296	G→A	7.4%	L993L (CTG→TTG)	PP_1695 ←	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
RA	1,897,203	G→T	7.6%	intergenic (‑56/+88)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,897,207	T→A	9.5%	intergenic (‑60/+84)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,897,211	A→C	6.4%	intergenic (‑64/+80)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,905,646	A→T	9.5%	H634L (CAC→CTC)	nirB →	nitrite reductase large subunit
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,938,839	C→T	6.2%	E73K (GAG→AAG)	PP_1738 ←	hypothetical protein
RA	1,938,844	T→C	6.1%	E71G (GAG→GGG)	PP_1738 ←	hypothetical protein
RA	1,941,690	A→T	5.3%	T78S (ACG→TCG)	betX →	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
RA	1,941,696	A→T	5.8%	K80* (AAG→TAG) ‡	betX →	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
RA	1,941,697	A→T	5.8%	K80M (AAG→ATG) ‡	betX →	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
RA	1,951,644	G→A	10.8%	P633S (CCG→TCG)	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,960,099	T→A	6.0%	intergenic (+50/‑78)	bolA → / → PP_1758	DNA‑binding transcriptional dual regulator/rhodanese‑like domain‑containing sulfurtransferase
RA	1,965,105	C→T	7.8%	F439F (TTC→TTT)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,965,106	A→G	7.5%	K440E (AAG→GAG)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,974,342	A→G	5.3%	N118D (AAC→GAC)	serC →	3‑phosphoserine/phosphohydroxythreonine aminotransferase
RA	1,975,985	A→G	7.3%	Y306C (TAT→TGT) ‡	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,975,986	T→A	7.1%	Y306* (TAT→TAA) ‡	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,975,987	C→T	7.1%	Q307* (CAG→TAG)	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,981,060	G→C	8.5%	*577S (TGA→TCA)	rpsA →	30S ribosomal protein S1
RA	1,987,438	T→C	10.1%	D231D (GAT→GAC)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,440	T→C	10.1%	L232S (TTG→TCG) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,441	G→A	10.3%	L232L (TTG→TTA) ‡	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,987,443	G→A	10.0%	S233N (AGT→AAT)	PP_1778 →	lipopolysaccharide ABC transporter permease
RA	1,988,845	A→G	11.7%	H32R (CAT→CGT)	PP_1780 →	mannosyltransferase
RA	1,993,602	G→T	7.5%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,603	C→G	7.6%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,604	A→C	7.7%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,996,011	C→G	14.2%	intergenic (‑257/+28)	PP_mr26 ← / ← rfbC	C4 ncRNA/dTDP‑4‑dehydrorhamnose 3,5‑epimerase
RA	1,996,014	C→G	14.3%	intergenic (‑260/+25)	PP_mr26 ← / ← rfbC	C4 ncRNA/dTDP‑4‑dehydrorhamnose 3,5‑epimerase
RA	2,007,239	T→C	6.5%	Q41Q (CAA→CAG)	PP_1790 ←	acylneuraminate cytidylyltransferase
RA	2,010,459	T→A	11.7%	E325D (GAA→GAT) ‡	PP_1792 ←	group 2 family glycosyl transferase
RA	2,010,460	T→A	12.0%	E325V (GAA→GTA) ‡	PP_1792 ←	group 2 family glycosyl transferase
RA	2,039,430	T→A	6.9%	K17M (AAG→ATG)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,049,303	G→T	7.4%	intergenic (‑32/+28)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,049,304	A→C	6.6%	intergenic (‑33/+27)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,059,856	G→A	8.1%	A258V (GCC→GTC)	PP_1836 ←	ZIP family metal transporter
RA	2,060,625	G→A	7.8%	P2S (CCA→TCA)	PP_1836 ←	ZIP family metal transporter
RA	2,063,201	G→A	11.3%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,221	T→G	11.6%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,067,826	T→C	6.6%	N77S (AAC→AGC)	plsC ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	2,082,900	G→C	8.3%	P112A (CCG→GCG)	PP_1861 ←	LysR family transcriptional regulator
RA	2,082,901	G→C	8.3%	A111A (GCC→GCG)	PP_1861 ←	LysR family transcriptional regulator
RA	2,082,906	G→C	7.7%	L110V (CTG→GTG)	PP_1861 ←	LysR family transcriptional regulator
RA	2,082,907	G→C	7.7%	H109Q (CAC→CAG)	PP_1861 ←	LysR family transcriptional regulator
RA	2,087,500	Δ1 bp	7.0%	intergenic (+313/+605)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,128,229	A→T	7.0%	A1200A (GCA→GCT)	PP_1887 →	hypothetical protein
RA	2,128,232	A→T	7.7%	Q1201H (CAA→CAT)	PP_1887 →	hypothetical protein
RA	2,128,233	A→T	7.7%	M1202L (ATG→TTG)	PP_1887 →	hypothetical protein
RA	2,128,236	A→T	9.2%	S1203C (AGC→TGC)	PP_1887 →	hypothetical protein
RA	2,130,253	G→T	9.1%	A649D (GCC→GAC)	fimD ←	type I pili subunit FimD
RA	2,130,258	C→G	8.9%	L647F (TTG→TTC)	fimD ←	type I pili subunit FimD
RA	2,130,263	A→C	8.9%	S646A (TCA→GCA)	fimD ←	type I pili subunit FimD
RA	2,130,266:1	+T	8.7%	coding (1933/2496 nt)	fimD ←	type I pili subunit FimD
RA	2,130,268	C→G	8.3%	S644T (AGC→ACC)	fimD ←	type I pili subunit FimD
RA	2,134,278	G→T	7.3%	intergenic (‑44/+25)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,160,521:1	+C	6.9%	coding (259/816 nt)	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,160,917	T→G	6.3%	C219G (TGC→GGC) ‡	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,160,918	G→C	6.2%	C219S (TGC→TCC) ‡	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,160,919	C→A	6.3%	C219* (TGC→TGA) ‡	pabC →	4‑amino‑4‑deoxychorismate lyase
RA	2,166,707	C→A	10.2%	intergenic (‑551/‑230)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,166,708	T→A	10.4%	intergenic (‑552/‑229)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,166,709	T→G	10.4%	intergenic (‑553/‑228)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,168,438	T→A	6.6%	intergenic (+338/+350)	PP_1921 → / ← PP_1922	hypothetical protein/hypothetical protein
RA	2,210,294	C→T	8.0%	S180F (TCC→TTC) ‡	PP_1953 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,210,295	C→G	7.9%	S180S (TCC→TCG) ‡	PP_1953 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,210,296	A→G	7.5%	K181E (AAG→GAG)	PP_1953 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,211,904	C→T	7.4%	D12D (GAC→GAT)	PP_1955 →	cytochrome P450 family protein
RA	2,211,907	C→A	7.4%	F13L (TTC→TTA)	PP_1955 →	cytochrome P450 family protein
RA	2,211,909	A→G	7.4%	N14S (AAT→AGT)	PP_1955 →	cytochrome P450 family protein
RA	2,223,369	G→C	9.3%	P393R (CCG→CGG)	PP_1962 ←	site‑specific recombinase
RA	2,223,378	G→C	9.8%	P390R (CCG→CGG)	PP_1962 ←	site‑specific recombinase
RA	2,235,837	G→C	6.8%	P316P (CCG→CCC)	uvrB →	uvrABC excinuclease protein B
RA	2,235,839	C→G	6.8%	A317G (GCC→GGC)	uvrB →	uvrABC excinuclease protein B
RA	2,235,841	G→C	7.1%	G318R (GGG→CGG)	uvrB →	uvrABC excinuclease protein B
RA	2,263,552	C→A	6.6%	A115A (GCC→GCA)	trpF →	N‑(5'‑phosphoribosyl)anthranilate isomerase
RA	2,264,120	C→T	100%	P24S (CCT→TCT)	accD →	acetyl‑CoA carboxylase carboxyltransferase subunit beta
RA	2,273,052	A→G	10.7%	intergenic (+17/+274)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,062	C→G	15.8%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,066	A→T	16.4%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,070	C→G	17.8%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,080	C→T	8.5%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,281,632	G→C	8.2%	G152R (GGC→CGC) ‡	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,281,633	G→C	8.2%	G152A (GGC→GCC) ‡	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,282,770	T→G	18.2%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,774	G→C	15.1%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,775	G→C	15.1%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,779	C→A	14.4%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,303,525	C→T	6.1%	T439T (ACG→ACA)	PP_2027 ←	hypothetical protein
RA	2,305,212	G→A	6.6%	L449L (CTG→TTG)	PP_2028 ←	TPR repeat‑containing protein
RA	2,305,213	T→C	6.4%	Q448Q (CAA→CAG)	PP_2028 ←	TPR repeat‑containing protein
RA	2,340,703	A→C	7.5%	intergenic (+37/‑78)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,707	G→A	7.2%	intergenic (+41/‑74)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,709	T→C	7.1%	intergenic (+43/‑72)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,340,713	G→T	8.9%	intergenic (+47/‑68)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,341,875	C→T	6.5%	G365G (GGC→GGT)	yraO →	transporter YraO
RA	2,344,669	C→A	6.7%	intergenic (‑20/+55)	PP_2061 ← / ← PP_2062	hypothetical protein/hypothetical protein
RA	2,344,682	G→T	7.1%	intergenic (‑33/+42)	PP_2061 ← / ← PP_2062	hypothetical protein/hypothetical protein
RA	2,351,974	T→C	14.3%	I431V (ATT→GTT)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,977	G→T	14.4%	R430S (CGC→AGC)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,978	C→T	14.7%	E429E (GAG→GAA)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,983	T→A	14.1%	S428C (AGT→TGT)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,988	A→G	14.1%	F426S (TTT→TCT) ‡	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,989	A→C	13.9%	F426V (TTT→GTT) ‡	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,992	G→A	13.9%	R425C (CGC→TGC)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,367,410	A→C	14.3%	Q76H (CAA→CAC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,367,411	G→T	14.3%	V77L (GTG→TTG)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,372,081	G→T	10.8%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,082	T→C	9.2%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,083	G→A	9.4%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,084	A→C	9.3%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,392,617	C→G	7.1%	I382M (ATC→ATG)	PP_2097 →	sensory box protein
RA	2,395,583	G→C	7.5%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,587	G→C	7.9%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,404,212	T→C	6.6%	L280P (CTG→CCG)	PP_2106 →	ammonium transporter
RA	2,412,904	G→C	13.0%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,412,905	G→C	13.1%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,421,944	G→C	5.5%	G78R (GGC→CGC) ‡	moeA →	molybdenum::molybdopterin ligase
RA	2,421,946	C→G	5.8%	G78G (GGC→GGG) ‡	moeA →	molybdenum::molybdopterin ligase
RA	2,421,948	A→T	5.8%	Q79L (CAG→CTG)	moeA →	molybdenum::molybdopterin ligase
RA	2,421,950	C→G	6.0%	P80A (CCG→GCG) ‡	moeA →	molybdenum::molybdopterin ligase
RA	2,421,952	G→C	5.9%	P80P (CCG→CCC) ‡	moeA →	molybdenum::molybdopterin ligase
RA	2,456,052	T→C	11.7%	L256P (CTG→CCG)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,456,055	C→G	12.3%	A257G (GCC→GGC)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,456,057	T→A	12.2%	C258S (TGC→AGC) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,456,059	C→G	12.1%	C258W (TGC→TGG) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,456,062	G→A	12.7%	P259P (CCG→CCA)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,468,261	G→C	5.6%	intergenic (‑25/+98)	PP_2161 ← / ← PP_2162	hypothetical protein/phosphonoacetaldehyde phosphonohydrolase‑like protein
RA	2,485,504	A→G	10.3%	K32K (AAA→AAG)	spuC‑I →	polyamine:pyruvate transaminase
RA	2,489,534	C→T	11.1%	A177A (GCC→GCT)	PP_2184 →	formate dehydrogenase subunit beta
RA	2,498,215	A→G	7.7%	H39R (CAC→CGC) ‡	PP_2193 →	ferric siderophore receptor
RA	2,498,216	C→T	7.7%	H39H (CAC→CAT) ‡	PP_2193 →	ferric siderophore receptor
RA	2,508,365	T→C	8.0%	I108V (ATC→GTC)	PP_2202 ←	membrane protein
RA	2,508,367	A→C	7.7%	L107R (CTG→CGG)	PP_2202 ←	membrane protein
RA	2,508,370	G→T	6.8%	T106K (ACG→AAG)	PP_2202 ←	membrane protein
RA	2,508,373	A→C	7.0%	L105R (CTT→CGT)	PP_2202 ←	membrane protein
RA	2,508,376	G→T	7.2%	P104Q (CCG→CAG)	PP_2202 ←	membrane protein
RA	2,511,675	G→A	12.3%	T19M (ACG→ATG) ‡	copA‑I ←	copper resistance protein A
RA	2,511,676	T→C	12.2%	T19A (ACG→GCG) ‡	copA‑I ←	copper resistance protein A
RA	2,517,009	G→A	9.5%	G124S (GGC→AGC)	PP_2210 →	LysR family transcriptional regulator
RA	2,517,013	A→T	9.1%	N125I (AAT→ATT)	PP_2210 →	LysR family transcriptional regulator
RA	2,517,017	T→C	9.3%	A126A (GCT→GCC)	PP_2210 →	LysR family transcriptional regulator
RA	2,521,844	C→T	8.0%	T1032M (ACG→ATG)	PP_2212 →	leucine‑rich repeat‑containing protein
RA	2,523,250	G→T	5.3%	intergenic (+55/‑29)	PP_2212 → / → PP_2213	leucine‑rich repeat‑containing protein/acyl‑CoA synthetase
RA	2,526,411	A→C	7.9%	K219Q (AAG→CAG) ‡	PP_2215 →	acetyl‑CoA acetyltransferase
RA	2,526,412	A→T	7.3%	K219M (AAG→ATG) ‡	PP_2215 →	acetyl‑CoA acetyltransferase
RA	2,526,413	G→T	7.7%	K219N (AAG→AAT) ‡	PP_2215 →	acetyl‑CoA acetyltransferase
RA	2,529,000	G→C	7.5%	intergenic (+127/‑280)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,529,001	G→C	8.9%	intergenic (+128/‑279)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,545,946	T→G	6.9%	I349M (ATT→ATG)	PP_2238 →	metallopeptidase
RA	2,545,948	G→A	7.0%	R350H (CGC→CAC)	PP_2238 →	metallopeptidase
RA	2,546,490	C→T	8.6%	P531S (CCG→TCG)	PP_2238 →	metallopeptidase
RA	2,546,494	A→C	8.0%	Q532P (CAG→CCG)	PP_2238 →	metallopeptidase
RA	2,546,496	A→T	8.1%	T533S (ACG→TCG) ‡	PP_2238 →	metallopeptidase
RA	2,546,498	G→T	8.6%	T533T (ACG→ACT) ‡	PP_2238 →	metallopeptidase
RA	2,546,502	A→G	8.3%	M535V (ATG→GTG)	PP_2238 →	metallopeptidase
RA	2,546,823	T→C	7.0%	intergenic (+22/+18)	PP_2238 → / ← PP_5504	metallopeptidase/hypothetical protein
RA	2,546,826	G→A	6.8%	intergenic (+25/+15)	PP_2238 → / ← PP_5504	metallopeptidase/hypothetical protein
RA	2,576,412	A→G	10.0%	E530G (GAG→GGG)	PP_2258 →	sensory box protein
RA	2,577,632	G→A	9.9%	Q255* (CAA→TAA)	PP_2259 ←	sigma‑54 dependent transcriptional regulator
RA	2,580,273	G→A	8.3%	V197I (GTC→ATC)	PP_2261 →	sugar ABC transporter ATP‑binding protein
RA	2,585,368	T→C	12.7%	T43A (ACC→GCC)	folD‑II ←	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,585,369	G→A	12.7%	G42G (GGC→GGT)	folD‑II ←	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,619,640	G→A	7.8%	W60* (TGG→TGA)	PP_2293 →	DNA maturase B
RA	2,628,386	A→C	8.2%	A16A (GCA→GCC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,690,895	A→C	7.6%	T79P (ACG→CCG)	PP_2357 →	type I pili subunit CsuB
RA	2,723,641	T→G	7.1%	S88R (AGC→CGC)	PP_2384 ←	membrane protein
RA	2,744,547	A→G	8.7%	E29G (GAG→GGG)	PP_2399 →	hypothetical protein
RA	2,745,175	G→T	11.4%	intergenic (+18/+17)	PP_2399 → / ← PP_2400	hypothetical protein/hypothetical protein
RA	2,745,176	C→G	11.1%	intergenic (+19/+16)	PP_2399 → / ← PP_2400	hypothetical protein/hypothetical protein
RA	2,745,177	A→C	11.0%	intergenic (+20/+15)	PP_2399 → / ← PP_2400	hypothetical protein/hypothetical protein
RA	2,747,971	G→A	7.7%	P179S (CCG→TCG)	PP_2403 ←	chemotaxis protein CheY
RA	2,747,975	G→T	7.7%	D177E (GAC→GAA)	PP_2403 ←	chemotaxis protein CheY
RA	2,747,978	G→C	7.5%	L176L (CTC→CTG) ‡	PP_2403 ←	chemotaxis protein CheY
RA	2,747,979	A→T	7.5%	L176H (CTC→CAC) ‡	PP_2403 ←	chemotaxis protein CheY
RA	2,747,980	G→C	7.4%	L176V (CTC→GTC) ‡	PP_2403 ←	chemotaxis protein CheY
RA	2,747,983	A→C	7.6%	F175V (TTC→GTC)	PP_2403 ←	chemotaxis protein CheY
RA	2,747,987	T→C	7.1%	R173R (CGA→CGG)	PP_2403 ←	chemotaxis protein CheY
RA	2,752,898	A→C	5.6%	Q152P (CAG→CCG)	czcB‑II →	cobalt‑zinc‑cadmium resistance protein
RA	2,753,883	A→C	6.8%	E70A (GAG→GCG)	czcA‑II →	cation efflux system protein
RA	2,753,885	A→G	6.9%	T71A (ACC→GCC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,886	C→T	6.6%	T71I (ACC→ATC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,888	G→T	6.6%	A72S (GCG→TCG)	czcA‑II →	cation efflux system protein
RA	2,762,710	T→A	10.4%	K62I (AAA→ATA)	PP_2416 ←	iron ABC transporter ATP‑binding protein
RA	2,799,171	A→G	11.7%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,177	C→T	16.9%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,180	A→G	17.0%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,186	C→T	16.3%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,804,588	T→C	7.9%	L134P (CTG→CCG)	rbsR →	DNA‑binding transcriptional repressor
RA	2,808,544	A→C	10.0%	noncoding (416/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,545	C→T	10.4%	noncoding (415/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,546	A→T	10.3%	noncoding (414/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,547	A→G	10.3%	noncoding (413/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,821,960	C→T	13.7%	T80M (ACG→ATG)	PP_2475 →	TetR family transcriptional regulator
RA	2,829,698	C→T	7.4%	A101V (GCC→GTC)	PP_2482 →	molybdenum cofactor biosynthesis protein A
RA	2,852,397	T→A	6.0%	Q312L (CAG→CTG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,865,753	C→T	6.8%	E342K (GAA→AAA)	glllA ←	gallate dioxygenase
RA	2,873,648	T→C	7.7%	V143A (GTG→GCG)	cigR →	membrane protein
RA	2,880,316	T→C	6.4%	V53A (GTG→GCG)	PP_2535 →	transport protein
RA	2,880,319	T→C	6.4%	L54P (CTG→CCG)	PP_2535 →	transport protein
RA	2,907,691	T→A	10.4%	Q335L (CAG→CTG)	hasE ←	secretion metalloprotease
RA	2,907,694	A→C	10.0%	L334R (CTG→CGG)	hasE ←	secretion metalloprotease
RA	2,907,697	G→T	10.0%	P333Q (CCG→CAG)	hasE ←	secretion metalloprotease
RA	2,907,700	T→A	9.8%	Q332L (CAG→CTG)	hasE ←	secretion metalloprotease
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,922,538	C→T	8.8%	R905R (AGG→AGA)	PP_2563 ←	antibiotic biosynthesis protein
RA	2,922,543	G→T	9.9%	R904S (CGC→AGC)	PP_2563 ←	antibiotic biosynthesis protein
RA	2,923,326	C→A	8.5%	A643S (GCG→TCG)	PP_2563 ←	antibiotic biosynthesis protein
RA	2,930,198	A→G	7.7%	W1302R (TGG→CGG)	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,941,327	T→G	10.9%	S187A (TCG→GCG)	PP_2574 →	LysR family transcriptional regulator
RA	2,941,331	T→A	11.3%	L188Q (CTG→CAG)	PP_2574 →	LysR family transcriptional regulator
RA	2,941,335	C→A	11.7%	R189R (CGC→CGA)	PP_2574 →	LysR family transcriptional regulator
RA	2,941,342	T→G	11.4%	C192G (TGC→GGC)	PP_2574 →	LysR family transcriptional regulator
RA	2,949,794	A→T	7.4%	intergenic (+59/+54)	PP_2583 → / ← oguA	acetyltransferase/8‑oxoguanine deaminase
RA	2,949,795	A→T	7.4%	intergenic (+60/+53)	PP_2583 → / ← oguA	acetyltransferase/8‑oxoguanine deaminase
RA	2,949,796	A→T	7.4%	intergenic (+61/+52)	PP_2583 → / ← oguA	acetyltransferase/8‑oxoguanine deaminase
RA	2,951,334	G→C	16.1%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	16.1%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	15.7%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	17.1%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
JC	2,957,081	Δ84 bp	19.4%	intergenic (+36/‑77)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
JC	2,958,772	Δ61 bp	14.0%	intergenic (+38/+44)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,986,779	G→A	9.1%	S540S (AGC→AGT)	PP_2612 ←	membrane protein
RA	3,006,468	T→G	14.5%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,479	C→A	13.4%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,007,079	T→C	10.4%	intergenic (+39/+39)	PP_2627 → / ← PP_2628	membrane protein/ABC transporter ATP‑binding protein
RA	3,007,080	C→G	10.0%	intergenic (+40/+38)	PP_2627 → / ← PP_2628	membrane protein/ABC transporter ATP‑binding protein
RA	3,007,081	G→A	10.0%	intergenic (+41/+37)	PP_2627 → / ← PP_2628	membrane protein/ABC transporter ATP‑binding protein
RA	3,027,386	C→T	8.5%	R251W (CGG→TGG)	PP_2642 →	GntR family transcriptional regulator
RA	3,037,488	T→C	10.7%	A33A (GCA→GCG)	PP_2649 ←	LysR family transcriptional regulator
RA	3,048,619	C→T	7.7%	intergenic (+74/‑222)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,057,280	G→T	10.6%	A23D (GCC→GAC)	PP_2669 ←	outer membrane protein
RA	3,057,282	C→G	10.7%	L22L (CTG→CTC) ‡	PP_2669 ←	outer membrane protein
RA	3,057,283	A→G	10.3%	L22P (CTG→CCG) ‡	PP_2669 ←	outer membrane protein
RA	3,057,289	A→C	13.3%	L20R (CTG→CGG) ‡	PP_2669 ←	outer membrane protein
RA	3,057,290	G→T	13.3%	L20M (CTG→ATG) ‡	PP_2669 ←	outer membrane protein
RA	3,057,296	C→T	10.9%	G18S (GGC→AGC)	PP_2669 ←	outer membrane protein
RA	3,057,297	C→G	13.8%	S17S (TCG→TCC) ‡	PP_2669 ←	outer membrane protein
RA	3,057,299	A→C	13.3%	S17A (TCG→GCG) ‡	PP_2669 ←	outer membrane protein
RA	3,060,024	C→G	16.1%	A10G (GCC→GGC)	exaE →	transcriptional regulator ExaE
RA	3,065,550	G→C	9.5%	G164R (GGG→CGG) ‡	PP_2677 →	hypothetical protein
RA	3,065,551	G→C	9.1%	G164A (GGG→GCG) ‡	PP_2677 →	hypothetical protein
RA	3,065,552	G→C	9.5%	G164G (GGG→GGC) ‡	PP_2677 →	hypothetical protein
RA	3,074,847	T→C	8.0%	L151L (CTT→CTC)	PP_2684 →	membrane protein
RA	3,076,092	A→G	11.0%	intergenic (‑40/+34)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,094	T→G	18.8%	intergenic (‑42/+32)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,095	C→A	9.6%	intergenic (‑43/+31)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,097	C→T	9.7%	intergenic (‑45/+29)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,089,271	C→A	9.8%	M314I (ATG→ATT)	metE ←	5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase
RA	3,111,743	G→A	11.4%	H180Y (CAT→TAT)	PP_2726 ←	membrane protein
RA	3,118,279	G→T	7.4%	H101Q (CAC→CAA)	cfa ←	cyclopropane‑fatty‑acyl‑phospholipid synthase
RA	3,121,594	C→G	11.0%	G90A (GGC→GCC)	PP_2738 ←	putative Transcriptional regulator
RA	3,139,457	A→G	8.1%	Q4R (CAG→CGG)	sfnB →	SfnB family sulfur acquisition oxidoreductase
RA	3,165,233	C→T	8.1%	S248S (AGC→AGT)	PP_2779 →	putative Beta‑ketoacyl synthase
RA	3,179,341	G→A	100%	L445L (CTG→TTG)	PP_2790 ←	sigma‑54 dependent sensory box protein
RA	3,216,560	C→G	7.5%	D825E (GAC→GAG)	mexD →	multidrug RND transporter MexD
RA	3,216,563	C→G	7.5%	A826A (GCC→GCG)	mexD →	multidrug RND transporter MexD
RA	3,235,080	G→C	10.2%	G59R (GGC→CGC) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,235,082	C→G	8.9%	G59G (GGC→GGG) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,235,084	A→T	8.6%	Q60L (CAG→CTG)	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,235,086	C→G	8.6%	P61A (CCG→GCG) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,235,088	G→C	8.6%	P61P (CCG→CCC) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,255,843	C→T	11.5%	intergenic (‑106/+30)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,255,846	T→G	11.1%	intergenic (‑109/+27)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,256,978	C→T	8.6%	R59H (CGC→CAC)	PP_2853 ←	hypothetical protein
RA	3,261,698	T→A	11.8%	D143V (GAC→GTC)	PP_2859 ←	hypothetical protein
RA	3,266,095	A→T	16.6%	intergenic (+12/+47)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,102	T→C	21.2%	intergenic (+19/+40)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,103	C→T	21.2%	intergenic (+20/+39)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,111	G→C	22.1%	intergenic (+28/+31)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,113	A→T	23.1%	intergenic (+30/+29)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,114	A→T	23.3%	intergenic (+31/+28)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,116	G→C	22.6%	intergenic (+33/+26)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,124	A→G	15.9%	intergenic (+41/+18)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,125	G→A	15.9%	intergenic (+42/+17)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,132	A→T	14.0%	intergenic (+49/+10)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,294,502	T→A	10.5%	E155V (GAA→GTA)	PP_2894 ←	hypothetical protein
RA	3,298,028	G→C	10.3%	G82A (GGT→GCT)	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,298,030	G→C	10.4%	E83Q (GAG→CAG) ‡	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,298,032	G→C	10.4%	E83D (GAG→GAC) ‡	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,312,687	G→T	8.8%	intergenic (+28/‑134)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,688	T→A	9.2%	intergenic (+29/‑133)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,689	T→A	9.3%	intergenic (+30/‑132)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,690	A→C	9.0%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,213	C→G	7.4%	P608P (CCG→CCC)	treSA ←	trehalose synthase A
RA	3,326,932	G→C	6.1%	A425G (GCC→GGC)	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,326,938	T→G	6.7%	H423P (CAC→CCC) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,326,939	G→C	6.7%	H423D (CAC→GAC) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,328,155	C→G	12.5%	V17V (GTG→GTC) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,328,156	A→T	11.9%	V17E (GTG→GAG) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,328,157	C→G	12.1%	V17L (GTG→CTG) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,336,884	C→T	8.3%	H30Y (CAC→TAC)	PP_2934 →	hypothetical protein
RA	3,344,346	C→G	11.2%	Q261H (CAG→CAC)	PP_2941 ←	hypothetical protein
RA	3,380,705	T→C	7.0%	L126P (CTT→CCT)	tnpT‑I →	cointegrate resolution protein T
RA	3,380,707	C→G	7.0%	Q127E (CAG→GAG) ‡	tnpT‑I →	cointegrate resolution protein T
RA	3,380,709	G→A	7.2%	Q127Q (CAG→CAA) ‡	tnpT‑I →	cointegrate resolution protein T
RA	3,391,520	T→C	8.5%	W244R (TGG→CGG) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,391,521	G→C	8.3%	W244S (TGG→TCG) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,391,522	G→A	8.5%	W244* (TGG→TGA) ‡	PP_2994 →	FMN‑binding oxidoreductase
RA	3,393,647	C→G	7.0%	A254P (GCC→CCC)	PP_2997 ←	protein CnmA
RA	3,393,652	G→C	7.3%	T252R (ACA→AGA) ‡	PP_2997 ←	protein CnmA
RA	3,393,653	T→A	7.3%	T252S (ACA→TCA) ‡	PP_2997 ←	protein CnmA
RA	3,393,657	C→G	7.4%	G250G (GGG→GGC)	PP_2997 ←	protein CnmA
RA	3,412,901	C→T	8.3%	intergenic (‑77/‑90)	PP_3025 ← / → PP_3026	LysE family transporter/recombinase
RA	3,414,942	C→T	11.9%	A56T (GCA→ACA)	PP_3027 ←	hypothetical protein
RA	3,422,207	A→G	7.2%	K122R (AAG→AGG)	PP_3038 →	TraC domain‑containing protein
RA	3,426,491	A→T	6.0%	D147V (GAC→GTC) ‡	PP_3042 →	terminase large subunit
RA	3,426,492	C→G	7.2%	D147E (GAC→GAG) ‡	PP_3042 →	terminase large subunit
RA	3,430,159	C→T	8.7%	S126L (TCG→TTG) ‡	PP_3045 →	ATP‑dependent protease ClpP
RA	3,430,160	G→C	8.5%	S126S (TCG→TCC) ‡	PP_3045 →	ATP‑dependent protease ClpP
RA	3,430,161	A→G	8.9%	N127D (AAT→GAT)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,444,149	C→G	8.5%	P970A (CCC→GCC)	PP_3062 →	tail length determination protein
RA	3,444,153	C→T	8.2%	A971V (GCC→GTC)	PP_3062 →	tail length determination protein
RA	3,444,158	A→G	8.2%	T973A (ACG→GCG)	PP_3062 →	tail length determination protein
RA	3,444,162	C→G	7.5%	A974G (GCC→GGC)	PP_3062 →	tail length determination protein
RA	3,456,120	C→A	14.3%	V115L (GTG→TTG)	eco ←	ecotin
RA	3,456,125	G→A	14.2%	A113V (GCC→GTC)	eco ←	ecotin
RA	3,456,128	T→G	13.8%	E112A (GAG→GCG) ‡	eco ←	ecotin
RA	3,456,129	C→A	13.3%	E112* (GAG→TAG) ‡	eco ←	ecotin
RA	3,456,132	T→C	13.7%	T111A (ACC→GCC)	eco ←	ecotin
RA	3,456,137	T→G	13.8%	K109T (AAG→ACG)	eco ←	ecotin
RA	3,457,228	T→C	6.2%	I21V (ATC→GTC)	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,491,225	G→A	9.1%	L56F (CTC→TTC)	clpV ←	protein ClpV1
RA	3,494,413	A→G	6.9%	L91P (CTG→CCG)	PP_3098 ←	hypothetical protein
RA	3,495,831	T→A	9.5%	K128M (AAG→ATG)	puuD ←	uricase/urate oxidase
RA	3,518,499	A→G	10.2%	E42E (GAA→GAG)	PP_5579 →	hypothetical protein
RA	3,536,580	T→C	6.4%	V73A (GTG→GCG)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,536,583	G→T	6.4%	R74L (CGC→CTC)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,536,585	C→G	8.9%	R75G (CGT→GGT)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,536,590	C→G	6.6%	T76T (ACC→ACG)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,536,592	A→C	6.5%	E77A (GAG→GCG)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,536,595	G→A	6.5%	R78H (CGC→CAC)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,552,678	C→T	6.5%	A112V (GCC→GTC)	PP_3137 →	group 2 family glycosyl transferase
RA	3,559,812	G→A	7.5%	G96G (GGC→GGT)	PP_3143 ←	LysR family transcriptional regulator
RA	3,559,861	C→T	7.3%	G80D (GGC→GAC)	PP_3143 ←	LysR family transcriptional regulator
RA	3,579,072	T→A	6.0%	F142L (TTT→TTA)	PP_5589 →	rhs repeat‑associated core domain‑containing protein
RA	3,593,761	C→G	5.8%	A266G (GCC→GGC)	PP_3171 →	hypothetical protein
RA	3,620,299	C→A	7.7%	A18A (GCG→GCT)	PP_3190 ←	ornithine cyclodeaminase/mu‑crystallin family protein
RA	3,630,703	G→T	7.7%	G442C (GGC→TGC)	PP_3200 →	hypothetical protein
RA	3,638,813	G→C	9.7%	R270P (CGC→CCC)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,816	G→C	8.3%	S271T (AGC→ACC) ‡	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,817	C→G	8.3%	S271R (AGC→AGG) ‡	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,818	G→C	8.2%	V272L (GTG→CTG)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,821	G→C	8.1%	G273R (GGC→CGC)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,640,493	C→T	8.0%	R175* (CGA→TGA)	PP_3207 →	cyclase
RA	3,641,817	T→A	9.4%	Q463L (CAG→CTG)	PP_3209 ←	isoxanthopterin deaminase
RA	3,641,822	T→C	7.4%	A461A (GCA→GCG)	PP_3209 ←	isoxanthopterin deaminase
RA	3,648,455	A→T	6.7%	I247F (ATC→TTC)	PP_3214 →	hypothetical protein
RA	3,671,562	C→T	7.4%	P123S (CCG→TCG)	PP_3234 →	HSP20 family heat shock protein
RA	3,674,531	C→T	7.4%	V9I (GTT→ATT)	PP_3238 ←	transcriptional regulator PyrR
RA	3,711,476	G→C	6.8%	A72G (GCG→GGG)	paaC ←	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
RA	3,717,845	T→G	15.8%	N250H (AAC→CAC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,717,846	C→A	15.8%	V249V (GTG→GTT)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,088	C→G	11.2%	E169Q (GAG→CAG)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,722,804	T→A	6.9%	Y21N (TAT→AAT) ‡	PP_3288 →	universal stress protein family protein
RA	3,722,805	A→T	6.9%	Y21F (TAT→TTT) ‡	PP_3288 →	universal stress protein family protein
RA	3,722,806	T→A	6.9%	Y21* (TAT→TAA) ‡	PP_3288 →	universal stress protein family protein
RA	3,727,120:1	+T	10.5%	coding (333/645 nt)	PP_3292 →	membrane protein
RA	3,727,125	T→A	10.0%	L113Q (CTG→CAG)	PP_3292 →	membrane protein
RA	3,727,128	T→A	10.0%	L114Q (CTG→CAG)	PP_3292 →	membrane protein
RA	3,744,610	A→C	7.8%	A298A (GCA→GCC)	paoB →	aromatic aldehyde dehydrogenase FAD‑binding subunit
RA	3,747,271	T→A	6.1%	K497M (AAG→ATG)	kefB‑II ←	glutathione‑regulated potassium/H+ antiporter
RA	3,754,839	G→A	6.8%	A94T (GCA→ACA)	PP_3319 →	GGDEF domain‑containing sensory box protein
RA	3,762,866	T→C	5.3%	Y37H (TAC→CAC)	PP_3326 →	hypothetical protein
RA	3,762,926	T→C	8.2%	F57L (TTC→CTC)	PP_3326 →	hypothetical protein
RA	3,762,930:1	+C	9.1%	coding (173/723 nt)	PP_3326 →	hypothetical protein
RA	3,762,942	A→T	9.4%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,768,947	G→T	9.5%	L178L (CTG→CTT)	PP_3330 →	ferric siderophore receptor
RA	3,782,990:1	+A	7.0%	coding (81/771 nt)	nikD →	nickel ABC transporter ATP‑binding protein
RA	3,782,993	G→T	6.9%	L28L (CTG→CTT)	nikD →	nickel ABC transporter ATP‑binding protein
RA	3,783,004	A→C	7.1%	E32A (GAA→GCA)	nikD →	nickel ABC transporter ATP‑binding protein
RA	3,783,007	Δ1 bp	7.1%	coding (98/771 nt)	nikD →	nickel ABC transporter ATP‑binding protein
RA	3,785,761	C→T	7.5%	A319V (GCC→GTC)	PP_3348 →	GGDEF domain‑containing protein
RA	3,788,561	C→T	7.2%	S25N (AGC→AAC)	PP_3350 ←	hypothetical protein
RA	3,788,632	C→G	100%	M1M (ATG→ATC) †	PP_3350 ←	hypothetical protein
RA	3,792,941	T→A	6.3%	Y126F (TAC→TTC)	PP_3354 ←	acyl‑CoA dehydrogenase
RA	3,793,800	A→G	8.4%	G241G (GGT→GGC) ‡	PP_3355 ←	beta‑ketothiolase
RA	3,793,801	C→G	8.5%	G241A (GGT→GCT) ‡	PP_3355 ←	beta‑ketothiolase
RA	3,793,802	C→T	8.4%	G241S (GGT→AGT) ‡	PP_3355 ←	beta‑ketothiolase
RA	3,806,742	T→C	7.1%	L453S (TTG→TCG) ‡	PP_3364 →	two‑component system response regulator
RA	3,806,743	G→A	7.1%	L453L (TTG→TTA) ‡	PP_3364 →	two‑component system response regulator
RA	3,806,748	A→G	7.1%	D455G (GAC→GGC)	PP_3364 →	two‑component system response regulator
RA	3,806,754	T→C	7.5%	L457P (CTG→CCG) ‡	PP_3364 →	two‑component system response regulator
RA	3,806,755	G→A	7.5%	L457L (CTG→CTA) ‡	PP_3364 →	two‑component system response regulator
RA	3,806,760	C→G	8.0%	P459R (CCC→CGC)	PP_3364 →	two‑component system response regulator
RA	3,844,193	C→T	7.7%	D163N (GAC→AAC)	PP_3393 ←	CAIB/BAIF family protein
RA	3,844,924	A→T	8.9%	L237Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,928	C→G	8.7%	G236R (GGC→CGC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,929	C→G	8.7%	A235A (GCG→GCC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,933	A→T	8.3%	L234Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,853,765	C→T	11.1%	intergenic (+48/+34)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,771	T→C	11.3%	intergenic (+54/+28)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,772	G→A	12.0%	intergenic (+55/+27)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,778	A→G	12.0%	intergenic (+61/+21)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,880,630	A→C	6.9%	D822A (GAC→GCC)	mexF →	multidrug RND transporter MexF
RA	3,931,891	G→T	6.4%	A529D (GCC→GAC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,931,895	A→C	6.3%	F528V (TTC→GTC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,931,902	G→T	6.2%	D525E (GAC→GAA)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,931,906	A→C	6.6%	I524S (ATC→AGC) ‡	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,931,907	T→C	6.5%	I524V (ATC→GTC) ‡	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,942,940	A→G	8.7%	V318A (GTG→GCG) ‡	PP_3478 ←	secretion protein
RA	3,942,941	C→A	8.3%	V318L (GTG→TTG) ‡	PP_3478 ←	secretion protein
RA	3,942,943	G→A	8.8%	A317V (GCG→GTG)	PP_3478 ←	secretion protein
RA	3,942,948	C→G	9.1%	S315S (TCG→TCC)	PP_3478 ←	secretion protein
RA	3,942,953	T→C	9.2%	T314A (ACG→GCG)	PP_3478 ←	secretion protein
RA	3,942,955	T→G	9.2%	D313A (GAC→GCC) ‡	PP_3478 ←	secretion protein
RA	3,942,956	C→T	9.8%	D313N (GAC→AAC) ‡	PP_3478 ←	secretion protein
RA	3,943,632	G→T	6.0%	R87R (CGC→CGA)	PP_3478 ←	secretion protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,953,938	Δ1 bp	6.1%	coding (585/1977 nt)	PP_5606 ←	YVTN beta‑propeller repeat‑containing protein
RA	3,958,183	A→T	12.5%	L734L (CTT→CTA) ‡	mnxG ←	manganese‑oxidizing multicopper oxidase
RA	3,958,184	A→T	13.9%	L734H (CTT→CAT) ‡	mnxG ←	manganese‑oxidizing multicopper oxidase
RA	3,959,653	G→A	8.0%	L244L (CTC→CTT)	mnxG ←	manganese‑oxidizing multicopper oxidase
RA	3,981,977	A→T	8.7%	noncoding (28/207 nt)	PP_mr43 ←	Cobalamin regulatory region
RA	4,013,586	T→C	10.6%	noncoding (343/385 nt)	PP_mr44 →	CrcZ ncRNA
RA	4,013,587	T→G	12.7%	noncoding (344/385 nt)	PP_mr44 →	CrcZ ncRNA
RA	4,013,588	C→A	10.7%	noncoding (345/385 nt)	PP_mr44 →	CrcZ ncRNA
RA	4,013,589	G→A	10.6%	noncoding (346/385 nt)	PP_mr44 →	CrcZ ncRNA
RA	4,024,150	G→A	8.1%	P120L (CCG→CTG)	emrB ←	multidrug transporter permease
RA	4,027,684:1	+G	7.8%	coding (746/1407 nt)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,027,684:2	+C	7.8%	coding (746/1407 nt)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,027,687	C→G	9.1%	G248A (GGC→GCC)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,027,691	A→C	8.5%	S247A (TCG→GCG)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,027,694	C→G	8.7%	A246P (GCC→CCC)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,027,697	Δ1 bp	8.0%	coding (733/1407 nt)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,027,698	Δ1 bp	7.8%	coding (732/1407 nt)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,033,219	C→T	9.5%	T286I (ACC→ATC)	PP_3555 →	transmembrane sensor
RA	4,042,321	C→A	6.9%	L137I (CTC→ATC) ‡	PP_3563 →	hypothetical protein
RA	4,042,322	T→G	6.9%	L137R (CTC→CGC) ‡	PP_3563 →	hypothetical protein
RA	4,049,907	A→G	13.8%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,910	C→G	11.6%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,913	C→T	11.6%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,050,675	C→T	9.6%	G236G (GGC→GGT)	oprB‑III →	carbohydrate‑selective porin
RA	4,050,679	G→A	9.4%	V238M (GTG→ATG) ‡	oprB‑III →	carbohydrate‑selective porin
RA	4,050,680	T→C	9.5%	V238A (GTG→GCG) ‡	oprB‑III →	carbohydrate‑selective porin
RA	4,050,684	A→G	9.3%	V239V (GTA→GTG)	oprB‑III →	carbohydrate‑selective porin
RA	4,051,954	G→A	9.2%	I167I (ATC→ATT)	PP_3571 ←	acetylornithine deacetylase
RA	4,057,368:1	+G	7.3%	coding (294/2406 nt)	PP_3575 ←	ferric siderophore receptor
RA	4,057,378	Δ1 bp	7.3%	coding (284/2406 nt)	PP_3575 ←	ferric siderophore receptor
RA	4,080,919	A→T	7.3%	intergenic (‑143/+20)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,080,920	A→T	7.7%	intergenic (‑144/+19)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,082,777	A→T	5.4%	N241I (AAT→ATT)	PP_3592 →	RpiR family transcriptional regulator
RA	4,087,541	C→A	8.1%	intergenic (+190/‑236)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,098,301	A→G	8.1%	L130P (CTG→CCG)	qor‑II ←	quinone oxidoreductase
RA	4,133,977	T→A	10.3%	A351A (GCA→GCT) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,133,979	C→G	10.3%	A351P (GCA→CCA) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,133,981	T→A	10.3%	Q350L (CAG→CTG)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,138,014	T→C	6.6%	N58D (AAC→GAC)	PP_3641 ←	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,138,021	G→T	6.7%	F55L (TTC→TTA) ‡	PP_3641 ←	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,138,022	A→T	6.7%	F55Y (TTC→TAC) ‡	PP_3641 ←	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,138,023	A→C	6.8%	F55V (TTC→GTC) ‡	PP_3641 ←	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,138,575	A→C	13.9%	D25A (GAC→GCC)	PP_3643 →	oxidoreductase
RA	4,138,583	G→C	14.3%	G28R (GGC→CGC) ‡	PP_3643 →	oxidoreductase
RA	4,138,585	C→A	16.7%	G28G (GGC→GGA) ‡	PP_3643 →	oxidoreductase
RA	4,138,586	T→G	17.2%	S29A (TCG→GCG) ‡	PP_3643 →	oxidoreductase
RA	4,138,588	G→C	16.5%	S29S (TCG→TCC) ‡	PP_3643 →	oxidoreductase
RA	4,138,596	G→T	9.5%	G32V (GGC→GTC)	PP_3643 →	oxidoreductase
RA	4,141,168	T→A	8.0%	L44Q (CTG→CAG)	PP_3645 →	L‑proline amide hydrolase
RA	4,142,396	A→G	6.1%	K177E (AAA→GAA) ‡	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,142,397	A→G	6.3%	K177R (AAA→AGA) ‡	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,142,400	C→G	6.2%	P178R (CCG→CGG)	PP_3646 →	aldehyde dehydrogenase family protein
RA	4,143,882	T→A	11.5%	intergenic (+35/‑88)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,143,883	T→A	11.3%	intergenic (+36/‑87)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,155,974	C→T	6.5%	A273T (GCT→ACT)	PP_3659 ←	transcriptional regulator, AraC family
RA	4,170,180	T→G	15.6%	intergenic (‑288/‑99)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,170,182	A→T	10.0%	intergenic (‑290/‑97)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,170,183	A→T	10.1%	intergenic (‑291/‑96)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,170,185	C→A	11.2%	intergenic (‑293/‑94)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,196,292	G→A	7.5%	intergenic (+134/+235)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,196,293	G→C	7.7%	intergenic (+135/+234)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,196,302	T→G	7.2%	intergenic (+144/+225)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,201,295	C→A	6.0%	G2161C (GGT→TGT)	PP_3691 ←	DNA helicase‑related protein
RA	4,204,033	G→T	8.5%	A1248E (GCG→GAG)	PP_3691 ←	DNA helicase‑related protein
RA	4,205,893	A→G	8.5%	M628T (ATG→ACG)	PP_3691 ←	DNA helicase‑related protein
RA	4,215,414	G→C	6.7%	F543L (TTC→TTG)	PP_3697 ←	hypothetical protein
RA	4,244,983	T→G	7.5%	D13A (GAC→GCC)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,244,986	C→A	7.6%	G12V (GGC→GTC)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,246,185	C→G	14.1%	M30I (ATG→ATC)	alr ←	alanine racemase
RA	4,246,188	C→G	14.0%	S29S (TCG→TCC)	alr ←	alanine racemase
RA	4,264,912	T→A	13.8%	L42Q (CTG→CAG)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,264,918	A→T	11.2%	D44V (GAC→GTC)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,266,162	C→A	7.7%	V99V (GTG→GTT)	PP_3738 ←	transcriptional regulator VanR
RA	4,273,036	C→T	9.1%	intergenic (+12/+49)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,044	T→C	10.5%	intergenic (+20/+41)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,050	G→T	10.0%	intergenic (+26/+35)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,053	G→A	9.7%	intergenic (+29/+32)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,055	T→C	9.4%	intergenic (+31/+30)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,058	A→C	12.8%	intergenic (+34/+27)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,273,064	G→A	9.5%	intergenic (+40/+21)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,282,352	C→A	9.2%	R293L (CGC→CTC)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,355	A→G	10.0%	L292P (CTG→CCG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,358	C→T	10.0%	R291Q (CGG→CAG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,361	T→G	9.8%	E290A (GAG→GCG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,293,967	C→G	7.0%	D13H (GAC→CAC)	PP_3763 ←	precorrin‑6A synthase
RA	4,321,473	G→A	8.0%	A98T (GCT→ACT)	PP_5629 →	protease/amidase
RA	4,331,580	G→T	6.7%	G94C (GGC→TGC)	PP_3803 →	cation ABC transporter permease
RA	4,338,493	A→T	9.2%	intergenic (+113/+29)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,494	A→T	8.1%	intergenic (+114/+28)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,344,302	A→T	15.5%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,304	C→T	15.3%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,305	A→G	15.9%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,310	C→G	15.7%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,313	C→G	17.4%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,318	C→T	15.2%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,319	A→G	15.0%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,321	A→T	15.2%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,348,705	A→G	58.4%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,360,284	Δ1 bp	9.2%	coding (838/1161 nt)	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,360,289	G→C	9.6%	A278G (GCC→GGC)	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,360,293:1	+G	9.3%	coding (829/1161 nt)	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,364,887	C→T	7.7%	A85T (GCC→ACC)	PP_3841 ←	MerR family transcriptional regulator
RA	4,364,891	G→C	5.9%	V83V (GTC→GTG)	PP_3841 ←	MerR family transcriptional regulator
RA	4,380,027	C→T	7.8%	A167T (GCA→ACA)	PP_3856 ←	hypothetical protein
RA	4,382,881	T→C	6.8%	intergenic (‑92/+170)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,382,882	G→C	6.5%	intergenic (‑93/+169)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,382,883	G→A	6.9%	intergenic (‑94/+168)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,399,566	T→G	8.9%	R108R (CGA→CGC)	PP_3878 ←	minor capsid protein C
RA	4,406,760	C→A	8.0%	G362C (GGC→TGC)	PP_3889 ←	putative Phage integrase
RA	4,425,139	G→C	6.7%	intergenic (‑197/‑603)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,141	G→C	6.8%	intergenic (‑199/‑601)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,143	G→C	6.9%	intergenic (‑201/‑599)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,153	C→T	6.9%	intergenic (‑211/‑589)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,428,461	T→G	7.1%	D102A (GAC→GCC)	sohB ←	peptidase
RA	4,428,464	C→A	9.2%	G101V (GGC→GTC)	sohB ←	peptidase
RA	4,433,325	C→T	6.8%	E40E (GAG→GAA)	PP_5648 ←	hypothetical protein
RA	4,433,326:1	+C	6.8%	coding (119/351 nt)	PP_5648 ←	hypothetical protein
RA	4,433,326:2	+A	6.8%	coding (119/351 nt)	PP_5648 ←	hypothetical protein
RA	4,433,326:3	+G	6.8%	coding (119/351 nt)	PP_5648 ←	hypothetical protein
RA	4,439,786	C→G	5.0%	L232L (CTC→CTG)	PP_3934 →	LysR family transcriptional regulator
RA	4,466,113	C→T	8.1%	intergenic (‑159/‑145)	betT‑III ← / → nhaA‑II	choline/carnitine/betaine transporter BetTC/Na(+)/H(+) antiporter NhaA
RA	4,474,324	A→G	8.3%	N404N (AAT→AAC)	PP_3964 ←	transposase
RA	4,476,301	A→G	7.1%	intergenic (‑50/‑126)	PP_3966 ← / → PP_3967	transposase/MutT/nudix family protein
RA	4,476,303	C→G	6.9%	intergenic (‑52/‑124)	PP_3966 ← / → PP_3967	transposase/MutT/nudix family protein
RA	4,488,991	A→G	12.0%	intergenic (+344/+227)	PP_3981 → / ← PP_3982	transposase/hypothetical protein
RA	4,488,992	C→G	11.9%	intergenic (+345/+226)	PP_3981 → / ← PP_3982	transposase/hypothetical protein
RA	4,488,993	C→T	12.0%	intergenic (+346/+225)	PP_3981 → / ← PP_3982	transposase/hypothetical protein
RA	4,492,699	G→A	8.3%	E194E (GAG→GAA)	PP_3983 →	hypothetical protein
RA	4,501,297	A→T	10.5%	intergenic (‑236/+19)	PP_3989 ← / ← PP_t60	DNA‑cytosine methyltransferase/tRNA‑Ser
RA	4,501,300	A→T	11.3%	intergenic (‑239/+16)	PP_3989 ← / ← PP_t60	DNA‑cytosine methyltransferase/tRNA‑Ser
RA	4,502,236	T→C	8.0%	intergenic (+28/‑136)	yccA → / → xanP	FtsH‑mediated proteolysis substrate/modulator/xanthine permease
RA	4,502,237	T→G	7.7%	intergenic (+29/‑135)	yccA → / → xanP	FtsH‑mediated proteolysis substrate/modulator/xanthine permease
RA	4,502,238	C→A	8.2%	intergenic (+30/‑134)	yccA → / → xanP	FtsH‑mediated proteolysis substrate/modulator/xanthine permease
RA	4,502,239	G→A	8.2%	intergenic (+31/‑133)	yccA → / → xanP	FtsH‑mediated proteolysis substrate/modulator/xanthine permease
RA	4,509,703	T→C	100%	N120S (AAC→AGC)	serS ←	serine‑‑tRNA ligase
RA	4,512,462	C→A	6.0%	G9V (GGT→GTT)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,512,465	T→G	6.3%	N8T (AAC→ACC)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,520,454	A→T	14.3%	intergenic (+45/+27)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,520,464	A→G	14.8%	intergenic (+55/+17)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,528,005	T→A	5.6%	F351I (TTT→ATT) ‡	purB →	adenylosuccinate lyase
RA	4,528,006	T→A	5.6%	F351Y (TTT→TAT) ‡	purB →	adenylosuccinate lyase
RA	4,528,007	T→A	5.6%	F351L (TTT→TTA) ‡	purB →	adenylosuccinate lyase
RA	4,528,353	T→A	11.6%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,530,025	T→A	18.0%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,026	T→A	23.0%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,532,984	T→C	7.7%	L239P (CTG→CCG)	PP_4020 →	oxidoreductase
RA	4,550,896	C→G	6.7%	R89G (CGT→GGT)	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,550,901	A→T	6.9%	E90D (GAA→GAT)	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,550,902	A→T	7.1%	I91F (ATC→TTC)	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,550,907	C→G	7.2%	T92T (ACC→ACG)	pydA →	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA
RA	4,554,507	A→C	7.0%	V140G (GTC→GGC)	PP_4041 ←	glycoside hydrolase
RA	4,569,304	A→G	6.6%	N412D (AAC→GAC)	malQ →	4‑alpha‑glucanotransferase
RA	4,582,560	A→T	6.1%	L290M (TTG→ATG)	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	100%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,597,751	C→A	8.7%	Q686H (CAG→CAT) ‡	PP_4071 ←	membrane protein
RA	4,597,752	T→A	8.7%	Q686L (CAG→CTG) ‡	PP_4071 ←	membrane protein
RA	4,597,755	T→A	8.7%	K685M (AAG→ATG) ‡	PP_4071 ←	membrane protein
RA	4,597,756	T→G	8.2%	K685Q (AAG→CAG) ‡	PP_4071 ←	membrane protein
RA	4,613,319	T→C	10.0%	L59L (TTA→CTA)	PP_4084 →	hypothetical protein
RA	4,634,353	A→T	10.6%	V253D (GTC→GAC)	uvrC ←	UvrABC system protein C
RA	4,634,356	T→A	10.7%	D252V (GAC→GTC)	uvrC ←	UvrABC system protein C
RA	4,634,359	A→T	10.2%	V251D (GTC→GAC)	uvrC ←	UvrABC system protein C
RA	4,649,982	T→G	15.1%	H311P (CAC→CCC)	PP_4113 ←	hypothetical protein
RA	4,649,985	T→A	14.0%	K310M (AAG→ATG) ‡	PP_4113 ←	hypothetical protein
RA	4,649,986	T→A	14.0%	K310* (AAG→TAG) ‡	PP_4113 ←	hypothetical protein
RA	4,649,989	C→A	14.1%	G309C (GGC→TGC)	PP_4113 ←	hypothetical protein
RA	4,649,996	C→T	10.5%	P306P (CCG→CCA)	PP_4113 ←	hypothetical protein
RA	4,655,070	C→T	8.0%	intergenic (+222/‑36)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,655,516	C→G	7.8%	G137G (GGC→GGG)	PP_4118 →	membrane protein
RA	4,655,518	T→C	7.8%	L138P (CTC→CCC) ‡	PP_4118 →	membrane protein
RA	4,655,519	C→G	7.7%	L138L (CTC→CTG) ‡	PP_4118 →	membrane protein
RA	4,655,520	G→A	7.8%	G139S (GGC→AGC) ‡	PP_4118 →	membrane protein
RA	4,655,522	C→G	7.8%	G139G (GGC→GGG) ‡	PP_4118 →	membrane protein
RA	4,658,398	A→C	7.3%	E345A (GAA→GCA)	nuoC →	NADH‑quinone oxidoreductase subunit C/D
RA	4,658,400	G→T	7.3%	A346S (GCG→TCG)	nuoC →	NADH‑quinone oxidoreductase subunit C/D
RA	4,666,312	G→C	8.5%	S26S (TCG→TCC)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,672,522	C→G	6.0%	G76A (GGT→GCT)	PP_4135 ←	hypothetical protein
RA	4,673,549	G→C	10.1%	P107P (CCG→CCC)	PP_4137 →	outer membrane siderophore receptor
RA	4,673,550	G→C	10.1%	G108R (GGG→CGG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,673,551	G→C	10.0%	G108A (GGG→GCG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,681,789:1	+C	6.1%	coding (79/1431 nt)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,681,795	T→A	6.0%	L29M (TTG→ATG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,681,796	T→A	8.3%	L29* (TTG→TAG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,687,693	C→G	10.2%	I223M (ATC→ATG)	PP_4148 →	ABC transporter permease
RA	4,687,696:1	+A	8.8%	coding (672/1074 nt)	PP_4148 →	ABC transporter permease
RA	4,687,701	Δ1 bp	8.5%	coding (677/1074 nt)	PP_4148 →	ABC transporter permease
RA	4,687,705	C→G	8.6%	V227V (GTC→GTG)	PP_4148 →	ABC transporter permease
RA	4,700,758	T→C	14.8%	intergenic (‑71/+79)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,769	A→G	11.7%	intergenic (‑82/+68)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,772	T→G	7.8%	intergenic (‑85/+65)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,773	C→T	8.0%	intergenic (‑86/+64)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,774	A→G	8.0%	intergenic (‑87/+63)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,779	C→T	8.4%	intergenic (‑92/+58)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,780	A→G	8.4%	intergenic (‑93/+57)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,785	C→T	8.4%	intergenic (‑98/+52)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,786	A→G	8.4%	intergenic (‑99/+51)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,787	C→A	9.0%	intergenic (‑100/+50)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,790	C→T	7.6%	intergenic (‑103/+47)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,700,801	G→A	6.3%	intergenic (‑114/+36)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,717,954	G→T	5.3%	E173D (GAG→GAT)	fabB →	3‑oxoacyl‑ACP synthase
RA	4,717,958	A→C	5.0%	I175L (ATC→CTC)	fabB →	3‑oxoacyl‑ACP synthase
RA	4,718,688	C→A	7.5%	intergenic (+32/+99)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,689	T→C	7.9%	intergenic (+33/+98)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,690	G→C	9.9%	intergenic (+34/+97)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,691	G→A	8.1%	intergenic (+35/+96)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,692	T→G	8.7%	intergenic (+36/+95)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,735,320	C→T	100%	M105I (ATG→ATA)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,735,588	G→T	5.6%	S16* (TCA→TAA) ‡	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,735,589	A→T	5.7%	S16T (TCA→ACA) ‡	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,740,795	T→G	10.3%	intergenic (+32/+721)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,796	C→A	8.7%	intergenic (+33/+720)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,744,600	A→C	9.8%	S76A (TCC→GCC)	PP_4198 ←	OmpA family protein
RA	4,744,607	G→T	9.7%	G73G (GGC→GGA)	PP_4198 ←	OmpA family protein
RA	4,747,081	G→A	8.0%	S227S (AGC→AGT) ‡	etfB ←	electron transfer flavoprotein subunit beta
RA	4,747,082	C→G	7.9%	S227T (AGC→ACC) ‡	etfB ←	electron transfer flavoprotein subunit beta
RA	4,747,083	T→C	8.0%	S227G (AGC→GGC) ‡	etfB ←	electron transfer flavoprotein subunit beta
RA	4,767,818	C→T	9.5%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,767,819	A→G	9.2%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,771,576	A→G	7.2%	L2564P (CTG→CCG)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,778,459	T→G	9.5%	I270L (ATC→CTC)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,778,460	C→A	9.5%	E269D (GAG→GAT)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,778,991	G→A	7.2%	I92I (ATC→ATT) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,778,992	A→T	7.0%	I92N (ATC→AAC) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,778,993	T→C	7.0%	I92V (ATC→GTC) ‡	pvdD ←	non‑ribosomal peptide synthetase
RA	4,779,863	T→C	7.8%	Y2484C (TAC→TGC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,121	A→G	10.0%	V2398A (GTG→GCG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,780,122	C→T	9.9%	V2398M (GTG→ATG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,803,624	T→C	8.0%	Q302R (CAG→CGG)	PP_4232 ←	cytochrome c family protein
RA	4,850,158	C→T	8.1%	intergenic (+75/‑112)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,850,159	C→G	7.7%	intergenic (+76/‑111)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,850,160	A→G	8.1%	intergenic (+77/‑110)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,855,539	T→G	8.6%	I106M (ATT→ATG)	PP_4270 →	hypothetical protein
RA	4,855,540	C→A	8.8%	H107N (CAT→AAT)	PP_4270 →	hypothetical protein
RA	4,858,041	G→C	6.6%	G31A (GGG→GCG)	PP_4273 →	MerR family transcriptional regulator
RA	4,858,044	G→C	6.6%	R32P (CGC→CCC)	PP_4273 →	MerR family transcriptional regulator
RA	4,858,146	T→C	10.7%	L66P (CTG→CCG)	PP_4273 →	MerR family transcriptional regulator
RA	4,858,150	G→C	10.7%	V67V (GTG→GTC)	PP_4273 →	MerR family transcriptional regulator
RA	4,858,163	G→C	11.5%	D72H (GAC→CAC)	PP_4273 →	MerR family transcriptional regulator
RA	4,858,167	G→A	9.8%	R73Q (CGG→CAG)	PP_4273 →	MerR family transcriptional regulator
RA	4,873,746	C→A	6.2%	intergenic (‑127/+31)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,873,747	T→A	6.0%	intergenic (‑128/+30)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,873,748	T→G	6.1%	intergenic (‑129/+29)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,876,733	G→A	7.2%	R74C (CGT→TGT)	pucM ←	5‑hydroxyisourate hydrolase
RA	4,884,962	T→G	6.0%	E139A (GAA→GCA) ‡	yedI ←	inner membrane protein
RA	4,884,963	C→A	5.6%	E139* (GAA→TAA) ‡	yedI ←	inner membrane protein
RA	4,888,479	C→A	9.9%	A513D (GCT→GAT)	gcl →	glyoxylate carboligase
RA	4,896,445	G→A	8.7%	intergenic (+78/‑130)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,467	A→G	11.3%	intergenic (+100/‑108)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,899,253	T→G	10.3%	I72I (ATA→ATC)	PP_4307 ←	DMT superfamily permease
RA	4,899,256	C→A	10.4%	A71A (GCG→GCT)	PP_4307 ←	DMT superfamily permease
RA	4,900,074	C→T	7.5%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,902,671	G→A	9.6%	V196M (GTG→ATG) ‡	PP_4310 →	hydantoin racemase
RA	4,902,672	T→C	9.6%	V196A (GTG→GCG) ‡	PP_4310 →	hydantoin racemase
RA	4,904,885	G→T	7.3%	intergenic (‑52/+183)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,904,892	T→A	7.1%	intergenic (‑59/+176)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,904,895	A→C	7.2%	intergenic (‑62/+173)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,914,726	T→A	6.0%	Q142L (CAG→CTG)	ccmE ←	cytochrome c‑type biogenesis protein CcmE
RA	4,914,784	T→G	5.1%	K123Q (AAG→CAG)	ccmE ←	cytochrome c‑type biogenesis protein CcmE
RA	4,914,786	G→C	5.1%	A122G (GCC→GGC)	ccmE ←	cytochrome c‑type biogenesis protein CcmE
RA	4,914,788	C→A	5.1%	L121L (CTG→CTT)	ccmE ←	cytochrome c‑type biogenesis protein CcmE
RA	4,917,383	G→A	7.4%	R17C (CGC→TGC)	ccmA ←	cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA
RA	4,918,174	C→G	10.5%	L191L (CTC→CTG)	PP_4328 →	hypothetical protein
RA	4,948,661	Δ1 bp	6.3%	coding (187/435 nt)	fliO ←	flagellar protein FliO
RA	4,948,667:1	+A	5.6%	coding (181/435 nt)	fliO ←	flagellar protein FliO
RA	4,950,189	Δ1 bp	6.6%	coding (155/969 nt)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,950,194:1	+C	6.9%	coding (150/969 nt)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,961,593	C→T	6.0%	R282H (CGC→CAC)	atoC ←	two‑component system DNA‑binding transcriptional activator AtoC
RA	4,971,954	G→T	8.7%	intergenic (‑389/+28)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,955	C→G	8.4%	intergenic (‑390/+27)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,956	A→C	8.3%	intergenic (‑391/+26)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,984,742:1	+T	7.3%	intergenic (‑43/+10)	cheR ← / ← PP_4393	chemotaxis protein methyltransferase/chemotaxis protein
RA	4,986,048	C→G	8.6%	P97R (CCG→CGG)	flgA →	flagella basal body P‑ring formation protein
RA	5,005,131	A→T	11.8%	T495S (ACA→TCA) ‡	PP_4410 →	hypothetical protein
RA	5,005,132	C→G	13.7%	T495R (ACA→AGA) ‡	PP_4410 →	hypothetical protein
RA	5,005,133	A→T	11.8%	T495T (ACA→ACT) ‡	PP_4410 →	hypothetical protein
RA	5,028,519	C→T	8.3%	P263S (CCG→TCG)	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,905	G→A	6.8%	K391K (AAG→AAA)	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,989	C→T	5.8%	intergenic (+66/‑373)	PP_4432 → / → PP_4433	Xaa‑Pro aminopeptidase/amino acid MFS transporter
RA	5,028,994	A→G	5.8%	intergenic (+71/‑368)	PP_4432 → / → PP_4433	Xaa‑Pro aminopeptidase/amino acid MFS transporter
RA	5,030,748	A→G	7.0%	intergenic (+34/‑461)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,030,751	C→T	6.9%	intergenic (+37/‑458)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,032,756	C→G	14.0%	P92R (CCT→CGT) ‡	PP_4435 →	hypothetical protein
RA	5,032,757	T→C	13.9%	P92P (CCT→CCC) ‡	PP_4435 →	hypothetical protein
RA	5,032,760	G→A	13.9%	A93A (GCG→GCA)	PP_4435 →	hypothetical protein
RA	5,032,761	C→G	14.0%	R94G (CGA→GGA)	PP_4435 →	hypothetical protein
RA	5,039,652	G→T	7.8%	I284I (ATC→ATA)	PP_4446 ←	group II intron‑encoding maturase
RA	5,041,195	C→G	6.0%	intergenic (+173/‑489)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,198	C→T	5.9%	intergenic (+176/‑486)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,075,377	C→T	9.8%	intergenic (+141/+179)	PP_4468 → / ← PP_t58	Cro/CI family transcriptional regulator/tRNA‑Arg
RA	5,075,382	A→G	10.0%	intergenic (+146/+174)	PP_4468 → / ← PP_t58	Cro/CI family transcriptional regulator/tRNA‑Arg
RA	5,079,126	T→A	14.7%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,079,129	T→A	14.9%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,079,511	Δ1 bp	11.8%	noncoding (19/77 nt)	PP_t54 ←	tRNA‑Arg
RA	5,090,047	A→G	9.4%	L297P (CTG→CCG)	astA‑II ←	arginine N‑succinyltransferase subunit alpha
RA	5,090,049	G→C	9.3%	G296G (GGC→GGG) ‡	astA‑II ←	arginine N‑succinyltransferase subunit alpha
RA	5,090,051	C→T	9.2%	G296S (GGC→AGC) ‡	astA‑II ←	arginine N‑succinyltransferase subunit alpha
RA	5,097,222	G→C	11.5%	intergenic (+213/+79)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,225	G→T	13.3%	intergenic (+216/+76)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,231	G→C	11.8%	intergenic (+222/+70)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,232	G→T	12.0%	intergenic (+223/+69)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,234	Δ1 bp	11.4%	intergenic (+225/+67)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,238:1	+G	11.1%	intergenic (+229/+63)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,240	A→C	14.6%	intergenic (+231/+61)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,241	G→C	13.8%	intergenic (+232/+60)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,247	A→C	14.6%	intergenic (+238/+54)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,250	G→C	11.6%	intergenic (+241/+51)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,098,861	C→G	6.5%	V177V (GTG→GTC) ‡	acsA‑I ←	acetyl‑CoA synthetase
RA	5,098,862	A→T	6.3%	V177E (GTG→GAG) ‡	acsA‑I ←	acetyl‑CoA synthetase
RA	5,098,863	C→G	6.2%	V177L (GTG→CTG) ‡	acsA‑I ←	acetyl‑CoA synthetase
RA	5,100,955	C→A	8.0%	M224I (ATG→ATT) ‡	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,100,956	A→T	7.7%	M224K (ATG→AAG) ‡	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,100,957	T→G	9.2%	M224L (ATG→CTG) ‡	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,101,298	G→A	6.6%	A110V (GCA→GTA)	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,112,641	T→A	9.1%	intergenic (‑230/+36)	rluB ← / ← PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
RA	5,112,642	T→A	9.1%	intergenic (‑231/+35)	rluB ← / ← PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
RA	5,125,370	G→C	5.6%	G55R (GGT→CGT)	PP_4512 →	DMT superfamily permease
RA	5,127,636	Δ1 bp	6.4%	coding (1189/2187 nt)	PP_4514 →	alpha/beta hydrolase superfamily esterase
RA	5,141,207	T→G	7.7%	N119H (AAC→CAC)	PP_4525 ←	LysR family transcriptional regulator
RA	5,141,208	C→A	7.7%	V118V (GTG→GTT)	PP_4525 ←	LysR family transcriptional regulator
RA	5,149,180	G→C	5.4%	intergenic (‑166/+282)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,183	G→C	5.8%	intergenic (‑169/+279)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,436	C→G	8.0%	intergenic (‑422/+26)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,437	T→G	8.0%	intergenic (‑423/+25)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,440	C→A	8.0%	intergenic (‑426/+22)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,441	C→G	8.0%	intergenic (‑427/+21)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,444	C→T	8.0%	intergenic (‑430/+18)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,173,244	T→C	9.2%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,247	G→C	9.4%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,248	G→C	9.1%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,251	G→A	9.8%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,179,563	C→T	7.0%	V70V (GTG→GTA)	PP_4557 ←	hypothetical protein
RA	5,180,012	C→G	9.0%	intergenic (‑240/‑43)	PP_4557 ← / → PP_4558	hypothetical protein/GNAT family acetyltransferase
RA	5,182,059	G→T	8.6%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	8.6%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	8.2%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,072	A→C	9.3%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,992	A→T	9.7%	F248I (TTC→ATC)	PP_4563 ←	hypothetical protein
RA	5,182,997	T→A	9.2%	K246M (AAG→ATG) ‡	PP_4563 ←	hypothetical protein
RA	5,182,998	T→A	9.2%	K246* (AAG→TAG) ‡	PP_4563 ←	hypothetical protein
RA	5,183,003	A→T	11.0%	I244N (ATC→AAC)	PP_4563 ←	hypothetical protein
RA	5,187,586	C→G	6.2%	L31V (CTG→GTG)	PP_4567 →	hypothetical protein
RA	5,194,887	T→G	10.3%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,888	C→A	11.2%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,201,440	G→C	6.6%	F25L (TTC→TTG)	PP_4582 ←	membrane protein
RA	5,211,318	A→T	6.4%	F211Y (TTC→TAC)	PP_4592 ←	metal dependent hydrolase
RA	5,232,054	C→G	6.9%	A214A (GCG→GCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,232,057	C→G	6.9%	P213P (CCG→CCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,241,339	T→C	6.3%	D178G (GAC→GGC)	hmgC ←	maleylacetoacetate isomerase
RA	5,244,996	G→A	8.2%	V135M (GTG→ATG)	hmgR →	Hmg transcriptional repressor
RA	5,257,689	A→C	5.9%	V38G (GTG→GGG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,257,696	G→C	5.7%	P36A (CCG→GCG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,257,697	G→C	5.8%	R35R (CGC→CGG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,268,951	T→A	9.8%	intergenic (+19/+17)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,305,576	G→T	6.1%	A559D (GCC→GAC)	recC ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
RA	5,313,014	A→G	6.5%	intergenic (‑333/+381)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,018	G→C	5.3%	intergenic (‑337/+377)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,019	G→C	6.3%	intergenic (‑338/+376)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,276	C→G	11.1%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,279	C→G	11.3%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,318,982	A→G	7.5%	M131T (ATG→ACG)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,318,989	T→A	7.5%	S129C (AGC→TGC)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,318,991	T→A	8.5%	H128L (CAC→CTC)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,329,091	T→C	6.1%	A43A (GCA→GCG)	PP_4689 ←	heme/hemin ABC transporter substrate‑binding protein
RA	5,336,179	G→A	11.6%	R870H (CGC→CAC)	PP_4695 →	two‑component system sensor histidine kinase
RA	5,336,185	C→G	10.5%	A872G (GCC→GGC)	PP_4695 →	two‑component system sensor histidine kinase
RA	5,336,191	T→C	10.6%	V874A (GTG→GCG)	PP_4695 →	two‑component system sensor histidine kinase
RA	5,338,403	T→A	5.9%	noncoding (127/395 nt)	PP_mr53 →	CrcZ ncRNA
RA	5,338,404	T→A	5.9%	noncoding (128/395 nt)	PP_mr53 →	CrcZ ncRNA
RA	5,340,378	C→G	5.8%	A76G (GCC→GGC)	folK →	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
RA	5,341,505	C→T	6.4%	A204A (GCC→GCT)	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,341,507	G→C	6.3%	G205A (GGC→GCC)	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,341,509	A→G	6.3%	S206G (AGC→GGC)	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,341,584	G→T	5.3%	V231L (GTG→TTG) ‡	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,341,586	G→C	5.6%	V231V (GTG→GTC) ‡	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,341,588	A→C	5.2%	K232T (AAG→ACG)	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,342,571	T→G	7.4%	intergenic (+17/‑190)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,344,242	G→A	10.1%	E494E (GAG→GAA)	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,344,246	A→C	8.6%	K496Q (AAG→CAG) ‡	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,344,247	A→T	7.9%	K496M (AAG→ATG) ‡	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,344,248	G→T	8.9%	K496N (AAG→AAT) ‡	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,344,252	T→C	8.0%	F498L (TTC→CTC)	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,355,550	G→A	9.0%	A51V (GCG→GTG)	truB ←	tRNA pseudouridine(55) synthase TruB
RA	5,373,225	A→G	10.8%	noncoding (59/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,233	A→G	11.3%	noncoding (67/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,235	G→C	11.7%	noncoding (69/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,236	G→C	11.5%	noncoding (70/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,238	C→T	12.0%	noncoding (72/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,246	C→T	9.1%	noncoding (80/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,384,527	G→C	6.1%	G331R (GGC→CGC) ‡	lldP →	L‑lactate permease
RA	5,384,528	G→C	6.3%	G331A (GGC→GCC) ‡	lldP →	L‑lactate permease
RA	5,388,876	C→A	7.0%	L796M (CTG→ATG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,877	T→G	6.8%	L796R (CTG→CGG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,882	C→A	7.8%	L798M (CTG→ATG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,883	T→G	7.0%	L798R (CTG→CGG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,396,355	T→A	8.5%	F278Y (TTC→TAC)	hsdM →	type I restriction modification system methylase
RA	5,398,548	G→A	6.2%	S520S (TCG→TCA)	hsdS →	type I restriction modification system specificity protein
RA	5,406,214	G→A	6.9%	P132S (CCG→TCG)	PP_4750 ←	amino acid ABC transporter permease
RA	5,407,046	T→G	7.1%	N124T (AAC→ACC)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,050	G→T	7.1%	R123S (CGC→AGC)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,051	C→G	5.9%	L122L (CTG→CTC) ‡	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,052	A→C	5.9%	L122R (CTG→CGG) ‡	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,056	C→A	5.9%	V121L (GTG→TTG)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,426,589	T→C	10.3%	C375C (TGT→TGC)	PP_4765 →	hypothetical protein
RA	5,427,005	G→A	8.1%	T366T (ACC→ACT) ‡	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,427,006	G→C	8.0%	T366S (ACC→AGC) ‡	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,427,007	T→C	8.0%	T366A (ACC→GCC) ‡	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,430,392	A→G	12.5%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,396	A→G	11.0%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,397:1	+A	12.9%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,404	Δ1 bp	11.7%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,406	C→T	12.6%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,410	C→T	12.7%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,452,346	C→T	7.4%	R293C (CGC→TGC) ‡	lnt →	apolipoprotein N‑acyltransferase
RA	5,452,348	C→G	7.4%	R293R (CGC→CGG) ‡	lnt →	apolipoprotein N‑acyltransferase
RA	5,452,350	A→G	7.1%	H294R (CAC→CGC)	lnt →	apolipoprotein N‑acyltransferase
RA	5,461,652	G→A	5.7%	A198T (GCG→ACG)	PP_4798 →	membrane‑bound lytic murein transglycosylase
RA	5,468,758	T→G	6.9%	D45A (GAC→GCC)	mltB ←	membrane‑bound lytic murein transglycosylase B
RA	5,470,649	Δ1 bp	7.1%	coding (1256/1890 nt)	mrdA‑II ←	transpeptidase
RA	5,470,654:1	+T	6.2%	coding (1251/1890 nt)	mrdA‑II ←	transpeptidase
RA	5,478,782	G→C	7.9%	I33M (ATC→ATG)	PP_4816 ←	hypothetical protein
RA	5,485,150	A→G	11.6%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,153	A→G	16.4%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,154	T→C	12.9%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,159	G→A	12.0%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,162	T→C	10.4%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,167	G→A	12.7%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,168	C→T	10.4%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,171	C→T	10.1%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,496,878	T→G	9.9%	intergenic (‑194/‑50)	cobG ← / → cobL	precorrin‑3B synthase/precorrin‑6Y C(5,15)‑methyltransferase
RA	5,498,832	T→A	6.9%	L234Q (CTG→CAG) ‡	cbiD →	cobalt‑precorrin‑6A synthase
RA	5,498,833	G→T	6.9%	L234L (CTG→CTT) ‡	cbiD →	cobalt‑precorrin‑6A synthase
RA	5,498,839	A→T	6.5%	E236D (GAA→GAT)	cbiD →	cobalt‑precorrin‑6A synthase
RA	5,498,840	A→C	6.6%	M237L (ATG→CTG) ‡	cbiD →	cobalt‑precorrin‑6A synthase
RA	5,498,841	T→A	6.3%	M237K (ATG→AAG) ‡	cbiD →	cobalt‑precorrin‑6A synthase
RA	5,509,445	A→T	8.5%	A350A (GCA→GCT)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,509,449	G→C	9.8%	A352P (GCC→CCC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,509,454	G→C	10.2%	G353G (GGG→GGC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,509,458	A→T	10.2%	S355C (AGC→TGC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,518,734	T→A	8.6%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,735	T→A	9.6%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,736	T→A	8.5%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,522,791	T→A	5.1%	intergenic (+25/+15)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,522,794	T→A	5.1%	intergenic (+28/+12)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,529,360	C→G	14.8%	intergenic (‑574/+20)	ydfG ← / ← livF‑II	bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/malonic semialdehyde reductase/ABC transporter ATP‑binding protein
RA	5,531,010	A→C	11.3%	R421R (CGT→CGG)	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,531,013	G→T	11.5%	I420I (ATC→ATA)	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,532,228	C→A	6.7%	K15N (AAG→AAT) ‡	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,532,230	T→G	6.2%	K15Q (AAG→CAG) ‡	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,535,848	T→A	6.1%	S289T (TCG→ACG)	pncB →	nicotinate phosphoribosyltransferase
RA	5,537,058	A→G	8.1%	intergenic (+35/+68)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,061	A→T	11.6%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,062	G→C	9.2%	intergenic (+39/+64)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,067	A→G	10.6%	intergenic (+44/+59)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,068	A→G	8.5%	intergenic (+45/+58)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,069	C→T	9.1%	intergenic (+46/+57)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,070	C→T	8.9%	intergenic (+47/+56)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,075	G→C	17.2%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,076	A→T	12.4%	intergenic (+53/+50)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,079	C→T	8.9%	intergenic (+56/+47)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,549,275	Δ1 bp	85.9%	intergenic (‑222/‑51)	rnr ← / → PP_t46	exoribonuclease R/tRNA‑Leu
RA	5,550,661	T→A	10.4%	S301S (TCT→TCA)	PP_4881 →	iron ABC transporter substrate‑binding protein
RA	5,550,663	A→G	10.4%	D302G (GAC→GGC)	PP_4881 →	iron ABC transporter substrate‑binding protein
RA	5,550,672	T→A	9.9%	L305Q (CTG→CAG)	PP_4881 →	iron ABC transporter substrate‑binding protein
RA	5,554,882	T→C	7.3%	E5G (GAA→GGA) ‡	PP_4886 ←	hypothetical protein
RA	5,554,883	C→T	7.1%	E5K (GAA→AAA) ‡	PP_4886 ←	hypothetical protein
RA	5,554,884	A→G	7.1%	S4S (TCT→TCC) ‡	PP_4886 ←	hypothetical protein
RA	5,554,885	G→A	7.1%	S4F (TCT→TTT) ‡	PP_4886 ←	hypothetical protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,557,922	T→G	8.7%	intergenic (‑293/+38)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,924	T→G	8.3%	intergenic (‑295/+36)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,557,925	C→A	10.3%	intergenic (‑296/+35)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,558,505	A→T	11.4%	S250T (TCC→ACC)	purA ←	adenylosuccinate synthetase
RA	5,558,507	A→T	12.7%	I249N (ATT→AAT)	purA ←	adenylosuccinate synthetase
RA	5,558,509	A→T	11.7%	G248G (GGT→GGA)	purA ←	adenylosuccinate synthetase
RA	5,579,782	C→G	9.1%	V361V (GTG→GTC) ‡	serB ←	phosphoserine phosphatase
RA	5,579,784	C→G	8.7%	V361L (GTG→CTG) ‡	serB ←	phosphoserine phosphatase
RA	5,582,813	T→A	7.9%	H178L (CAC→CTC)	PP_4911 ←	hypothetical protein
RA	5,582,816	T→A	7.3%	Q177L (CAG→CTG)	PP_4911 ←	hypothetical protein
RA	5,582,819	T→A	7.1%	Q176L (CAG→CTG)	PP_4911 ←	hypothetical protein
RA	5,582,822	T→A	8.1%	E175V (GAG→GTG)	PP_4911 ←	hypothetical protein
RA	5,587,808	T→C	7.9%	K447R (AAG→AGG)	parE ←	DNA topoisomerase IV subunit B
RA	5,587,815	G→T	6.9%	R445S (CGC→AGC)	parE ←	DNA topoisomerase IV subunit B
RA	5,587,816	C→G	6.8%	L444L (CTG→CTC) ‡	parE ←	DNA topoisomerase IV subunit B
RA	5,587,817	A→C	6.3%	L444R (CTG→CGG) ‡	parE ←	DNA topoisomerase IV subunit B
RA	5,608,300	G→C	8.5%	intergenic (‑162/+26)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,612,015	C→G	9.1%	R337G (CGC→GGC) ‡	PP_4931 →	hypothetical protein
RA	5,612,016	G→C	8.8%	R337P (CGC→CCC) ‡	PP_4931 →	hypothetical protein
RA	5,612,017	C→G	8.9%	R337R (CGC→CGG) ‡	PP_4931 →	hypothetical protein
RA	5,614,881	T→C	5.0%	K214R (AAG→AGG)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,637,444	A→T	7.6%	intergenic (+9/‑23)	PP_4948 → / → PP_4949	acyl‑CoA dehydrogenase family protein/TldD/PmbA family peptidase
RA	5,643,276	T→C	7.4%	intergenic (+61/‑62)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,646,266	A→T	5.6%	D540V (GAC→GTC)	PP_4954 →	membrane protein
RA	5,648,980	G→A	12.2%	A29V (GCG→GTG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,648,981	C→G	12.3%	A29P (GCG→CCG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,648,982	C→G	14.0%	Q28H (CAG→CAC) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,648,983	T→C	12.2%	Q28R (CAG→CGG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,651,374	T→G	10.1%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	10.2%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,595	A→G	5.4%	M292T (ATG→ACG)	fba ←	fructose‑bisphosphate aldolase
RA	5,651,598	A→T	5.5%	L291Q (CTG→CAG)	fba ←	fructose‑bisphosphate aldolase
RA	5,651,601	C→T	5.5%	R290H (CGT→CAT)	fba ←	fructose‑bisphosphate aldolase
RA	5,655,626:1	+A	9.2%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	9.2%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	6.6%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,641	Δ1 bp	7.3%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,659,688	T→A	5.6%	T244T (ACT→ACA)	metK →	methionine adenosyltransferase
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,777	A→G	6.4%	intergenic (+139/+1)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,675,533	G→A	8.5%	D136D (GAC→GAT) ‡	yceJ ←	iron‑regulated cytochrome b561
RA	5,675,534	T→C	10.5%	D136G (GAC→GGC) ‡	yceJ ←	iron‑regulated cytochrome b561
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,682,324	A→C	7.0%	R1523R (CGT→CGG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,682,331	G→C	5.9%	P1521R (CCG→CGG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,682,338	G→T	6.0%	P1519T (CCG→ACG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,684,794	C→T	6.8%	S700N (AGC→AAC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,688,515	Δ1 bp	6.2%	coding (451/2061 nt)	pilJ ←	twitching motility protein PilJ
RA	5,688,520	T→A	6.5%	Q149L (CAG→CTG)	pilJ ←	twitching motility protein PilJ
RA	5,688,523:1	+G	6.5%	coding (443/2061 nt)	pilJ ←	twitching motility protein PilJ
RA	5,703,478	A→T	6.4%	Q438L (CAG→CTG)	phaC‑II →	poly(3‑hydroxyalkanoate) polymerase
RA	5,704,535	G→A	6.5%	intergenic (+60/+52)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,704,537	T→G	7.4%	intergenic (+62/+50)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,704,538	T→C	6.5%	intergenic (+63/+49)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,704,540	G→C	6.9%	intergenic (+65/+47)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,704,542	G→A	6.9%	intergenic (+67/+45)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,704,543	C→A	6.4%	intergenic (+68/+44)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,704,545	T→C	6.6%	intergenic (+70/+42)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,720,690	Δ1 bp	6.2%	coding (1215/1944 nt)	PP_5021 →	methyl‑accepting chemotaxis transducer
RA	5,740,457	G→A	21.6%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,467	T→G	36.7%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	29.0%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	30.8%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	26.7%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,484	T→C	12.0%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,768,986	C→A	7.1%	R629L (CGC→CTC)	PP_5060 ←	hypothetical protein
RA	5,774,913	C→G	9.2%	I260M (ATC→ATG)	betB →	NAD‑dependent betaine aldehyde dehydrogenase
RA	5,774,917	T→A	8.3%	C262S (TGT→AGT)	betB →	NAD‑dependent betaine aldehyde dehydrogenase
RA	5,774,921	C→G	8.7%	A263G (GCC→GGC)	betB →	NAD‑dependent betaine aldehyde dehydrogenase
RA	5,776,703	C→T	6.9%	G340G (GGC→GGT)	betA‑II →	choline dehydrogenase
RA	5,786,988	C→A	5.4%	S134* (TCG→TAG)	trxC →	thioredoxin
RA	5,786,991	T→G	5.4%	L135R (CTG→CGG)	trxC →	thioredoxin
RA	5,790,620	A→T	11.8%	intergenic (‑24/+33)	PP_5073 ← / ← hemE	hypothetical protein/uroporphyrinogen decarboxylase
RA	5,790,625	A→T	11.8%	intergenic (‑29/+28)	PP_5073 ← / ← hemE	hypothetical protein/uroporphyrinogen decarboxylase
RA	5,793,000	A→C	5.1%	C111G (TGC→GGC)	gltD ←	glutamate synthase subunit beta
RA	5,793,142	C→T	6.1%	P63P (CCG→CCA)	gltD ←	glutamate synthase subunit beta
RA	5,795,436	C→G	5.6%	D822H (GAC→CAC)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,795,437	C→G	5.6%	V821V (GTG→GTC)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,798,193	C→T	7.3%	intergenic (‑294/+80)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,198	T→C	6.9%	intergenic (‑299/+75)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,201	G→A	7.2%	intergenic (‑302/+72)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,278	G→T	5.7%	R529S (CGC→AGC)	PP_5077 ←	hypothetical protein
RA	5,798,284	T→C	5.3%	T527A (ACG→GCG)	PP_5077 ←	hypothetical protein
RA	5,798,289	A→C	6.7%	L525R (CTG→CGG)	PP_5077 ←	hypothetical protein
RA	5,807,984	A→G	9.6%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,985	T→C	10.0%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,986	G→A	9.9%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,987	C→T	9.8%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,824,712	T→G	7.5%	intergenic (+136/+38)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,713	T→A	7.4%	intergenic (+137/+37)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,714	T→A	8.6%	intergenic (+138/+36)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,715	C→A	7.3%	intergenic (+139/+35)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,838,607	A→G	5.6%	intergenic (+37/‑24)	PP_5116 → / → yheT	hypothetical protein/putative hydrolase
RA	5,844,112	A→G	5.7%	D245G (GAC→GGC)	PP_5122 →	GMC family oxidoreductase
RA	5,857,961	T→A	5.9%	L170L (CTT→CTA)	PP_5134 →	hypothetical protein
RA	5,857,965	C→G	5.7%	R172G (CGG→GGG)	PP_5134 →	hypothetical protein
RA	5,857,969	T→A	6.0%	L173H (CTT→CAT)	PP_5134 →	hypothetical protein
RA	5,867,733:1	+C	5.5%	intergenic (‑28/+24)	thyA ← / ← lgt	thymidylate synthase/prolipoprotein diacylglyceryl transferase
RA	5,867,738	Δ1 bp	5.2%	intergenic (‑33/+19)	thyA ← / ← lgt	thymidylate synthase/prolipoprotein diacylglyceryl transferase
RA	5,897,782	G→C	8.9%	intergenic (‑182/+52)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,903,164	G→T	16.7%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	24.0%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,905,376	A→T	9.1%	F96I (TTC→ATC)	spuG ←	spermidine/putrescine ABC transporter permease
RA	5,905,377	C→G	9.0%	A95A (GCG→GCC)	spuG ←	spermidine/putrescine ABC transporter permease
RA	5,905,380	C→G	9.2%	M94I (ATG→ATC) ‡	spuG ←	spermidine/putrescine ABC transporter permease
RA	5,905,381	A→T	9.4%	M94K (ATG→AAG) ‡	spuG ←	spermidine/putrescine ABC transporter permease
RA	5,907,912	Δ1 bp	5.7%	coding (55/1095 nt)	spuE ←	spermidine/putrescine ABC transporter substrate‑binding protein
RA	5,914,124	C→T	8.9%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,126	C→G	10.2%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,128	A→G	9.3%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,141	T→C	9.7%	intergenic (+33/+120)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,929,549	T→A	7.4%	H280L (CAC→CTC)	visC ←	ubiquinone biosynthesis oxidoreductase
RA	5,935,557	C→G	7.8%	S193W (TCG→TGG)	fau →	5‑formyltetrahydrofolate cyclo‑ligase
RA	5,938,660	C→A	11.8%	R407R (CGC→CGA)	rbbA →	ribosome‑associated ATPase
RA	5,938,662	T→A	11.5%	L408Q (CTG→CAG)	rbbA →	ribosome‑associated ATPase
RA	5,938,664	T→G	11.5%	S409A (TCG→GCG)	rbbA →	ribosome‑associated ATPase
RA	5,948,140	C→G	100%	A112P (GCC→CCC)	rho ←	transcription termination factor Rho
RA	5,959,995	A→T	6.2%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,959,996	A→T	6.2%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,962,273	A→C	6.3%	D390A (GAC→GCC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,962,276	G→T	6.3%	G391V (GGC→GTC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,967,628	A→C	7.7%	L22R (CTG→CGG)	amtB ←	ammonium transporter AmtB
RA	5,970,527	C→T	5.9%	R256H (CGC→CAC)	PP_5236 ←	hypothetical protein
RA	5,980,182	G→A	5.6%	R276Q (CGG→CAG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,987,563	C→T	6.3%	R215R (CGC→CGT)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,987,564	A→G	6.3%	T216A (ACG→GCG)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,988,889	C→A	28.2%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	30.8%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	31.2%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	29.8%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	29.4%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,996,238	C→T	7.3%	R265H (CGT→CAT)	PP_5252 ←	hypothetical protein
RA	5,996,241	A→G	6.1%	M264T (ATG→ACG)	PP_5252 ←	hypothetical protein
RA	6,007,971	C→G	7.1%	T86S (ACC→AGC) ‡	norM →	multidrug resistance protein NorM
RA	6,007,972	C→T	7.1%	T86T (ACC→ACT) ‡	norM →	multidrug resistance protein NorM
RA	6,007,975	A→G	7.1%	R87R (CGA→CGG)	norM →	multidrug resistance protein NorM
RA	6,007,976	C→G	7.1%	L88V (CTG→GTG)	norM →	multidrug resistance protein NorM
RA	6,009,143	T→C	9.9%	intergenic (+40/+42)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,013,861	C→T	8.7%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,863	T→C	8.3%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,362	C→T	8.0%	D135N (GAT→AAT)	PP_5266 ←	acetyl‑CoA hydrolase family protein
RA	6,023,159	G→A	7.3%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,023,160	T→C	7.3%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,039,241	A→C	5.3%	intergenic (‑261/+33)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,040,794	T→A	7.2%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,043,666	T→A	5.6%	intergenic (+18/+16)	gmk → / ← PP_5297	deoxyguanylate kinase/guanylate kinase/amino acid transporter
RA	6,089,214	T→C	7.2%	Y131Y (TAT→TAC)	potF‑IV →	putrescine‑binding protein
RA	6,089,217	G→A	7.0%	M132I (ATG→ATA)	potF‑IV →	putrescine‑binding protein
RA	6,108,335	G→C	7.2%	W23C (TGG→TGC)	PP_5358 →	hypothetical protein
RA	6,111,188	G→C	11.9%	P108A (CCA→GCA)	PP_5361 ←	protein P47K
RA	6,111,197	C→G	7.8%	E105Q (GAG→CAG)	PP_5361 ←	protein P47K
RA	6,127,162	C→G	9.2%	V241V (GTG→GTC) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,163	A→T	8.7%	V241E (GTG→GAG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,164	C→G	9.1%	V241L (GTG→CTG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,129,160	A→C	13.8%	intergenic (+22/+45)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,170	C→T	13.1%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,173	A→T	12.7%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,176	A→G	12.8%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,186	G→T	7.4%	intergenic (+48/+19)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,152,625	G→C	5.6%	R69P (CGA→CCA)	PP_5738 →	hypothetical protein
RA	6,157,589	C→T	7.9%	D343D (GAC→GAT)	PP_5400 →	hypothetical protein
RA	6,169,790	T→A	5.7%	S169C (AGC→TGC)	PP_5408 ←	hypothetical protein
RA	6,175,610	G→T	7.7%	I329I (ATC→ATA) ‡	atpD ←	ATP synthase subunit beta
RA	6,175,611	A→C	7.7%	I329S (ATC→AGC) ‡	atpD ←	ATP synthase subunit beta
RA	6,176,100	G→A	10.6%	A166V (GCC→GTC)	atpD ←	ATP synthase subunit beta
RA	6,177,515	C→T	6.6%	intergenic (‑31/+18)	atpG ← / ← atpA	ATP synthase subunit gamma/ATP synthase subunit alpha
RA	6,177,516	T→C	6.6%	intergenic (‑32/+17)	atpG ← / ← atpA	ATP synthase subunit gamma/ATP synthase subunit alpha
RA	6,177,517	G→A	6.6%	intergenic (‑33/+16)	atpG ← / ← atpA	ATP synthase subunit gamma/ATP synthase subunit alpha
RA	6,177,518	A→G	6.6%	intergenic (‑34/+15)	atpG ← / ← atpA	ATP synthase subunit gamma/ATP synthase subunit alpha
RA	6,179,550	G→A	7.8%	S29L (TCA→TTA)	atpH ←	ATP synthase subunit delta

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171370–176296	176296	1–4927	19 [18]	[18] 19	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176658–181706	181706	1–5049	20 [18]	[17] 19	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	2038182	2038414	233	20 [18]	[18] 20	[rffE]	[rffE]
*	*	÷	NC_002947	4808126	4808173	48	19 [17]	[0] 38	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2585	57 (1.050)	9 (0.170)	8/252	NT	13.9%	coding (1797/1896 nt)	trmF	tRNA uridine 5‑carboxymethylaminomethyl modification protein
	?	NC_002947	= 2610	56 (1.070)					coding (1772/1896 nt)	trmF	tRNA uridine 5‑carboxymethylaminomethyl modification protein
*	?	NC_002947	4272 =	61 (1.130)	4 (0.080)	4/254	NT	5.9%	coding (110/1896 nt)	trmF	tRNA uridine 5‑carboxymethylaminomethyl modification protein
	?	NC_002947	4308 =	68 (1.290)					coding (74/1896 nt)	trmF	tRNA uridine 5‑carboxymethylaminomethyl modification protein
*	?	NC_002947	= 5491	55 (1.020)	4 (0.080)	3/246	NT	6.8%	coding (892/1371 nt)	trmE	GTPase
	?	NC_002947	= 5517	57 (1.110)					coding (866/1371 nt)	trmE	GTPase
*	?	NC_002947	= 22212	45 (0.830)	4 (0.080)	4/248	NT	8.1%	coding (42/360 nt)	PP_0017	transcriptional regulator
	?	NC_002947	= 22227	48 (0.930)					coding (57/360 nt)	PP_0017	transcriptional regulator
*	?	NC_002947	= 33465	53 (0.980)	6 (0.120)	5/242	NT	10.0%	coding (573/675 nt)	czcR‑I	heavy metal two‑component system response regulator
	?	NC_002947	= 33492	59 (1.170)					coding (600/675 nt)	czcR‑I	heavy metal two‑component system response regulator
*	?	NC_002947	77842 =	55 (1.020)	3 (0.060)	3/246	NT	5.3%	coding (631/933 nt)	fmt	methionyl‑tRNA formyltransferase
	?	NC_002947	77876 =	56 (1.090)					coding (597/933 nt)	fmt	methionyl‑tRNA formyltransferase
*	?	NC_002947	= 82119	83 (1.530)	4 (0.080) +CAT	4/254	NT	5.4%	intergenic (+96/+32)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	86825 =	60 (1.110)					intergenic (‑108/+37)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	102602 =	68 (1.260)	4 (0.080)	4/252	NT	5.3%	coding (1422/2052 nt)	prlC	oligopeptidase A
	?	NC_002947	102640 =	76 (1.450)					coding (1460/2052 nt)	prlC	oligopeptidase A
*	?	NC_002947	106227 =	44 (0.810)	3 (0.060)	3/242	NT	6.3%	coding (94/1518 nt)	PP_0101	sulfate transporter
	?	NC_002947	106271 =	49 (0.970)					coding (138/1518 nt)	PP_0101	sulfate transporter
*	?	NC_002947	106979 =	69 (1.280)	5 (0.100)	5/244	NT	7.8%	coding (846/1518 nt)	PP_0101	sulfate transporter
	?	NC_002947	107022 =	54 (1.060)					coding (889/1518 nt)	PP_0101	sulfate transporter
*	?	NC_002947	= 142705	72 (1.330)	5 (0.100)	4/246	NT	6.6%	coding (649/822 nt)	PP_0134	hypothetical protein
	?	NC_002947	= 142750	74 (1.450)					coding (694/822 nt)	PP_0134	hypothetical protein
*	?	NC_002947	186554 =	71 (1.310)	4 (0.080)	4/246	NT	5.6%	coding (363/690 nt)	PP_0163	transcriptional regulator
	?	NC_002947	186606 =	68 (1.330)					coding (311/690 nt)	PP_0163	transcriptional regulator
*	?	NC_002947	235320 =	69 (1.280)	8 (0.160)	6/240	NT	12.3%	intergenic (+17/+108)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235401 =	50 (1.000)					intergenic (+98/+27)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	274087 =	59 (1.090)	5 (0.100)	5/252	NT	8.0%	coding (483/801 nt)	PP_0221	methionine ABC transporter substrate‑binding protein
	?	NC_002947	274119 =	58 (1.110)					coding (451/801 nt)	PP_0221	methionine ABC transporter substrate‑binding protein
*	?	NC_002947	= 274885	44 (0.810)	3 (0.060)	3/246	NT	7.3%	coding (1063/1386 nt)	PP_0222	DszA family monooxygenase
	?	NC_002947	= 274912	35 (0.680)					coding (1036/1386 nt)	PP_0222	DszA family monooxygenase
*	?	NC_002947	277706 =	59 (1.090)	5 (0.100)	5/242	NT	8.9%	coding (800/1242 nt)	PP_0224	DszC family monooxygenase
	?	NC_002947	277759 =	48 (0.950)					coding (747/1242 nt)	PP_0224	DszC family monooxygenase
*	?	NC_002947	= 294076	57 (1.050)	4 (0.080)	3/246	NT	6.9%	coding (274/798 nt)	ssuC	aliphatic sulfonatesABC transporter permease
	?	NC_002947	= 294094	54 (1.060)					coding (292/798 nt)	ssuC	aliphatic sulfonatesABC transporter permease
*	?	NC_002947	307756 =	59 (1.090)	4 (0.080)	4/244	NT	6.6%	intergenic (+771/‑1098)	hslO/PP_0254	molecular chaperone HslO/hypothetical protein
	?	NC_002947	307795 =	57 (1.120)					intergenic (+810/‑1059)	hslO/PP_0254	molecular chaperone HslO/hypothetical protein
*	?	NC_002947	= 345369	54 (1.000)	4 (0.080)	4/248	NT	6.5%	coding (234/1068 nt)	mutY	A/G‑specific adenine glycosylase
	?	NC_002947	= 345427	64 (1.240)					coding (176/1068 nt)	mutY	A/G‑specific adenine glycosylase
*	?	NC_002947	= 401301	NA (NA)	3 (0.060)	3/246	NT	7.3%	coding (887/1059 nt)	PP_0334	transposase
	?	NC_002947	401364 =	40 (0.740)					coding (950/1059 nt)	PP_0334	transposase
*	?	NC_002947	401302 =	17 (0.310)	6 (0.110)	5/252	NT	12.1%	coding (888/1059 nt)	PP_0334	transposase
	?	NC_002947	3968961 =	71 (1.350)					coding (1089/1179 nt)	PP_3498	transposase
*	?	NC_002947	403251 =	68 (1.260)	4 (0.080)	4/230	NT	9.1%	intergenic (‑54/+115)	msrA/PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
	?	NC_002947	= 5162580	20 (0.420)					intergenic (+103/+98)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	403444 =	64 (1.180)	4 (0.080)	3/254	NT	5.6%	coding (2613/2691 nt)	PP_0337	sensory box protein
	?	NC_002947	403546 =	72 (1.360)					coding (2511/2691 nt)	PP_0337	sensory box protein
*	?	NC_002947	= 422700	46 (0.850)	4 (0.080)	4/242	NT	8.1%	coding (1248/2787 nt)	PP_0348	hypothetical protein
	?	NC_002947	= 422741	48 (0.950)					coding (1207/2787 nt)	PP_0348	hypothetical protein
*	?	NC_002947	434552 =	84 (1.550)	5 (0.100)	5/246	NT	6.4%	coding (648/2178 nt)	glcB	malate synthase G
	?	NC_002947	434621 =	66 (1.290)					coding (579/2178 nt)	glcB	malate synthase G
*	?	NC_002947	437153 =	71 (1.310)	4 (0.080)	4/246	NT	5.9%	coding (135/888 nt)	PP_0358	membrane protein
	?	NC_002947	437199 =	60 (1.170)					coding (89/888 nt)	PP_0358	membrane protein
*	?	NC_002947	449090 =	74 (1.370)	4 (0.080)	4/246	NT	5.1%	coding (261/1779 nt)	PP_0370	acyl‑CoA dehydrogenase family protein
	?	NC_002947	449137 =	80 (1.560)					coding (308/1779 nt)	PP_0370	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	487574 =	66 (1.220)	5 (0.100)	5/246	NT	7.7%	coding (728/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	487613 =	57 (1.110)					coding (689/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
*	?	NC_002947	488226 =	58 (1.070)	4 (0.080)	4/244	NT	6.8%	coding (76/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	488273 =	55 (1.080)					coding (29/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
*	?	NC_002947	505818 =	66 (1.220)	6 (0.120)	6/248	NT	8.3%	coding (312/1482 nt)	trpE	anthranilate synthase component 1
	?	NC_002947	505877 =	69 (1.340)					coding (371/1482 nt)	trpE	anthranilate synthase component 1
*	?	NC_002947	538932 =	50 (0.920)	4 (0.080)	4/244	NT	7.6%	coding (1310/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
	?	NC_002947	538978 =	51 (1.010)					coding (1356/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
*	?	NC_002947	= 549643	58 (1.070)	3 (0.060)	3/246	NT	5.5%	coding (318/1194 nt)	tufB	elongation factor Tu‑B
	?	NC_002947	= 549666	49 (0.960)					coding (341/1194 nt)	tufB	elongation factor Tu‑B
*	?	NC_002947	= 563101	62 (1.150)	4 (0.080)	4/250	NT	6.2%	coding (184/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha
	?	NC_002947	= 563125	62 (1.190)					coding (208/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha
*	?	NC_002947	596432 =	64 (1.180)	5 (0.100)	5/244	NT	7.8%	coding (432/711 nt)	PP_0507	ABC transporter ATP‑binding protein
	?	NC_002947	596498 =	58 (1.140)					coding (366/711 nt)	PP_0507	ABC transporter ATP‑binding protein
*	?	NC_002947	= 602690	38 (0.700)	4 (0.080)	4/248	NT	7.9%	coding (196/1110 nt)	ribAB‑I	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II
	?	NC_002947	= 602753	57 (1.110)					coding (259/1110 nt)	ribAB‑I	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II
*	?	NC_002947	611927 =	NA (NA)	3 (0.060)	3/242	NT	NA	coding (824/966 nt)	PP_0526	transposase
	?	NC_002947	611970 =	NA (NA)					coding (867/966 nt)	PP_0526	transposase
*	?	NC_002947	637399 =	71 (1.310)	4 (0.080)	3/248	NT	6.1%	coding (277/630 nt)	PP_0548	phenylacrylic acid decarboxylase PadA
	?	NC_002947	637468 =	55 (1.070)					coding (346/630 nt)	PP_0548	phenylacrylic acid decarboxylase PadA
*	?	NC_002947	= 640402	57 (1.050)	3 (0.060)	3/240	NT	5.3%	coding (343/1929 nt)	PP_0551	MORN domain‑containing protein
	?	NC_002947	= 640426	55 (1.100)					coding (319/1929 nt)	PP_0551	MORN domain‑containing protein
*	?	NC_002947	= 652782	59 (1.090)	5 (0.110)	4/220	NT	16.7%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808159	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
*	?	NC_002947	674337 =	56 (1.040)	4 (0.080)	4/242	NT	6.6%	intergenic (‑229/+77)	PP_0575/PP_0576	membrane protein/lipoprotein
	?	NC_002947	674395 =	61 (1.210)					intergenic (‑287/+19)	PP_0575/PP_0576	membrane protein/lipoprotein
*	?	NC_002947	695523 =	84 (1.550)	6 (0.120)	6/244	NT	7.0%	intergenic (+17/‑57)	PP_0596/mmsA‑I	omega‑amino acid‑‑pyruvate aminotransferase/methylmalonate‑semialdehyde dehydrogenase
	?	NC_002947	695554 =	81 (1.600)					intergenic (+48/‑26)	PP_0596/mmsA‑I	omega‑amino acid‑‑pyruvate aminotransferase/methylmalonate‑semialdehyde dehydrogenase
*	?	NC_002947	= 714073	58 (1.070)	4 (0.080)	4/244	NT	6.1%	coding (87/948 nt)	ispH	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase
	?	NC_002947	= 714124	69 (1.360)					coding (138/948 nt)	ispH	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase
*	?	NC_002947	= 719051	51 (0.940)	3 (0.060)	3/248	NT	5.7%	coding (866/1410 nt)	PP_0613	amidase family protein
	?	NC_002947	= 719074	50 (0.970)					coding (843/1410 nt)	PP_0613	amidase family protein
*	?	NC_002947	= 741869	NA (NA)	6 (0.120)	4/248	NT	NA	intergenic (+469/‑31)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741902	NA (NA)					coding (3/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 742778	NA (NA)	5 (0.100)	4/248	NT	NA	coding (879/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 742807	NA (NA)					coding (908/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	746753 =	NA (NA)	7 (0.140)	7/244	NT	NA	coding (121/357 nt)	PP_0638	transposase
	?	NC_002947	746788 =	NA (NA)					coding (86/357 nt)	PP_0638	transposase
*	?	NC_002947	747817 =	52 (0.960)	3 (0.060)	3/250	NT	5.9%	coding (151/216 nt)	PP_5448	hypothetical protein
	?	NC_002947	747850 =	45 (0.870)					coding (184/216 nt)	PP_5448	hypothetical protein
*	?	NC_002947	= 760073	49 (0.910)	3 (0.060)	3/248	NT	6.3%	coding (212/228 nt)	PP_5453	hypothetical protein
	?	NC_002947	= 760099	43 (0.830)					intergenic (+10/+55)	PP_5453/PP_0652	hypothetical protein/gluconate transporter
*	?	NC_002947	760621 =	82 (1.520)	4 (0.080)	3/244	NT	5.3%	coding (919/1386 nt)	PP_0652	gluconate transporter
	?	NC_002947	760674 =	67 (1.320)					coding (866/1386 nt)	PP_0652	gluconate transporter
*	?	NC_002947	760762 =	44 (0.810)	4 (0.080)	4/244	NT	8.6%	coding (778/1386 nt)	PP_0652	gluconate transporter
	?	NC_002947	760812 =	44 (0.870)					coding (728/1386 nt)	PP_0652	gluconate transporter
*	?	NC_002947	= 761045	40 (0.740)	4 (0.080)	4/250	NT	9.1%	coding (495/1386 nt)	PP_0652	gluconate transporter
	?	NC_002947	= 761071	41 (0.790)					coding (469/1386 nt)	PP_0652	gluconate transporter
*	?	NC_002947	784902 =	55 (1.020)	4 (0.080)	4/252	NT	7.1%	coding (1024/3831 nt)	PP_0672	sensory box protein
	?	NC_002947	784958 =	51 (0.970)					coding (968/3831 nt)	PP_0672	sensory box protein
*	?	NC_002947	786605 =	57 (1.050)	3 (0.060)	3/242	NT	5.8%	intergenic (+27/‑278)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	786687 =	44 (0.870)					intergenic (+109/‑196)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
*	?	NC_002947	= 801988	45 (0.830)	3 (0.060)	3/244	NT	6.5%	coding (473/1227 nt)	obg	GTPase Obg
	?	NC_002947	= 802034	44 (0.870)					coding (519/1227 nt)	obg	GTPase Obg
*	?	NC_002947	823702 =	60 (1.110)	4 (0.080)	4/248	NT	6.7%	coding (902/1431 nt)	PP_0708	betaine‑aldehyde dehydrogenase
	?	NC_002947	823748 =	55 (1.070)					coding (856/1431 nt)	PP_0708	betaine‑aldehyde dehydrogenase
*	?	NC_002947	866552 =	64 (1.180)	4 (0.080)	3/246	NT	6.9%	coding (5/474 nt)	PP_0748	hypothetical protein
	?	NC_002947	866595 =	48 (0.940)					coding (48/474 nt)	PP_0748	hypothetical protein
*	?	NC_002947	= 874115	63 (1.160)	6 (0.120)	4/246	NT	9.4%	coding (473/621 nt)	PP_0758	hypothetical protein
	?	NC_002947	= 874150	56 (1.090)					coding (508/621 nt)	PP_0758	hypothetical protein
*	?	NC_002947	874284 =	47 (0.870)	4 (0.090)	4/216	NT	9.9%	intergenic (+21/‑138)	PP_0758/PP_0759	hypothetical protein/hypothetical protein
	?	NC_002947	874348 =	34 (0.760)					intergenic (+85/‑74)	PP_0758/PP_0759	hypothetical protein/hypothetical protein
*	?	NC_002947	882691 =	48 (0.890)	4 (0.080)	4/248	NT	7.9%	coding (294/1365 nt)	PP_0766	hypothetical protein
	?	NC_002947	882778 =	48 (0.930)					coding (381/1365 nt)	PP_0766	hypothetical protein
*	?	NC_002947	909533 =	58 (1.070)	3 (0.060)	3/248	NT	5.4%	coding (41/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
	?	NC_002947	909594 =	49 (0.950)					coding (102/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
*	?	NC_002947	926480 =	30 (0.550)	4 (0.080)	4/248	NT	11.2%	coding (146/1437 nt)	PP_0805	outer membrane efflux protein
	?	NC_002947	926511 =	35 (0.680)					coding (115/1437 nt)	PP_0805	outer membrane efflux protein
*	?	NC_002947	931659 =	57 (1.050)	4 (0.080)	4/244	NT	6.1%	coding (13963/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	931733 =	69 (1.360)					coding (13889/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	932218 =	48 (0.890)	6 (0.110)	5/252	NT	10.6%	coding (13404/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	932300 =	55 (1.050)					coding (13322/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 945056	59 (1.090)	3 (0.060)	3/250	NT	5.3%	coding (566/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 945116	50 (0.960)					coding (506/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	959364 =	63 (1.160)	4 (0.080)	4/252	NT	6.3%	coding (169/540 nt)	PP_5460	membrane protein
	?	NC_002947	959419 =	58 (1.110)					coding (224/540 nt)	PP_5460	membrane protein
*	?	NC_002947	992453 =	47 (0.870)	4 (0.080)	3/250	NT	7.5%	coding (1075/1464 nt)	der	GTPase Der
	?	NC_002947	992501 =	54 (1.040)					coding (1123/1464 nt)	der	GTPase Der
*	?	NC_002947	= 996212	71 (1.310)	4 (0.080)	4/242	NT	5.5%	coding (1384/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
	?	NC_002947	= 996255	72 (1.430)					coding (1341/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
*	?	NC_002947	= 998060	57 (1.050)	3 (0.060)	3/248	NT	5.1%	coding (2059/2292 nt)	PP_0861	outer membrane ferric siderophore receptor
	?	NC_002947	= 998090	57 (1.110)					coding (2029/2292 nt)	PP_0861	outer membrane ferric siderophore receptor
*	?	NC_002947	1027776 =	48 (0.890)	3 (0.060)	3/250	NT	6.2%	coding (964/1626 nt)	dppA‑III	dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1027815 =	45 (0.870)					coding (925/1626 nt)	dppA‑III	dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1030530 =	55 (1.020)	3 (0.060)	3/240	NT	5.5%	coding (588/1353 nt)	PP_0887	sensor histidine kinase
	?	NC_002947	1030592 =	53 (1.060)					coding (650/1353 nt)	PP_0887	sensor histidine kinase
*	?	NC_002947	= 1036529	44 (0.810)	4 (0.080)	4/242	NT	8.5%	coding (234/591 nt)	PP_0895	hypothetical protein
	?	NC_002947	= 1036556	45 (0.890)					coding (261/591 nt)	PP_0895	hypothetical protein
*	?	NC_002947	1068630 =	53 (0.980)	4 (0.080)	4/254	NT	7.0%	coding (796/948 nt)	PP_0926	membrane protein
	?	NC_002947	1068675 =	54 (1.020)					coding (841/948 nt)	PP_0926	membrane protein
*	?	NC_002947	1070679 =	50 (0.920)	5 (0.100)	5/248	NT	8.3%	coding (707/1044 nt)	PP_0928	K+‑dependent Na+/Ca+ exchanger‑like protein
	?	NC_002947	1070756 =	63 (1.220)					coding (630/1044 nt)	PP_0928	K+‑dependent Na+/Ca+ exchanger‑like protein
*	?	NC_002947	1090249 =	61 (1.130)	3 (0.060)	3/248	NT	5.5%	coding (1110/1380 nt)	fumC‑I	class 2 fumarate hydratase
	?	NC_002947	1090289 =	44 (0.850)					coding (1150/1380 nt)	fumC‑I	class 2 fumarate hydratase
*	?	NC_002947	= 1092152	59 (1.090)	3 (0.060)	3/246	NT	5.3%	coding (535/909 nt)	PP_0947	membrane protein
	?	NC_002947	= 1092194	52 (1.020)					coding (577/909 nt)	PP_0947	membrane protein
*	?	NC_002947	1101478 =	61 (1.130)	3 (0.060)	3/246	NT	5.1%	coding (59/486 nt)	mlaD	phospholipid ABC transporter substrate‑binding protein
	?	NC_002947	1101532 =	54 (1.060)					coding (113/486 nt)	mlaD	phospholipid ABC transporter substrate‑binding protein
*	?	NC_002947	1105890 =	62 (1.150)	4 (0.080)	3/248	NT	6.2%	coding (370/1326 nt)	hisD	histidinol dehydrogenase
	?	NC_002947	1105924 =	62 (1.200)					coding (404/1326 nt)	hisD	histidinol dehydrogenase
*	?	NC_002947	1114870 =	48 (0.890)	5 (0.110)	7/210	NT	12.4%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114946 =	32 (0.730)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	1136268 =	67 (1.240)	3 (0.060)	3/246	NT	5.1%	coding (707/1509 nt)	PP_0997	sigma‑54 dependent transcriptional regulator/sensory box protein
	?	NC_002947	1136319 =	49 (0.960)					coding (656/1509 nt)	PP_0997	sigma‑54 dependent transcriptional regulator/sensory box protein
*	?	NC_002947	= 1149926	65 (1.200)	9 (0.170) +C	6/258	NT	14.5%	intergenic (‑173/+84)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	2071168 =	42 (0.780)					intergenic (+120/+107)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	1151173 =	53 (0.980)	5 (0.100)	5/248	NT	10.9%	intergenic (‑162/‑103)	gapA/edd	glyceraldehyde‑3‑phosphate dehydrogenase/phosphogluconate dehydratase
	?	NC_002947	1151229 =	31 (0.600)					intergenic (‑218/‑47)	gapA/edd	glyceraldehyde‑3‑phosphate dehydrogenase/phosphogluconate dehydratase
*	?	NC_002947	1190570 =	36 (0.670)	3 (0.060)	3/248	NT	7.2%	coding (92/966 nt)	xcpX	type II secretion system protein K
	?	NC_002947	1190631 =	43 (0.830)					coding (153/966 nt)	xcpX	type II secretion system protein K
*	?	NC_002947	= 1216282	49 (0.910)	3 (0.060)	3/240	NT	5.6%	coding (677/4305 nt)	PP_1061	ATP‑dependent DNA helicase
	?	NC_002947	= 1216314	56 (1.120)					coding (645/4305 nt)	PP_1061	ATP‑dependent DNA helicase
*	?	NC_002947	= 1235224	52 (0.960)	3 (0.060)	3/246	NT	5.6%	coding (62/1500 nt)	glpK	glycerol kinase
	?	NC_002947	= 1235248	52 (1.020)					coding (38/1500 nt)	glpK	glycerol kinase
*	?	NC_002947	1238554 =	56 (1.040)	3 (0.060)	3/252	NT	5.1%	coding (472/921 nt)	argF	ornithine carbamoyltransferase
	?	NC_002947	1238584 =	57 (1.090)					coding (442/921 nt)	argF	ornithine carbamoyltransferase
*	?	NC_002947	= 1260815	56 (1.040)	4 (0.080)	4/244	NT	7.6%	coding (636/2451 nt)	PP_1103	DEAD box family ATP‑dependent helicase
	?	NC_002947	= 1260846	45 (0.890)					coding (605/2451 nt)	PP_1103	DEAD box family ATP‑dependent helicase
*	?	NC_002947	= 1267894	44 (0.810)	5 (0.090)	5/254	NT	10.2%	coding (94/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
	?	NC_002947	= 1267936	45 (0.850)					coding (52/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
*	?	NC_002947	1296784 =	NA (NA)	3 (0.060)	3/246	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1320342	65 (1.200)	6 (0.120)	6/248	NT	9.5%	coding (2389/2586 nt)	PP_1154	sensory box protein
	?	NC_002947	= 1320375	53 (1.030)					coding (2356/2586 nt)	PP_1154	sensory box protein
*	?	NC_002947	1332444 =	70 (1.290)	4 (0.080)	3/242	NT	6.1%	intergenic (+25/‑1231)	PP_1157/PP_1159	acetolactate synthase/membrane protein
	?	NC_002947	1332485 =	57 (1.130)					intergenic (+66/‑1190)	PP_1157/PP_1159	acetolactate synthase/membrane protein
*	?	NC_002947	= 1340110	63 (1.160)	7 (0.140)	4/244	NT	10.0%	coding (681/897 nt)	PP_1164	LysR family transcriptional regulator
	?	NC_002947	= 1340133	67 (1.320)					coding (704/897 nt)	PP_1164	LysR family transcriptional regulator
*	?	NC_002947	= 1365283	66 (1.220)	4 (0.080)	4/242	NT	6.4%	coding (195/699 nt)	PP_1189	hypothetical protein
	?	NC_002947	= 1365320	56 (1.110)					coding (158/699 nt)	PP_1189	hypothetical protein
*	?	NC_002947	1383831 =	50 (0.920)	3 (0.060)	3/248	NT	5.2%	coding (1200/1716 nt)	proS	proline‑‑tRNA ligase
	?	NC_002947	1383898 =	61 (1.180)					coding (1133/1716 nt)	proS	proline‑‑tRNA ligase
*	?	NC_002947	= 1419549	25 (0.460)	17 (0.320)	15/254	NT	43.4%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	20 (0.380)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1419549 =	25 (0.460)	5 (0.120)	4/202	NT	21.6%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419637 =	17 (0.410)					intergenic (‑126/+10)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1425073 =	52 (0.960)	6 (0.120)	5/248	NT	9.5%	coding (294/768 nt)	PP_1248	LysE family transporter
	?	NC_002947	1425134 =	65 (1.260)					coding (233/768 nt)	PP_1248	LysE family transporter
*	?	NC_002947	1473176 =	52 (0.960)	3 (0.060)	3/248	NT	5.7%	coding (1045/1317 nt)	algD	GDP‑mannose 6‑dehydrogenase
	?	NC_002947	1473220 =	50 (0.970)					coding (1001/1317 nt)	algD	GDP‑mannose 6‑dehydrogenase
*	?	NC_002947	= 1485867	34 (0.630)	5 (0.100)	5/242	NT	12.0%	coding (756/1098 nt)	yhdY	amino acid ABC transporter permease
	?	NC_002947	= 1485897	42 (0.830)					coding (786/1098 nt)	yhdY	amino acid ABC transporter permease
*	?	NC_002947	1499436 =	44 (0.810)	12 (0.240)	6/240	NT	30.5%	intergenic (+13/‑151)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	1499517 =	14 (0.280)					intergenic (+94/‑70)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	1507992 =	58 (1.070)	3 (0.060)	3/250	NT	5.7%	coding (393/462 nt)	sspB	ClpXP protease specificity‑enhancing factor
	?	NC_002947	1508041 =	43 (0.830)					coding (442/462 nt)	sspB	ClpXP protease specificity‑enhancing factor
*	?	NC_002947	= 1524974	47 (0.870)	7 (0.140)	6/244	NT	13.2%	coding (606/1449 nt)	murC	UDP‑N‑acetylmuramate‑‑L‑alanine ligase
	?	NC_002947	= 1524995	48 (0.950)					coding (627/1449 nt)	murC	UDP‑N‑acetylmuramate‑‑L‑alanine ligase
*	?	NC_002947	= 1531769	21 (0.390)	5 (0.110)	3/212	NT	15.8%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531817	36 (0.820)					coding (59/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	1538420 =	67 (1.240)	4 (0.080)	4/250	NT	6.2%	coding (118/567 nt)	pduO	ATP:cob(I)alamin adenosyltransferase
	?	NC_002947	1538452 =	57 (1.100)					coding (86/567 nt)	pduO	ATP:cob(I)alamin adenosyltransferase
*	?	NC_002947	1541575 =	59 (1.090)	5 (0.100)	5/242	NT	8.2%	intergenic (‑51/‑50)	panE/PP_1352	2‑dehydropantoate 2‑reductase/hypothetical protein
	?	NC_002947	1541605 =	57 (1.130)					intergenic (‑81/‑20)	panE/PP_1352	2‑dehydropantoate 2‑reductase/hypothetical protein
*	?	NC_002947	= 1543831	72 (1.330)	4 (0.080)	4/248	NT	5.8%	coding (635/1245 nt)	mdfA	multidrug MFS transporter
	?	NC_002947	= 1543880	62 (1.200)					coding (684/1245 nt)	mdfA	multidrug MFS transporter
*	?	NC_002947	= 1566935	42 (0.780)	3 (0.060)	3/242	NT	6.3%	coding (615/876 nt)	pcaR	pca regulon transcriptional regulator
	?	NC_002947	= 1566982	50 (0.990)					coding (662/876 nt)	pcaR	pca regulon transcriptional regulator
*	?	NC_002947	1574448 =	61 (1.130)	6 (0.120)	8/248	NT	9.4%	intergenic (+11/+42)	pcaC/pcaP	4‑carboxymuconolactone decarboxylase/porin
	?	NC_002947	1574480 =	58 (1.120)					intergenic (+43/+10)	pcaC/pcaP	4‑carboxymuconolactone decarboxylase/porin
*	?	NC_002947	= 1583197	68 (1.260)	6 (0.120)	6/248	NT	8.4%	coding (386/633 nt)	ttgR	HTH‑type transcriptional regulator TtgR
	?	NC_002947	= 1583211	66 (1.280)					coding (400/633 nt)	ttgR	HTH‑type transcriptional regulator TtgR
*	?	NC_002947	= 1589369	50 (0.920)	4 (0.080)	4/246	NT	6.9%	coding (158/1638 nt)	PP_1394	acetolactate synthase large subunit
	?	NC_002947	= 1589401	61 (1.190)					coding (190/1638 nt)	PP_1394	acetolactate synthase large subunit
*	?	NC_002947	= 1616074	59 (1.090)	4 (0.080)	4/250	NT	6.2%	coding (1185/1515 nt)	PP_1416	tricarboxylate transport protein TctA
	?	NC_002947	= 1616109	65 (1.250)					coding (1150/1515 nt)	PP_1416	tricarboxylate transport protein TctA
*	?	NC_002947	= 1616576	72 (1.330)	6 (0.110)	6/252	NT	8.1%	coding (683/1515 nt)	PP_1416	tricarboxylate transport protein TctA
	?	NC_002947	= 1616617	66 (1.260)					coding (642/1515 nt)	PP_1416	tricarboxylate transport protein TctA
*	?	NC_002947	1617758 =	54 (1.000)	3 (0.070)	3/222	NT	7.7%	intergenic (‑13/+160)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC
	?	NC_002947	1617897 =	26 (0.560)					intergenic (‑152/+21)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC
*	?	NC_002947	= 1624284	46 (0.850)	3 (0.060)	3/250	NT	6.3%	coding (64/942 nt)	PP_1423	hypothetical protein
	?	NC_002947	= 1624302	45 (0.870)					coding (46/942 nt)	PP_1423	hypothetical protein
*	?	NC_002947	= 1727994	44 (0.810)	3 (0.060)	3/252	NT	6.3%	coding (170/2487 nt)	plsB	glycerol‑3‑phosphate acyltransferase
	?	NC_002947	= 1728053	47 (0.900)					coding (111/2487 nt)	plsB	glycerol‑3‑phosphate acyltransferase
*	?	NC_002947	= 1745775	54 (1.000)	4 (0.080)	4/248	NT	6.7%	intergenic (‑15/+304)	PP_1543/PP_1544	hypothetical protein/hypothetical protein
	?	NC_002947	= 1745802	60 (1.160)					intergenic (‑42/+277)	PP_1543/PP_1544	hypothetical protein/hypothetical protein
*	?	NC_002947	1748726 =	61 (1.130)	3 (0.060)	3/248	NT	5.3%	intergenic (‑59/‑273)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
	?	NC_002947	= 4416405	49 (0.950)					coding (81/309 nt)	PP_3902	hypothetical protein
*	?	NC_002947	1750108 =	59 (1.090)	4 (0.080)	4/248	NT	6.0%	coding (128/852 nt)	PP_1549	Cro/CI family transcriptional regulator
	?	NC_002947	1750155 =	69 (1.340)					coding (81/852 nt)	PP_1549	Cro/CI family transcriptional regulator
*	?	NC_002947	1759848 =	79 (1.460)	5 (0.100)	5/246	NT	7.2%	coding (1011/1296 nt)	PP_1565	HK97 family portal protein
	?	NC_002947	1759910 =	54 (1.060)					coding (1073/1296 nt)	PP_1565	HK97 family portal protein
*	?	NC_002947	= 1760728	55 (1.020)	3 (0.060)	3/248	NT	5.3%	coding (599/702 nt)	PP_1566	peptidase U35
	?	NC_002947	= 1760754	54 (1.050)					coding (625/702 nt)	PP_1566	peptidase U35
*	?	NC_002947	= 1762690	64 (1.180)	4 (0.080)	4/248	NT	6.3%	coding (324/477 nt)	PP_1569	hypothetical protein
	?	NC_002947	= 1762715	57 (1.110)					coding (349/477 nt)	PP_1569	hypothetical protein
*	?	NC_002947	= 1763701	58 (1.070)	4 (0.080)	4/250	NT	7.4%	coding (43/369 nt)	PP_1572	hypothetical protein
	?	NC_002947	= 1763726	45 (0.870)					coding (68/369 nt)	PP_1572	hypothetical protein
*	?	NC_002947	1772976 =	78 (1.440)	4 (0.080)	4/244	NT	5.5%	coding (159/1992 nt)	PP_1581	BNR domain‑containing protein
	?	NC_002947	1773014 =	64 (1.260)					coding (197/1992 nt)	PP_1581	BNR domain‑containing protein
*	?	NC_002947	1776228 =	64 (1.180)	5 (0.100)	5/250	NT	7.2%	coding (304/477 nt)	PP_1583	structural protein P5
	?	NC_002947	1776261 =	68 (1.310)					coding (337/477 nt)	PP_1583	structural protein P5
*	?	NC_002947	1798399 =	38 (0.700)	3 (0.060)	3/242	NT	7.5%	coding (322/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798455 =	39 (0.780)					coding (378/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
*	?	NC_002947	= 1799062	45 (0.830)	3 (0.060)	3/246	NT	6.3%	coding (985/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	= 1799086	46 (0.900)					coding (1009/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
*	?	NC_002947	1832798 =	56 (1.040)	5 (0.100)	5/250	NT	8.2%	coding (63/366 nt)	dgkA‑I	diacylglycerol kinase
	?	NC_002947	1832848 =	58 (1.120)					coding (113/366 nt)	dgkA‑I	diacylglycerol kinase
*	?	NC_002947	1843013 =	48 (0.890)	6 (0.120)	4/246	NT	11.6%	coding (1781/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	1843050 =	46 (0.900)					coding (1744/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	1844134 =	4 (0.070)	56 (1.080)	50/250	NT	67.5%	coding (660/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 2179376	50 (0.960)					intergenic (+175/+93)	PP_1931/PP_5486	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1844137	4 (0.070)	65 (1.240)	55/252	NT	72.3%	coding (657/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2177702 =	46 (0.880)					intergenic (+103/‑63)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein
*	?	NC_002947	1852117 =	46 (0.850)	3 (0.060)	3/252	NT	7.4%	coding (1203/2241 nt)	relA	ATP:GTP 3'‑pyrophosphotransferase
	?	NC_002947	1852191 =	31 (0.590)					coding (1277/2241 nt)	relA	ATP:GTP 3'‑pyrophosphotransferase
*	?	NC_002947	= 1878847	51 (0.940)	4 (0.080)	4/252	NT	7.4%	coding (969/1221 nt)	PP_1684	transporter
	?	NC_002947	= 1878915	50 (0.950)					coding (1037/1221 nt)	PP_1684	transporter
*	?	NC_002947	1880920 =	68 (1.260)	3 (0.060)	3/246	NT	5.1%	coding (594/930 nt)	PP_1688	LysR family transcriptional regulator
	?	NC_002947	1880970 =	47 (0.920)					coding (644/930 nt)	PP_1688	LysR family transcriptional regulator
*	?	NC_002947	1887956 =	58 (1.070)	3 (0.060)	3/250	NT	5.8%	coding (2317/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
	?	NC_002947	1888001 =	42 (0.810)					coding (2272/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 1941999	51 (0.940)	3 (0.060)	3/244	NT	6.4%	coding (541/864 nt)	betX	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
	?	NC_002947	= 1942046	40 (0.790)					coding (588/864 nt)	betX	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
*	?	NC_002947	= 1955565	67 (1.240)	5 (0.100)	5/250	NT	6.9%	coding (203/975 nt)	PP_1753	DMT superfamily permease
	?	NC_002947	= 1955597	70 (1.350)					coding (235/975 nt)	PP_1753	DMT superfamily permease
*	?	NC_002947	= 1958608	57 (1.050)	4 (0.080)	4/246	NT	6.8%	coding (456/1395 nt)	fumC‑II	class 2 fumarate hydratase
	?	NC_002947	= 1958628	55 (1.080)					coding (436/1395 nt)	fumC‑II	class 2 fumarate hydratase
*	?	NC_002947	1967145 =	25 (0.460)	4 (0.100)	4/194	NT	17.9%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967241 =	18 (0.450)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	1971348 =	50 (0.920)	4 (0.080)	4/252	NT	7.8%	coding (277/2772 nt)	gyrA	DNA gyrase subunit A
	?	NC_002947	1971393 =	46 (0.880)					coding (322/2772 nt)	gyrA	DNA gyrase subunit A
*	?	NC_002947	1977647 =	69 (1.280)	3 (0.060)	3/244	NT	5.5%	coding (1311/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1977733 =	39 (0.770)					coding (1397/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
*	?	NC_002947	= 2054923	50 (0.920)	3 (0.060)	3/246	NT	5.9%	coding (64/1092 nt)	aroC	chorismate synthase
	?	NC_002947	= 2054952	48 (0.940)					coding (93/1092 nt)	aroC	chorismate synthase
*	?	NC_002947	= 2075067	50 (0.920)	4 (0.080)	4/244	NT	7.6%	coding (312/1188 nt)	ygaY	transporter YgaY
	?	NC_002947	= 2075102	50 (0.990)					coding (277/1188 nt)	ygaY	transporter YgaY
*	?	NC_002947	2076009 =	57 (1.050)	4 (0.080)	3/246	NT	6.3%	coding (525/879 nt)	PP_5479	LysR family transcriptional regulator
	?	NC_002947	2076057 =	65 (1.270)					coding (573/879 nt)	PP_5479	LysR family transcriptional regulator
*	?	NC_002947	= 2085883	8 (0.150)	5 (0.090)	4/254	NT	39.0%	intergenic (+592/‑3)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2413187	NA (NA)					coding (31/1302 nt)	PP_2114	transposase
*	?	NC_002947	2086243 =	NA (NA)	3 (0.060)	3/244	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2086305 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	2239668 =	49 (0.910)	3 (0.060)	3/250	NT	6.1%	coding (69/1164 nt)	PP_1976	HlyD family secretion protein
	?	NC_002947	2239702 =	45 (0.870)					coding (35/1164 nt)	PP_1976	HlyD family secretion protein
*	?	NC_002947	= 2242860	53 (0.980)	3 (0.060)	3/250	NT	5.3%	coding (433/540 nt)	PP_1978	TetR family transcriptional regulator
	?	NC_002947	= 2242892	56 (1.080)					coding (465/540 nt)	PP_1978	TetR family transcriptional regulator
*	?	NC_002947	= 2274392	45 (0.830)	5 (0.100)	5/248	NT	10.0%	coding (1098/1119 nt)	PP_2005	hypothetical protein
	?	NC_002947	= 2274462	47 (0.910)					coding (1028/1119 nt)	PP_2005	hypothetical protein
*	?	NC_002947	2281454 =	63 (1.160)	3 (0.060)	3/240	NT	5.3%	coding (276/894 nt)	PP_2009	1‑aminocyclopropane‑1‑carboxylate deaminase
	?	NC_002947	2281504 =	50 (1.000)					coding (326/894 nt)	PP_2009	1‑aminocyclopropane‑1‑carboxylate deaminase
*	?	NC_002947	2295506 =	51 (0.940)	4 (0.080)	4/250	NT	7.9%	intergenic (+51/‑72)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
	?	NC_002947	2295569 =	44 (0.850)					intergenic (+114/‑9)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
*	?	NC_002947	2297159 =	40 (0.740)	3 (0.060)	3/246	NT	7.5%	coding (2963/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	2297208 =	36 (0.700)					coding (2914/3645 nt)	sbcC	exonuclease subunit SbcC
*	?	NC_002947	= 2297165	43 (0.800)	8 (0.160)	7/246	NT	17.3%	coding (2957/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	= 2297200	36 (0.700)					coding (2922/3645 nt)	sbcC	exonuclease subunit SbcC
*	?	NC_002947	2299637 =	45 (0.830)	3 (0.060)	3/250	NT	6.0%	coding (485/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	2299677 =	50 (0.960)					coding (445/3645 nt)	sbcC	exonuclease subunit SbcC
*	?	NC_002947	2301453 =	0 (0.000)	50 (0.950)	45/254	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	31 (0.580)	27/256	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	2301496 =	20 (0.370)	7 (0.150)	7/232	NT	20.6%	intergenic (‑140/‑191)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2301581 =	36 (0.750)					intergenic (‑225/‑106)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	= 2304671	72 (1.330)	4 (0.080)	3/250	NT	5.7%	coding (171/1632 nt)	PP_2027	hypothetical protein
	?	NC_002947	= 2304705	64 (1.230)					coding (137/1632 nt)	PP_2027	hypothetical protein
*	?	NC_002947	= 2307870	45 (0.830)	3 (0.060)	3/252	NT	6.4%	coding (247/495 nt)	PP_2030	hypothetical protein
	?	NC_002947	= 2307899	44 (0.840)					coding (218/495 nt)	PP_2030	hypothetical protein
*	?	NC_002947	= 2308477	46 (0.850)	3 (0.060)	3/246	NT	6.2%	coding (593/957 nt)	PP_2031	hypothetical protein
	?	NC_002947	= 2308521	48 (0.940)					coding (549/957 nt)	PP_2031	hypothetical protein
*	?	NC_002947	2310206 =	40 (0.740)	3 (0.060)	3/238	NT	7.4%	intergenic (‑185/‑44)	PP_2032/PP_2033	ATPase/hypothetical protein
	?	NC_002947	2310277 =	39 (0.790)					coding (28/1311 nt)	PP_2033	hypothetical protein
*	?	NC_002947	= 2310301	47 (0.870)	4 (0.080)	4/240	NT	8.3%	coding (52/1311 nt)	PP_2033	hypothetical protein
	?	NC_002947	= 2310362	45 (0.900)					coding (113/1311 nt)	PP_2033	hypothetical protein
*	?	NC_002947	2323366 =	54 (1.000)	3 (0.060)	3/240	NT	5.9%	coding (54/1329 nt)	PP_2043	hypothetical protein
	?	NC_002947	2323427 =	46 (0.920)					coding (115/1329 nt)	PP_2043	hypothetical protein
*	?	NC_002947	= 2326433	37 (0.680)	5 (0.100)	4/246	NT	12.2%	coding (871/1962 nt)	PP_2045	metallo‑beta‑lactamase family protein
	?	NC_002947	= 2326453	37 (0.720)					coding (851/1962 nt)	PP_2045	metallo‑beta‑lactamase family protein
*	?	NC_002947	2338988 =	45 (0.830)	4 (0.080)	4/248	NT	8.6%	coding (781/1080 nt)	PP_2055	isomerase
	?	NC_002947	2339036 =	42 (0.810)					coding (829/1080 nt)	PP_2055	isomerase
*	?	NC_002947	2349562 =	54 (1.000)	3 (0.060)	3/246	NT	5.2%	coding (1769/3084 nt)	PP_2065	multidrug RND transporter
	?	NC_002947	2349617 =	58 (1.130)					coding (1824/3084 nt)	PP_2065	multidrug RND transporter
*	?	NC_002947	2359480 =	35 (0.650)	4 (0.080)	3/246	NT	10.2%	coding (438/924 nt)	PP_2074	LysR family transcriptional regulator
	?	NC_002947	2359529 =	37 (0.720)					coding (487/924 nt)	PP_2074	LysR family transcriptional regulator
*	?	NC_002947	2404685 =	29 (0.540)	5 (0.100)	5/246	NT	13.1%	coding (30/240 nt)	PP_2107	hypothetical protein
	?	NC_002947	2404717 =	39 (0.760)					coding (62/240 nt)	PP_2107	hypothetical protein
*	?	NC_002947	2417322 =	41 (0.760)	4 (0.080)	4/248	NT	8.7%	coding (357/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
	?	NC_002947	2417357 =	45 (0.870)					coding (392/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	2457387 =	59 (1.090)	3 (0.060)	3/246	NT	5.3%	coding (458/999 nt)	PP_2150	thiamine biosynthesis lipoprotein
	?	NC_002947	2457425 =	52 (1.020)					coding (496/999 nt)	PP_2150	thiamine biosynthesis lipoprotein
*	?	NC_002947	2470880 =	48 (0.890)	3 (0.060)	3/242	NT	6.3%	coding (445/1182 nt)	PP_2165	two‑component system response regulator
	?	NC_002947	2470925 =	45 (0.890)					coding (490/1182 nt)	PP_2165	two‑component system response regulator
*	?	NC_002947	2472339 =	38 (0.700)	4 (0.080)	4/246	NT	9.2%	coding (1757/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	2472389 =	43 (0.840)					coding (1707/1851 nt)	PP_2167	PhoD‑like phosphatase
*	?	NC_002947	= 2472345	38 (0.700)	3 (0.060)	3/246	NT	7.1%	coding (1751/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	= 2472381	43 (0.840)					coding (1715/1851 nt)	PP_2167	PhoD‑like phosphatase
*	?	NC_002947	2496018 =	56 (1.040)	4 (0.080)	4/248	NT	7.3%	coding (139/264 nt)	PP_2190	hypothetical protein
	?	NC_002947	2496055 =	48 (0.930)					coding (176/264 nt)	PP_2190	hypothetical protein
*	?	NC_002947	2497909 =	32 (0.590)	4 (0.080)	4/238	NT	8.6%	intergenic (+10/‑191)	PP_2192/PP_2193	ECF family RNA polymerase sigma‑70 factor/transmembrane sensor protein/ferric siderophore receptor
	?	NC_002947	2498007 =	56 (1.130)					intergenic (+108/‑93)	PP_2192/PP_2193	ECF family RNA polymerase sigma‑70 factor/transmembrane sensor protein/ferric siderophore receptor
*	?	NC_002947	= 2502274	59 (1.090)	3 (0.060)	3/250	NT	5.4%	coding (713/1089 nt)	PP_2195	putrescine‑binding protein
	?	NC_002947	= 2502317	49 (0.940)					coding (756/1089 nt)	PP_2195	putrescine‑binding protein
*	?	NC_002947	= 2558475	58 (1.070)	4 (0.080)	4/248	NT	7.1%	coding (735/2235 nt)	fepA	ferric enterobactin transport system outer membrane subunit
	?	NC_002947	= 2558511	49 (0.950)					coding (771/2235 nt)	fepA	ferric enterobactin transport system outer membrane subunit
*	?	NC_002947	= 2574347	43 (0.800)	5 (0.100)	5/248	NT	10.3%	coding (1103/1566 nt)	PP_2257	aerotaxis receptor
	?	NC_002947	= 2574385	46 (0.890)					coding (1141/1566 nt)	PP_2257	aerotaxis receptor
*	?	NC_002947	= 2574487	66 (1.220)	4 (0.080)	4/246	NT	5.8%	coding (1243/1566 nt)	PP_2257	aerotaxis receptor
	?	NC_002947	= 2574542	68 (1.330)					coding (1298/1566 nt)	PP_2257	aerotaxis receptor
*	?	NC_002947	2591383 =	62 (1.150)	4 (0.080)	4/250	NT	6.4%	coding (299/450 nt)	PP_2269	N‑acetylmuramoyl‑L‑alanine amidase
	?	NC_002947	2591422 =	58 (1.120)					coding (338/450 nt)	PP_2269	N‑acetylmuramoyl‑L‑alanine amidase
*	?	NC_002947	2625928 =	26 (0.480)	3 (0.060)	3/244	NT	11.2%	intergenic (+106/‑194)	PP_2297/PP_t40	integrase/tRNA‑His
	?	NC_002947	2625963 =	23 (0.450)					intergenic (+141/‑159)	PP_2297/PP_t40	integrase/tRNA‑His
*	?	NC_002947	= 2658287	46 (0.850)	4 (0.080)	4/248	NT	8.1%	coding (514/981 nt)	PP_2330	hypothetical protein
	?	NC_002947	= 2658316	47 (0.910)					coding (485/981 nt)	PP_2330	hypothetical protein
*	?	NC_002947	= 2707265	40 (0.740)	4 (0.080)	3/246	NT	8.6%	coding (308/495 nt)	PP_2370	hypothetical protein
	?	NC_002947	= 2707336	47 (0.920)					coding (237/495 nt)	PP_2370	hypothetical protein
*	?	NC_002947	2711295 =	48 (0.890)	3 (0.060)	3/254	NT	6.1%	intergenic (‑42/+101)	PP_2374/metH	hypothetical protein/cobalamin‑dependent methionine synthase
	?	NC_002947	2711385 =	46 (0.870)					intergenic (‑132/+11)	PP_2374/metH	hypothetical protein/cobalamin‑dependent methionine synthase
*	?	NC_002947	2729599 =	34 (0.630)	4 (0.080)	4/244	NT	11.0%	coding (46/1044 nt)	PP_2392	MFS transporter
	?	NC_002947	2729650 =	33 (0.650)					coding (97/1044 nt)	PP_2392	MFS transporter
*	?	NC_002947	= 2753358	63 (1.160)	4 (0.080)	4/248	NT	6.0%	coding (915/1215 nt)	czcB‑II	cobalt‑zinc‑cadmium resistance protein
	?	NC_002947	= 2753402	66 (1.280)					coding (959/1215 nt)	czcB‑II	cobalt‑zinc‑cadmium resistance protein
*	?	NC_002947	2757781 =	53 (0.980)	3 (0.060)	3/242	NT	5.9%	coding (411/1338 nt)	PP_2411	MFS transporter
	?	NC_002947	2757851 =	46 (0.910)					coding (341/1338 nt)	PP_2411	MFS transporter
*	?	NC_002947	= 2773525	44 (0.810)	3 (0.060)	3/238	NT	6.9%	coding (529/1053 nt)	calA	coniferyl alcohol dehydrogenase
	?	NC_002947	= 2773551	41 (0.830)					coding (555/1053 nt)	calA	coniferyl alcohol dehydrogenase
*	?	NC_002947	2791195 =	58 (1.070)	3 (0.060)	3/244	NT	5.9%	coding (353/1212 nt)	sstT	serine/threonine transporter SstT
	?	NC_002947	2791237 =	42 (0.830)					coding (311/1212 nt)	sstT	serine/threonine transporter SstT
*	?	NC_002947	2827930 =	52 (0.960)	6 (0.120)	5/250	NT	11.1%	coding (106/1209 nt)	PP_2480	xanthine dehydrogenase accessory factor
	?	NC_002947	2827968 =	46 (0.880)					coding (144/1209 nt)	PP_2480	xanthine dehydrogenase accessory factor
*	?	NC_002947	2855059 =	39 (0.720)	3 (0.060)	3/250	NT	7.8%	intergenic (+109/+63)	PP_2507/PP_5532	short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein
	?	NC_002947	2855106 =	33 (0.630)					intergenic (+156/+16)	PP_2507/PP_5532	short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein
*	?	NC_002947	2873269 =	51 (0.940)	4 (0.080)	4/254	NT	7.3%	coding (49/474 nt)	cigR	membrane protein
	?	NC_002947	2873374 =	52 (0.980)					coding (154/474 nt)	cigR	membrane protein
*	?	NC_002947	2897517 =	43 (0.800)	5 (0.100)	4/246	NT	11.3%	coding (836/945 nt)	PP_2551	LysR family transcriptional regulator
	?	NC_002947	2897553 =	38 (0.740)					coding (872/945 nt)	PP_2551	LysR family transcriptional regulator
*	?	NC_002947	2900970 =	51 (0.940)	5 (0.100)	5/246	NT	9.2%	coding (52/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	2901018 =	51 (1.000)					coding (100/1908 nt)	quiC	3‑dehydroshikimate dehydratase
*	?	NC_002947	2903987 =	37 (0.680)	3 (0.060)	3/248	NT	7.9%	coding (941/1353 nt)	PP_2556	chromate transporter
	?	NC_002947	2904037 =	35 (0.680)					coding (891/1353 nt)	PP_2556	chromate transporter
*	?	NC_002947	= 2914562	45 (0.830)	4 (0.080)	4/250	NT	8.6%	coding (3582/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	= 2914625	42 (0.810)					coding (3645/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	= 2923293	48 (0.890)	3 (0.060)	3/244	NT	6.5%	coding (1960/2772 nt)	PP_2563	antibiotic biosynthesis protein
	?	NC_002947	= 2923329	42 (0.830)					coding (1924/2772 nt)	PP_2563	antibiotic biosynthesis protein
*	?	NC_002947	2931543 =	60 (1.110)	3 (0.060)	3/244	NT	5.8%	coding (2559/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein
	?	NC_002947	2931600 =	42 (0.830)					coding (2502/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 2974744	50 (0.920)	6 (0.120)	6/246	NT	11.3%	coding (677/777 nt)	PP_2601	IclR family transcriptional regulator
	?	NC_002947	= 2974769	47 (0.920)					coding (702/777 nt)	PP_2601	IclR family transcriptional regulator
*	?	NC_002947	2976103 =	47 (0.870)	4 (0.080)	3/250	NT	7.9%	coding (39/816 nt)	PP_2603	hypothetical protein
	?	NC_002947	2976148 =	48 (0.920)					coding (84/816 nt)	PP_2603	hypothetical protein
*	?	NC_002947	2986678 =	32 (0.590)	5 (0.100)	3/242	NT	13.4%	coding (1721/2991 nt)	PP_2612	membrane protein
	?	NC_002947	2986778 =	35 (0.700)					coding (1621/2991 nt)	PP_2612	membrane protein
*	?	NC_002947	= 3005856	33 (0.610)	3 (0.060)	3/248	NT	8.4%	coding (2437/3621 nt)	PP_2627	membrane protein
	?	NC_002947	= 3005889	34 (0.660)					coding (2470/3621 nt)	PP_2627	membrane protein
*	?	NC_002947	3011368 =	43 (0.800)	4 (0.080)	3/246	NT	9.3%	coding (429/1614 nt)	bcsG	endoglucanase
	?	NC_002947	3011486 =	37 (0.720)					coding (547/1614 nt)	bcsG	endoglucanase
*	?	NC_002947	= 3013870	28 (0.520)	3 (0.060)	3/246	NT	8.8%	coding (402/2610 nt)	bcsA	cellulose synthase and translocator subunit
	?	NC_002947	= 3013900	36 (0.700)					coding (432/2610 nt)	bcsA	cellulose synthase and translocator subunit
*	?	NC_002947	3020517 =	52 (0.960)	4 (0.080)	4/248	NT	7.1%	coding (1055/3519 nt)	PP_2638	cellulose synthase operon protein C
	?	NC_002947	3020547 =	55 (1.070)					coding (1085/3519 nt)	PP_2638	cellulose synthase operon protein C
*	?	NC_002947	3077686 =	61 (1.130)	5 (0.100)	4/248	NT	9.4%	coding (167/951 nt)	PP_2687	hypothetical protein
	?	NC_002947	3077751 =	38 (0.740)					coding (102/951 nt)	PP_2687	hypothetical protein
*	?	NC_002947	3123126 =	34 (0.630)	3 (0.060)	3/250	NT	9.0%	coding (561/888 nt)	PP_2740	MerR family transcriptional regulator
	?	NC_002947	3123164 =	28 (0.540)					coding (599/888 nt)	PP_2740	MerR family transcriptional regulator
*	?	NC_002947	= 3154121	29 (0.540)	4 (0.080)	4/244	NT	12.1%	coding (325/1326 nt)	PP_2770	hypothetical protein
	?	NC_002947	= 3154199	31 (0.610)					coding (403/1326 nt)	PP_2770	hypothetical protein
*	?	NC_002947	= 3183855	34 (0.630)	6 (0.110)	5/256	NT	12.8%	coding (343/768 nt)	PP_2794	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 3183915	48 (0.900)					coding (403/768 nt)	PP_2794	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	= 3221469	33 (0.610)	3 (0.060)	3/244	NT	8.7%	coding (1225/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 3221499	32 (0.630)					coding (1195/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
*	?	NC_002947	3243408 =	52 (0.960)	5 (0.100)	3/250	NT	10.3%	coding (1485/2289 nt)	PP_2839	hypothetical protein
	?	NC_002947	3243481 =	37 (0.710)					coding (1558/2289 nt)	PP_2839	hypothetical protein
*	?	NC_002947	3255679 =	48 (0.890)	4 (0.080)	4/248	NT	8.0%	coding (59/2202 nt)	PP_2852	sulfatase domain‑containing protein
	?	NC_002947	3255714 =	46 (0.890)					coding (24/2202 nt)	PP_2852	sulfatase domain‑containing protein
*	?	NC_002947	3394007 =	48 (0.890)	4 (0.080)	4/248	NT	8.2%	coding (400/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3394035 =	44 (0.850)					coding (372/900 nt)	PP_2997	protein CnmA
*	?	NC_002947	3394942 =	44 (0.810)	3 (0.060)	3/246	NT	6.3%	coding (443/948 nt)	PP_2998	2‑dehydropantoate 2‑reductase
	?	NC_002947	3394991 =	47 (0.920)					coding (492/948 nt)	PP_2998	2‑dehydropantoate 2‑reductase
*	?	NC_002947	= 3437057	41 (0.760)	4 (0.080)	4/240	NT	9.4%	coding (183/879 nt)	PP_3056	tail fiber protein
	?	NC_002947	= 3437081	39 (0.780)					coding (207/879 nt)	PP_3056	tail fiber protein
*	?	NC_002947	3445737 =	44 (0.810)	4 (0.080)	4/248	NT	9.5%	coding (131/1044 nt)	gpD	tail formation
	?	NC_002947	3445772 =	34 (0.660)					coding (166/1044 nt)	gpD	tail formation
*	?	NC_002947	3451941 =	61 (1.130)	3 (0.060)	3/252	NT	5.4%	coding (1506/2478 nt)	PP_3069	outer membrane autotransporter
	?	NC_002947	3451985 =	45 (0.860)					coding (1462/2478 nt)	PP_3069	outer membrane autotransporter
*	?	NC_002947	3460975 =	58 (1.070)	3 (0.060)	3/242	NT	5.5%	coding (400/1017 nt)	PP_3076	ABC transporter permease
	?	NC_002947	3461026 =	50 (0.990)					coding (349/1017 nt)	PP_3076	ABC transporter permease
*	?	NC_002947	3472582 =	60 (1.110)	5 (0.100)	5/248	NT	8.6%	intergenic (‑51/+57)	PP_3084/PP_3085	ferric siderophore receptor/transmembrane sensor
	?	NC_002947	3472661 =	49 (0.950)					coding (944/966 nt)	PP_3085	transmembrane sensor
*	?	NC_002947	= 3474861	64 (1.180)	3 (0.060)	3/248	NT	5.1%	coding (1852/2517 nt)	PP_3087	excinuclease ABC subunit A
	?	NC_002947	= 3474897	51 (0.990)					coding (1816/2517 nt)	PP_3087	excinuclease ABC subunit A
*	?	NC_002947	= 3479266	55 (1.020)	3 (0.060)	3/248	NT	5.6%	coding (1953/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	= 3479310	49 (0.950)					coding (1909/2496 nt)	PP_3090	OmpA domain‑containing protein
*	?	NC_002947	3529386 =	58 (1.070)	3 (0.060)	3/246	NT	5.3%	coding (1203/3102 nt)	dnaEB	error‑prone DNA polymerase
	?	NC_002947	3529437 =	53 (1.040)					coding (1254/3102 nt)	dnaEB	error‑prone DNA polymerase
*	?	NC_002947	= 3552652	73 (1.350)	4 (0.080)	4/242	NT	5.4%	coding (309/978 nt)	PP_3137	group 2 family glycosyl transferase
	?	NC_002947	= 3552675	73 (1.450)					coding (332/978 nt)	PP_3137	group 2 family glycosyl transferase
*	?	NC_002947	3572354 =	48 (0.890)	4 (0.080)	4/246	NT	8.2%	coding (390/444 nt)	PP_3153	hypothetical protein
	?	NC_002947	3572384 =	44 (0.860)					coding (420/444 nt)	PP_3153	hypothetical protein
*	?	NC_002947	= 3582944	43 (0.800)	4 (0.080)	4/248	NT	9.4%	coding (1015/1359 nt)	benA	benzoate 1,2‑dioxygenase subunit alpha
	?	NC_002947	= 3582963	36 (0.700)					coding (1034/1359 nt)	benA	benzoate 1,2‑dioxygenase subunit alpha
*	?	NC_002947	3590864 =	41 (0.760)	4 (0.080)	3/244	NT	10.2%	coding (60/1080 nt)	PP_3169	membrane protein
	?	NC_002947	3590926 =	32 (0.630)					coding (122/1080 nt)	PP_3169	membrane protein
*	?	NC_002947	3601622 =	36 (0.670)	6 (0.120)	4/244	NT	12.4%	coding (339/1170 nt)	PP_3177	hypothetical protein
	?	NC_002947	3601705 =	51 (1.010)					coding (422/1170 nt)	PP_3177	hypothetical protein
*	?	NC_002947	3612448 =	43 (0.800)	4 (0.080)	4/254	NT	9.1%	coding (1236/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3612488 =	38 (0.720)					coding (1196/3396 nt)	mcoA	Mn(II) copper oxidase A
*	?	NC_002947	3642652 =	31 (0.570)	3 (0.060)	3/244	NT	8.7%	coding (553/1431 nt)	PP_3209	isoxanthopterin deaminase
	?	NC_002947	3642714 =	34 (0.670)					coding (491/1431 nt)	PP_3209	isoxanthopterin deaminase
*	?	NC_002947	3657855 =	38 (0.700)	4 (0.080)	4/242	NT	11.4%	coding (395/951 nt)	PP_3222	ABC transporter permease
	?	NC_002947	3657921 =	27 (0.540)					coding (329/951 nt)	PP_3222	ABC transporter permease
*	?	NC_002947	= 3672080	34 (0.630)	5 (0.100)	5/252	NT	11.5%	coding (131/393 nt)	PP_3235	hypothetical protein
	?	NC_002947	= 3672110	44 (0.840)					coding (161/393 nt)	PP_3235	hypothetical protein
*	?	NC_002947	= 3692123	51 (0.940)	3 (0.060)	3/250	NT	5.7%	coding (463/756 nt)	PP_3258	hypothetical protein
	?	NC_002947	= 3692183	51 (0.980)					coding (403/756 nt)	PP_3258	hypothetical protein
*	?	NC_002947	3692890 =	58 (1.070)	3 (0.060)	3/248	NT	5.2%	coding (736/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein
	?	NC_002947	3692924 =	53 (1.030)					coding (702/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein
*	?	NC_002947	= 3721625	44 (0.810)	3 (0.060)	3/246	NT	6.6%	coding (579/798 nt)	fnrC	Crp/Fnr family transcriptional regulator
	?	NC_002947	= 3721660	43 (0.840)					coding (544/798 nt)	fnrC	Crp/Fnr family transcriptional regulator
*	?	NC_002947	3755008 =	61 (1.130)	3 (0.060)	3/246	NT	5.1%	coding (449/2202 nt)	PP_3319	GGDEF domain‑containing sensory box protein
	?	NC_002947	3755055 =	53 (1.040)					coding (496/2202 nt)	PP_3319	GGDEF domain‑containing sensory box protein
*	?	NC_002947	= 3779161	47 (0.870)	4 (0.080)	4/246	NT	8.7%	coding (302/417 nt)	nikR	nickel‑responsive regulator
	?	NC_002947	= 3779202	40 (0.780)					coding (261/417 nt)	nikR	nickel‑responsive regulator
*	?	NC_002947	3820587 =	36 (0.670)	4 (0.080)	4/244	NT	10.7%	coding (678/966 nt)	endA	endonuclease I
	?	NC_002947	3820646 =	33 (0.650)					coding (737/966 nt)	endA	endonuclease I
*	?	NC_002947	3836707 =	58 (1.070)	3 (0.060)	3/248	NT	5.4%	coding (302/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	3836787 =	49 (0.950)					coding (382/2673 nt)	PP_3388	hypothetical protein
*	?	NC_002947	3860850 =	59 (1.090)	5 (0.100)	4/246	NT	8.1%	coding (401/615 nt)	PP_3412	LuxR family transcriptional regulator
	?	NC_002947	3860886 =	58 (1.130)					coding (437/615 nt)	PP_3412	LuxR family transcriptional regulator
*	?	NC_002947	= 3860856	60 (1.110)	5 (0.100)	4/246	NT	8.0%	coding (407/615 nt)	PP_3412	LuxR family transcriptional regulator
	?	NC_002947	= 3860878	58 (1.130)					coding (429/615 nt)	PP_3412	LuxR family transcriptional regulator
*	?	NC_002947	= 3882392	58 (1.070)	3 (0.060)	3/252	NT	5.2%	coding (1051/1416 nt)	oprN	multidrug RND transporter outer membrane protein OprN
	?	NC_002947	= 3882426	54 (1.030)					coding (1085/1416 nt)	oprN	multidrug RND transporter outer membrane protein OprN
*	?	NC_002947	3895661 =	54 (1.000)	5 (0.100)	5/246	NT	9.3%	coding (312/582 nt)	PP_3438	membrane protein
	?	NC_002947	3895697 =	47 (0.920)					coding (348/582 nt)	PP_3438	membrane protein
*	?	NC_002947	3904713 =	45 (0.830)	3 (0.060)	3/248	NT	6.7%	coding (30/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	3904749 =	41 (0.800)					intergenic (‑7/+4)	ilvA‑I/PP_mr42	threonine deaminase/P9 ncRNA
*	?	NC_002947	3951082 =	18 (0.330)	4 (0.070)	4/260	NT	8.1%	intergenic (‑46/+149)	PP_3486/PP_3487	cytochrome c/hypothetical protein
	?	NC_002947	= 5887082	73 (1.350)					intergenic (‑67/‑63)	PP_5161/PP_5162	lysophospholipase/hypothetical protein
*	?	NC_002947	= 3962988	40 (0.740)	5 (0.100)	5/238	NT	11.3%	intergenic (+34/+83)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator
	?	NC_002947	= 3963028	42 (0.850)					intergenic (+74/+43)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator
*	?	NC_002947	3969585 =	NA (NA)	7 (0.140)	6/246	NT	NA	coding (220/321 nt)	PP_3499	transposase
	?	NC_002947	3969623 =	NA (NA)					coding (258/321 nt)	PP_3499	transposase
*	?	NC_002947	3976609 =	52 (0.960)	4 (0.080)	4/246	NT	7.8%	coding (259/1014 nt)	PP_3506	magnesium chelatase subunit ChII
	?	NC_002947	3976684 =	45 (0.880)					coding (184/1014 nt)	PP_3506	magnesium chelatase subunit ChII
*	?	NC_002947	= 3987701	55 (1.020)	3 (0.060)	3/250	NT	5.5%	coding (219/2085 nt)	oplA	5‑oxoprolinase A
	?	NC_002947	= 3987739	51 (0.980)					coding (257/2085 nt)	oplA	5‑oxoprolinase A
*	?	NC_002947	3999919 =	49 (0.910)	4 (0.080)	4/252	NT	8.3%	coding (604/987 nt)	PP_3528	ABC transporter substrate‑binding protein
	?	NC_002947	3999964 =	41 (0.780)					coding (649/987 nt)	PP_3528	ABC transporter substrate‑binding protein
*	?	NC_002947	4000753 =	52 (0.960)	3 (0.060)	3/244	NT	6.6%	coding (435/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase
	?	NC_002947	4000806 =	36 (0.710)					coding (488/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase
*	?	NC_002947	= 4027684	37 (0.680)	5 (0.100)	5/246	NT	11.9%	coding (746/1407 nt)	PP_3552	two‑component system sensor histidine kinase
	?	NC_002947	= 4027698	39 (0.760)					coding (732/1407 nt)	PP_3552	two‑component system sensor histidine kinase
*	?	NC_002947	= 4030491	45 (0.830)	5 (0.100)	5/246	NT	9.1%	coding (154/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4030519	57 (1.110)					coding (182/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	= 4046537	66 (1.220)	4 (0.080)	4/244	NT	5.9%	coding (183/906 nt)	PP_3567	LysR family transcriptional regulator
	?	NC_002947	= 4046580	66 (1.300)					coding (140/906 nt)	PP_3567	LysR family transcriptional regulator
*	?	NC_002947	4054993 =	45 (0.830)	5 (0.100)	5/250	NT	10.7%	coding (224/393 nt)	PP_3574	hypothetical protein
	?	NC_002947	4055047 =	40 (0.770)					coding (278/393 nt)	PP_3574	hypothetical protein
*	?	NC_002947	= 4059281	39 (0.720)	3 (0.060)	3/238	NT	6.4%	coding (1618/1638 nt)	pgm	phosphoglucomutase
	?	NC_002947	= 4059323	52 (1.050)					coding (1576/1638 nt)	pgm	phosphoglucomutase
*	?	NC_002947	4079414 =	44 (0.810)	5 (0.110)	5/212	NT	12.5%	intergenic (‑218/+166)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	4079531 =	34 (0.770)					intergenic (‑335/+49)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
*	?	NC_002947	= 4082497	59 (1.090)	4 (0.080)	4/248	NT	6.5%	coding (442/924 nt)	PP_3592	RpiR family transcriptional regulator
	?	NC_002947	= 4082542	59 (1.140)					coding (487/924 nt)	PP_3592	RpiR family transcriptional regulator
*	?	NC_002947	= 4164704	37 (0.680)	5 (0.100)	5/240	NT	13.5%	intergenic (+54/+63)	PP_3665/PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
	?	NC_002947	= 4164732	30 (0.600)					intergenic (+82/+35)	PP_3665/PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
*	?	NC_002947	= 4167368	51 (0.940)	4 (0.080)	4/246	NT	6.5%	coding (108/1212 nt)	creA	creatinase
	?	NC_002947	= 4167395	66 (1.290)					coding (81/1212 nt)	creA	creatinase
*	?	NC_002947	4237457 =	57 (1.050)	3 (0.060)	3/250	NT	6.5%	coding (793/1122 nt)	catB	muconate cycloisomerase 1
	?	NC_002947	4237489 =	32 (0.620)					coding (761/1122 nt)	catB	muconate cycloisomerase 1
*	?	NC_002947	4266108 =	55 (1.020)	5 (0.100)	4/250	NT	8.9%	coding (351/714 nt)	PP_3738	transcriptional regulator VanR
	?	NC_002947	4266132 =	50 (0.960)					coding (327/714 nt)	PP_3738	transcriptional regulator VanR
*	?	NC_002947	4284707 =	64 (1.180)	4 (0.080)	4/242	NT	6.8%	coding (112/849 nt)	hbd	3‑hydroxybutyryl‑CoA dehydrogenase
	?	NC_002947	4284752 =	50 (0.990)					coding (157/849 nt)	hbd	3‑hydroxybutyryl‑CoA dehydrogenase
*	?	NC_002947	4298253 =	45 (0.830)	6 (0.120)	6/250	NT	13.0%	coding (39/354 nt)	PP_3769	hypothetical protein
	?	NC_002947	4298310 =	37 (0.710)					coding (96/354 nt)	PP_3769	hypothetical protein
*	?	NC_002947	4299561 =	47 (0.870)	3 (0.060)	3/248	NT	6.9%	coding (192/870 nt)	PP_3772	repressor protein‑like protein
	?	NC_002947	4299600 =	36 (0.700)					coding (231/870 nt)	PP_3772	repressor protein‑like protein
*	?	NC_002947	= 4316090	42 (0.780)	3 (0.060)	3/248	NT	6.3%	coding (173/1554 nt)	PP_3788	non‑ribosomal peptide synthetase
	?	NC_002947	= 4316107	49 (0.950)					coding (190/1554 nt)	PP_3788	non‑ribosomal peptide synthetase
*	?	NC_002947	4326196 =	55 (1.020)	3 (0.060)	3/246	NT	5.7%	coding (674/1335 nt)	pvdA	L‑ornithine 5‑monooxygenase
	?	NC_002947	4326233 =	48 (0.940)					coding (711/1335 nt)	pvdA	L‑ornithine 5‑monooxygenase
*	?	NC_002947	4337133 =	47 (0.870)	3 (0.060)	3/246	NT	7.2%	coding (82/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	4337186 =	33 (0.650)					coding (29/885 nt)	PP_3811	LysR family transcriptional regulator
*	?	NC_002947	= 4344235	49 (0.910)	6 (0.120)	6/248	NT	11.8%	coding (1115/1149 nt)	PP_3817	polyamine ABC transporter ATP‑binding protein
	?	NC_002947	= 4344251	43 (0.830)					coding (1131/1149 nt)	PP_3817	polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	= 4345879	25 (0.460)	3 (0.060)	3/246	NT	11.4%	coding (1213/1356 nt)	gor	glutathione reductase
	?	NC_002947	= 4345900	23 (0.450)					coding (1192/1356 nt)	gor	glutathione reductase
*	?	NC_002947	4347946 =	NA (NA)	7 (0.130)	4/252	NT	NA	coding (690/1422 nt)	PP_3820	group II intron‑encoding maturase
	?	NC_002947	4392248 =	NA (NA)					coding (767/1422 nt)	PP_3868	group II intron‑encoding maturase
*	?	NC_002947	= 4359680	44 (0.810)	4 (0.080)	4/246	NT	8.5%	coding (276/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	= 4359703	45 (0.880)					coding (253/1446 nt)	PP_3834	hypothetical protein
*	?	NC_002947	= 4417552	68 (1.260)	5 (0.100)	3/252	NT	6.6%	coding (445/552 nt)	PP_3905	LuxR family transcriptional regulator
	?	NC_002947	= 4417586	75 (1.430)					coding (479/552 nt)	PP_3905	LuxR family transcriptional regulator
*	?	NC_002947	4430826 =	47 (0.870)	4 (0.080)	4/246	NT	7.7%	coding (596/1068 nt)	PP_3925	hypothetical protein
	?	NC_002947	4430872 =	51 (1.000)					coding (642/1068 nt)	PP_3925	hypothetical protein
*	?	NC_002947	4442451 =	50 (0.920)	4 (0.080)	4/246	NT	6.9%	coding (80/1293 nt)	nicP‑II	porin‑like protein
	?	NC_002947	4442498 =	61 (1.190)					coding (33/1293 nt)	nicP‑II	porin‑like protein
*	?	NC_002947	4445380 =	64 (1.180)	4 (0.080)	3/250	NT	6.1%	coding (220/753 nt)	nicE	maleate isomerase
	?	NC_002947	4445418 =	61 (1.170)					coding (182/753 nt)	nicE	maleate isomerase
*	?	NC_002947	4474178 =	63 (1.160)	4 (0.080)	3/248	NT	6.8%	coding (1358/1536 nt)	PP_3964	transposase
	?	NC_002947	4474231 =	49 (0.950)					coding (1305/1536 nt)	PP_3964	transposase
*	?	NC_002947	4474272 =	56 (1.040)	9 (0.180)	6/244	NT	14.6%	coding (1264/1536 nt)	PP_3964	transposase
	?	NC_002947	= 5038176	NA (NA)					coding (1268/1536 nt)	PP_4443	transposase
*	?	NC_002947	= 4485486	46 (0.850)	4 (0.080)	3/244	NT	8.1%	coding (662/1302 nt)	PP_3977	hypothetical protein
	?	NC_002947	= 4485509	48 (0.950)					coding (685/1302 nt)	PP_3977	hypothetical protein
*	?	NC_002947	= 4504446	44 (0.810)	3 (0.060)	3/244	NT	6.2%	coding (204/360 nt)	PP_3994	TusC‑like tRNA 2‑thiouridine(34) synthase
	?	NC_002947	= 4504475	50 (0.990)					coding (233/360 nt)	PP_3994	TusC‑like tRNA 2‑thiouridine(34) synthase
*	?	NC_002947	4507779 =	55 (1.020)	3 (0.060)	3/244	NT	5.2%	coding (1002/1392 nt)	cysG	multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase
	?	NC_002947	4507834 =	57 (1.120)					coding (947/1392 nt)	cysG	multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase
*	?	NC_002947	4509677 =	57 (1.050)	3 (0.060)	3/246	NT	5.3%	coding (385/1281 nt)	serS	serine‑‑tRNA ligase
	?	NC_002947	4509734 =	54 (1.060)					coding (328/1281 nt)	serS	serine‑‑tRNA ligase
*	?	NC_002947	= 4551973	18 (0.330)	7 (0.170)	6/194	NT	27.8%	intergenic (+67/+114)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
	?	NC_002947	= 4552024	23 (0.570)					intergenic (+118/+63)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
*	?	NC_002947	= 4554799	51 (0.940)	3 (0.060)	3/252	NT	5.7%	coding (127/1797 nt)	PP_4041	glycoside hydrolase
	?	NC_002947	= 4554878	50 (0.950)					coding (48/1797 nt)	PP_4041	glycoside hydrolase
*	?	NC_002947	4581379 =	63 (1.160)	4 (0.080)	4/244	NT	6.5%	coding (2049/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase
	?	NC_002947	4581481 =	56 (1.100)					coding (1947/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase
*	?	NC_002947	4590354 =	62 (1.150)	5 (0.100)	4/252	NT	7.6%	coding (1036/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta
	?	NC_002947	4590412 =	61 (1.160)					coding (1094/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta
*	?	NC_002947	4676734 =	52 (0.960)	4 (0.080)	4/250	NT	7.8%	coding (1840/2250 nt)	ldcC	lysine decarboxylase
	?	NC_002947	4676781 =	44 (0.850)					coding (1793/2250 nt)	ldcC	lysine decarboxylase
*	?	NC_002947	= 4699973	55 (1.020)	4 (0.080)	4/248	NT	6.9%	coding (715/2655 nt)	kdpD	sensor protein
	?	NC_002947	= 4700030	55 (1.070)					coding (658/2655 nt)	kdpD	sensor protein
*	?	NC_002947	4751446 =	61 (1.130)	3 (0.060)	3/246	NT	5.3%	coding (726/1326 nt)	PP_4206	MFS transporter
	?	NC_002947	4751509 =	49 (0.960)					coding (663/1326 nt)	PP_4206	MFS transporter
*	?	NC_002947	4760846 =	71 (1.310)	4 (0.080)	4/248	NT	6.0%	coding (908/1389 nt)	pvdM	dipeptidase
	?	NC_002947	4760894 =	58 (1.120)					coding (956/1389 nt)	pvdM	dipeptidase
*	?	NC_002947	= 4766543	63 (1.160)	4 (0.080)	4/246	NT	6.2%	coding (1196/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	= 4766585	62 (1.210)					coding (1238/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
*	?	NC_002947	4771307 =	44 (0.810)	3 (0.060)	3/248	NT	5.7%	coding (7960/10413 nt)	pvdD	non‑ribosomal peptide synthetase
	?	NC_002947	4771364 =	57 (1.110)					coding (7903/10413 nt)	pvdD	non‑ribosomal peptide synthetase
*	?	NC_002947	4780240 =	77 (1.420)	6 (0.120)	5/246	NT	7.8%	coding (7074/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4780277 =	69 (1.350)					coding (7037/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	4780451 =	71 (1.310)	4 (0.080)	4/250	NT	5.9%	coding (6863/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4780484 =	59 (1.130)					coding (6830/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4803905	62 (1.150)	4 (0.080)	4/246	NT	6.4%	coding (624/1212 nt)	PP_4232	cytochrome c family protein
	?	NC_002947	= 4803924	59 (1.150)					coding (605/1212 nt)	PP_4232	cytochrome c family protein
*	?	NC_002947	4808174 =	0 (0.000)	26 (0.660)	22/190	NT	55.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	41 (1.040)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4818599	53 (0.980)	5 (0.100)	5/242	NT	9.5%	coding (12591/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	= 4818610	46 (0.910)					coding (12580/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4828936	58 (1.070)	4 (0.080)	4/246	NT	7.2%	coding (2254/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	= 4828975	48 (0.940)					coding (2215/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4855936	36 (0.670)	3 (0.060)	3/246	NT	6.0%	coding (715/807 nt)	PP_4270	hypothetical protein
	?	NC_002947	= 4855996	60 (1.170)					coding (775/807 nt)	PP_4270	hypothetical protein
*	?	NC_002947	= 4896376	34 (0.630)	12 (0.230)	7/250	NT	23.8%	intergenic (+9/‑199)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896467	44 (0.850)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4902847	28 (0.520)	4 (0.090)	4/226	NT	12.6%	intergenic (+33/+86)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit
	?	NC_002947	= 4902910	31 (0.660)					intergenic (+96/+23)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit
*	?	NC_002947	= 4908005	29 (0.540)	7 (0.130)	5/256	NT	19.7%	coding (20/198 nt)	PP_4317	hypothetical protein
	?	NC_002947	= 4908082	NA (NA)					intergenic (‑58/‑224)	PP_4317/PP_4318	hypothetical protein/transposase
*	?	NC_002947	= 4978918	51 (0.940)	8 (0.160)	6/244	NT	13.6%	coding (504/786 nt)	flgG	flagellar basal‑body rod protein FlgG
	?	NC_002947	= 4978941	54 (1.060)					coding (481/786 nt)	flgG	flagellar basal‑body rod protein FlgG
*	?	NC_002947	5000620 =	57 (1.050)	3 (0.060)	3/242	NT	6.0%	intergenic (+90/‑1596)	PP_4407/PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
	?	NC_002947	5000661 =	41 (0.820)					intergenic (+131/‑1555)	PP_4407/PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
*	?	NC_002947	5021656 =	35 (0.650)	5 (0.100)	4/240	NT	11.6%	intergenic (‑57/+42)	PP_4425/PP_4426	amino acid ABC transporter ATP‑binding protein/amino acid ABC transporter permease
	?	NC_002947	5021716 =	44 (0.880)					coding (639/657 nt)	PP_4426	amino acid ABC transporter permease
*	?	NC_002947	5034832 =	0 (0.000)	6 (0.120)	3/250	NT	100%	coding (872/1536 nt)	PP_4439	transposase
	?	NC_002947	5037821 =	NA (NA)					coding (913/1536 nt)	PP_4443	transposase
*	?	NC_002947	5036927 =	NA (NA)	6 (0.120)	3/246	NT	NA	coding (19/1536 nt)	PP_4443	transposase
	?	NC_002947	5036999 =	NA (NA)					coding (91/1536 nt)	PP_4443	transposase
*	?	NC_002947	= 5045338	41 (0.760)	4 (0.080)	3/240	NT	9.0%	intergenic (‑140/+41)	PP_5681/PP_4449	hypothetical protein/hypothetical protein
	?	NC_002947	= 5045384	43 (0.860)					coding (250/255 nt)	PP_4449	hypothetical protein
*	?	NC_002947	= 5110185	33 (0.610)	3 (0.060)	3/246	NT	8.7%	coding (521/1419 nt)	aroP‑II	aromatic amino acid transport protein
	?	NC_002947	= 5110206	32 (0.630)					coding (500/1419 nt)	aroP‑II	aromatic amino acid transport protein
*	?	NC_002947	= 5115458	80 (1.480)	4 (0.080)	4/248	NT	5.1%	coding (328/861 nt)	PP_4500	TrpH family protein
	?	NC_002947	= 5115491	74 (1.440)					coding (295/861 nt)	PP_4500	TrpH family protein
*	?	NC_002947	= 5120033	54 (1.000)	4 (0.080)	4/246	NT	6.7%	coding (223/558 nt)	PP_4506	nitroreductase family protein
	?	NC_002947	= 5120053	60 (1.170)					coding (203/558 nt)	PP_4506	nitroreductase family protein
*	?	NC_002947	5148568 =	75 (1.390)	4 (0.080)	4/246	NT	5.5%	intergenic (‑29/+67)	PP_5695/PP_4534	hypothetical protein/hypothetical protein
	?	NC_002947	5148621 =	67 (1.310)					intergenic (‑82/+14)	PP_5695/PP_4534	hypothetical protein/hypothetical protein
*	?	NC_002947	= 5156701	38 (0.700)	4 (0.080)	4/246	NT	10.8%	coding (223/813 nt)	PP_4540	alpha/beta family hydrolase
	?	NC_002947	= 5156768	30 (0.590)					coding (290/813 nt)	PP_4540	alpha/beta family hydrolase
*	?	NC_002947	5161610 =	54 (1.000)	3 (0.060)	3/248	NT	5.4%	coding (378/1245 nt)	PP_4544	hypothetical protein
	?	NC_002947	5161665 =	54 (1.050)					coding (433/1245 nt)	PP_4544	hypothetical protein
*	?	NC_002947	= 5169459	53 (0.980)	5 (0.100)	5/240	NT	9.5%	coding (1077/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	= 5169504	46 (0.920)					coding (1122/1365 nt)	PP_4547	glutamine synthetase
*	?	NC_002947	= 5172497	53 (0.980)	4 (0.080)	4/248	NT	6.9%	coding (463/1698 nt)	fadD‑I	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	= 5172524	57 (1.110)					coding (436/1698 nt)	fadD‑I	long‑chain‑fatty acid‑‑CoA ligase
*	?	NC_002947	5228936 =	58 (1.070)	3 (0.060)	3/250	NT	5.4%	coding (123/2391 nt)	PP_4606	ferric siderophore receptor
	?	NC_002947	5228976 =	49 (0.940)					coding (83/2391 nt)	PP_4606	ferric siderophore receptor
*	?	NC_002947	= 5231166	64 (1.180)	4 (0.080)	4/254	NT	6.1%	coding (1530/1578 nt)	PP_4610	PepSY‑associated TM helix domain‑containing protein
	?	NC_002947	= 5231188	61 (1.150)					coding (1508/1578 nt)	PP_4610	PepSY‑associated TM helix domain‑containing protein
*	?	NC_002947	5231189 =	61 (1.130)	6 (0.120)	6/250	NT	10.0%	coding (1507/1578 nt)	PP_4610	PepSY‑associated TM helix domain‑containing protein
	?	NC_002947	5231216 =	49 (0.940)					coding (1480/1578 nt)	PP_4610	PepSY‑associated TM helix domain‑containing protein
*	?	NC_002947	5237745 =	45 (0.830)	3 (0.060)	3/250	NT	6.7%	coding (205/387 nt)	PP_4614	hypothetical protein
	?	NC_002947	5237780 =	40 (0.770)					coding (240/387 nt)	PP_4614	hypothetical protein
*	?	NC_002947	= 5252370	45 (0.830)	4 (0.080)	4/246	NT	7.0%	coding (147/456 nt)	PP_4628	hypothetical protein
	?	NC_002947	= 5252435	63 (1.230)					coding (82/456 nt)	PP_4628	hypothetical protein
*	?	NC_002947	5259986 =	67 (1.240)	4 (0.080)	4/248	NT	5.9%	coding (528/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
	?	NC_002947	5260017 =	64 (1.240)					coding (559/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
*	?	NC_002947	5262720 =	59 (1.090)	6 (0.120)	5/250	NT	9.5%	coding (893/1488 nt)	PP_4638	methylenetetrahydrofolate reductase
	?	NC_002947	5262767 =	57 (1.100)					coding (940/1488 nt)	PP_4638	methylenetetrahydrofolate reductase
*	?	NC_002947	5269812 =	40 (0.740)	3 (0.060)	3/248	NT	7.1%	coding (527/1371 nt)	radA	DNA repair enzyme
	?	NC_002947	5269874 =	40 (0.780)					coding (465/1371 nt)	radA	DNA repair enzyme
*	?	NC_002947	= 5273547	59 (1.090)	3 (0.060)	3/246	NT	5.1%	coding (694/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
	?	NC_002947	= 5273617	56 (1.090)					coding (764/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
*	?	NC_002947	= 5277486	69 (1.280)	5 (0.090)	5/256	NT	7.5%	coding (447/1221 nt)	PP_4652	membrane protein
	?	NC_002947	= 5277524	56 (1.050)					coding (485/1221 nt)	PP_4652	membrane protein
*	?	NC_002947	5282008 =	64 (1.180)	4 (0.080)	4/252	NT	6.0%	coding (333/720 nt)	pcaH	protocatechuate 3,4‑dioxygenase subunit beta
	?	NC_002947	5282050 =	63 (1.200)					coding (291/720 nt)	pcaH	protocatechuate 3,4‑dioxygenase subunit beta
*	?	NC_002947	5303181 =	61 (1.130)	5 (0.100)	5/242	NT	8.3%	coding (592/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
	?	NC_002947	5303223 =	54 (1.070)					coding (550/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
*	?	NC_002947	= 5331205	41 (0.760)	3 (0.060)	3/238	NT	6.7%	coding (356/1173 nt)	PP_4692	aspartate/tyrosine/aromatic aminotransferase
	?	NC_002947	= 5331229	46 (0.930)					coding (332/1173 nt)	PP_4692	aspartate/tyrosine/aromatic aminotransferase
*	?	NC_002947	5381441 =	36 (0.670)	6 (0.120)	5/240	NT	15.0%	coding (408/549 nt)	PP_4732	hypothetical protein
	?	NC_002947	5381486 =	35 (0.700)					coding (363/549 nt)	PP_4732	hypothetical protein
*	?	NC_002947	5433183 =	55 (1.020)	4 (0.080)	4/254	NT	6.9%	coding (2081/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	NC_002947	5433238 =	55 (1.040)					coding (2026/2529 nt)	hrpB	ATP‑dependent helicase HrpB
*	?	NC_002947	5445939 =	52 (0.960)	5 (0.100)	5/244	NT	8.3%	coding (84/624 nt)	thiE	thiamine‑phosphate synthase
	?	NC_002947	5445996 =	62 (1.220)					coding (141/624 nt)	thiE	thiamine‑phosphate synthase
*	?	NC_002947	= 5447383	52 (0.960)	3 (0.060)	3/242	NT	5.5%	coding (888/1284 nt)	hemL	glutamate‑1‑semialdehyde 2,1‑aminomutase
	?	NC_002947	= 5447413	54 (1.070)					coding (918/1284 nt)	hemL	glutamate‑1‑semialdehyde 2,1‑aminomutase
*	?	NC_002947	= 5456121	54 (1.000)	4 (0.080)	4/244	NT	6.0%	intergenic (‑80/‑148)	PP_4793/leuS	hypothetical protein/leucine‑‑tRNA ligase
	?	NC_002947	= 5456157	74 (1.460)					intergenic (‑116/‑112)	PP_4793/leuS	hypothetical protein/leucine‑‑tRNA ligase
*	?	NC_002947	5458249 =	45 (0.830)	4 (0.080)	4/254	NT	7.1%	coding (1981/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	5458336 =	61 (1.150)					coding (2068/2607 nt)	leuS	leucine‑‑tRNA ligase
*	?	NC_002947	5474944 =	51 (0.940)	5 (0.100)	4/242	NT	11.2%	intergenic (‑150/‑156)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
	?	NC_002947	5475014 =	32 (0.640)					intergenic (‑220/‑86)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
*	?	NC_002947	5476362 =	61 (1.130)	3 (0.060)	3/246	NT	5.4%	coding (592/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
	?	NC_002947	5476400 =	48 (0.940)					coding (630/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
*	?	NC_002947	= 5477130	33 (0.610)	11 (0.300)	8/178	NT	28.8%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477147	32 (0.870)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
*	?	NC_002947	5481748 =	69 (1.280)	5 (0.100)	5/252	NT	7.0%	coding (1237/1356 nt)	PP_4819	hypothetical protein
	?	NC_002947	5481789 =	67 (1.280)					coding (1278/1356 nt)	PP_4819	hypothetical protein
*	?	NC_002947	5496970 =	50 (0.920)	3 (0.060)	3/244	NT	6.3%	coding (43/1212 nt)	cobL	precorrin‑6Y C(5,15)‑methyltransferase
	?	NC_002947	5497075 =	43 (0.850)					coding (148/1212 nt)	cobL	precorrin‑6Y C(5,15)‑methyltransferase
*	?	NC_002947	= 5526980	49 (0.910)	3 (0.060)	3/246	NT	5.5%	coding (493/1134 nt)	PP_4860	mannose‑6‑phosphate isomerase
	?	NC_002947	= 5527008	56 (1.090)					coding (521/1134 nt)	PP_4860	mannose‑6‑phosphate isomerase
*	?	NC_002947	= 5538192	54 (1.000)	4 (0.080)	3/248	NT	7.0%	coding (270/588 nt)	PP_4871	lysine decarboxylase family protein
	?	NC_002947	= 5538223	54 (1.050)					coding (301/588 nt)	PP_4871	lysine decarboxylase family protein
*	?	NC_002947	5543748 =	73 (1.350)	6 (0.120)	6/244	NT	9.6%	coding (395/864 nt)	PP_4875	membrane protein
	?	NC_002947	5543800 =	45 (0.890)					coding (343/864 nt)	PP_4875	membrane protein
*	?	NC_002947	5545321 =	NA (NA)	73 (1.370)	64/256	NT	100%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	0 (0.000)					coding (19/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5545666	NA (NA)	72 (1.360)	54/254	NT	100%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5621244 =	0 (0.000)					coding (20/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	5547926 =	67 (1.240)	4 (0.080)	4/246	NT	5.7%	coding (1128/2574 nt)	rnr	exoribonuclease R
	?	NC_002947	5547986 =	69 (1.350)					coding (1068/2574 nt)	rnr	exoribonuclease R
*	?	NC_002947	5556288 =	56 (1.040)	3 (0.060)	3/246	NT	5.8%	coding (1342/1935 nt)	PP_4888	methyl‑accepting chemotaxis transducer
	?	NC_002947	5556335 =	44 (0.860)					coding (1295/1935 nt)	PP_4888	methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 5581109	51 (0.940)	4 (0.080)	4/248	NT	7.3%	coding (144/1458 nt)	PP_4910	hypothetical protein
	?	NC_002947	= 5581144	53 (1.030)					coding (179/1458 nt)	PP_4910	hypothetical protein
*	?	NC_002947	= 5587669	63 (1.160)	3 (0.060)	3/248	NT	5.0%	coding (1479/1905 nt)	parE	DNA topoisomerase IV subunit B
	?	NC_002947	= 5587724	53 (1.030)					coding (1424/1905 nt)	parE	DNA topoisomerase IV subunit B
*	?	NC_002947	5619213 =	58 (1.070)	3 (0.060)	3/244	NT	5.1%	coding (462/606 nt)	PP_4937	toluene tolerance protein
	?	NC_002947	5619250 =	57 (1.120)					coding (499/606 nt)	PP_4937	toluene tolerance protein
*	?	NC_002947	= 5661040	48 (0.890)	3 (0.060)	3/240	NT	6.6%	coding (665/1701 nt)	ligB	DNA ligase B
	?	NC_002947	= 5661069	41 (0.820)					coding (694/1701 nt)	ligB	DNA ligase B
*	?	NC_002947	= 5666565	51 (0.940)	3 (0.060)	3/248	NT	5.2%	coding (579/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	= 5666609	60 (1.160)					coding (623/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter
*	?	NC_002947	= 5669426	50 (0.920)	4 (0.080)	4/232	NT	7.8%	intergenic (+27/‑98)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
	?	NC_002947	= 5669447	50 (1.040)					intergenic (+48/‑77)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
*	?	NC_002947	= 5685459	79 (1.460)	4 (0.080)	4/244	NT	5.3%	coding (1434/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	= 5685481	70 (1.380)					coding (1412/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
*	?	NC_002947	= 5716610	52 (0.960)	4 (0.080)	4/250	NT	7.0%	coding (118/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	= 5716637	57 (1.100)					coding (145/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
*	?	NC_002947	5724935 =	55 (1.020)	3 (0.060)	3/246	NT	5.1%	coding (2031/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H
	?	NC_002947	5725015 =	59 (1.150)					coding (1951/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H
*	?	NC_002947	= 5759435	29 (0.540)	5 (0.120)	5/196	NT	13.4%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759463	43 (1.060)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5784052	54 (1.000)	4 (0.080)	4/246	NT	7.4%	coding (2527/3309 nt)	kefA	intermediate mechanosensitive channel protein
	?	NC_002947	= 5784107	49 (0.960)					coding (2582/3309 nt)	kefA	intermediate mechanosensitive channel protein
*	?	NC_002947	5786920 =	75 (1.390)	4 (0.080)	4/252	NT	5.6%	coding (333/435 nt)	trxC	thioredoxin
	?	NC_002947	5786973 =	62 (1.180)					coding (386/435 nt)	trxC	thioredoxin
*	?	NC_002947	5799887 =	76 (1.410)	6 (0.120)	5/246	NT	8.2%	coding (1089/1098 nt)	aroB	3‑dehydroquinate synthase
	?	NC_002947	5799924 =	63 (1.230)					coding (1052/1098 nt)	aroB	3‑dehydroquinate synthase
*	?	NC_002947	= 5816871	27 (0.500)	6 (0.130)	5/224	NT	19.9%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816898	25 (0.540)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5825124 =	54 (1.000)	3 (0.060)	3/250	NT	5.1%	coding (349/723 nt)	trmB	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
	?	NC_002947	5825210 =	60 (1.150)					coding (263/723 nt)	trmB	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
*	?	NC_002947	5852239 =	70 (1.290)	4 (0.080)	4/250	NT	5.9%	coding (55/1089 nt)	PP_5129	hypothetical protein
	?	NC_002947	5852274 =	60 (1.150)					coding (20/1089 nt)	PP_5129	hypothetical protein
*	?	NC_002947	5871822 =	64 (1.180)	3 (0.060)	3/242	NT	5.3%	coding (831/2280 nt)	ptsP	phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5871876 =	48 (0.950)					coding (777/2280 nt)	ptsP	phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	5873510 =	45 (0.830)	4 (0.080)	4/246	NT	8.3%	coding (215/657 nt)	PP_5147	haloacid dehalogenase‑like family hydrolase
	?	NC_002947	5873556 =	46 (0.900)					coding (261/657 nt)	PP_5147	haloacid dehalogenase‑like family hydrolase
*	?	NC_002947	5876984 =	56 (1.040)	3 (0.070)	3/212	NT	7.5%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	28 (0.640)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	= 5883043	67 (1.240)	5 (0.100)	5/242	NT	7.7%	coding (151/477 nt)	PP_5156	hypothetical protein
	?	NC_002947	= 5883077	58 (1.150)					coding (117/477 nt)	PP_5156	hypothetical protein
*	?	NC_002947	= 5908269	55 (1.020)	8 (0.160)	5/246	NT	14.2%	coding (952/1098 nt)	spuD	spermidine/putrescine ABC transporter substrate‑binding protein
	?	NC_002947	= 5908285	45 (0.880)					coding (936/1098 nt)	spuD	spermidine/putrescine ABC transporter substrate‑binding protein
*	?	NC_002947	= 5913060	62 (1.150)	6 (0.110)	5/252	NT	8.8%	coding (329/1377 nt)	spuI	glutamylpolyamine synthetase
	?	NC_002947	= 5913113	65 (1.240)					coding (382/1377 nt)	spuI	glutamylpolyamine synthetase
*	?	NC_002947	5926359 =	50 (0.920)	4 (0.080)	4/244	NT	8.4%	coding (1536/1623 nt)	PP_5195	iron ABC transporter permease
	?	NC_002947	5926390 =	40 (0.790)					coding (1505/1623 nt)	PP_5195	iron ABC transporter permease
*	?	NC_002947	5931556 =	57 (1.050)	3 (0.060)	3/244	NT	5.4%	coding (514/1200 nt)	ubiH	2‑octaprenyl‑6‑methoxyphenyl hydroxylase
	?	NC_002947	5931654 =	52 (1.030)					coding (416/1200 nt)	ubiH	2‑octaprenyl‑6‑methoxyphenyl hydroxylase
*	?	NC_002947	5976547 =	63 (1.160)	3 (0.060)	3/244	NT	5.0%	coding (348/1491 nt)	yifB	ATP‑dependent chelatase
	?	NC_002947	5976606 =	54 (1.060)					coding (407/1491 nt)	yifB	ATP‑dependent chelatase
*	?	NC_002947	= 5978785	69 (1.280)	5 (0.090)	4/254	NT	6.4%	coding (332/993 nt)	PP_5241	LuxR family transcriptional regulator
	?	NC_002947	= 5978841	78 (1.480)					coding (276/993 nt)	PP_5241	LuxR family transcriptional regulator
*	?	NC_002947	= 5989280	56 (1.040)	3 (0.060)	3/232	NT	5.9%	noncoding (29/87 nt)	PP_mr64	C4 ncRNA
	?	NC_002947	= 5989327	45 (0.930)					noncoding (76/87 nt) coding (38/399 nt)	PP_mr64 PP_5247	C4 ncRNA hypothetical protein
*	?	NC_002947	6009263 =	67 (1.240)	9 (0.180)	7/246	NT	12.6%	coding (1590/1668 nt)	PP_5263	GGDEF domain‑containing protein
	?	NC_002947	6009287 =	62 (1.210)					coding (1566/1668 nt)	PP_5263	GGDEF domain‑containing protein
*	?	NC_002947	6014689 =	78 (1.440)	6 (0.120)	5/248	NT	7.5%	coding (1076/1860 nt)	PP_5266	acetyl‑CoA hydrolase family protein
	?	NC_002947	6014720 =	74 (1.440)					coding (1045/1860 nt)	PP_5266	acetyl‑CoA hydrolase family protein
*	?	NC_002947	6019248 =	53 (0.980)	5 (0.110)	4/214	NT	12.3%	intergenic (‑49/+96)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	6019324 =	28 (0.630)					intergenic (‑125/+20)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6020434	40 (0.740)	3 (0.060)	3/250	NT	7.4%	coding (215/1305 nt)	dadA‑II	D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6020469	37 (0.710)					coding (180/1305 nt)	dadA‑II	D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6024519	51 (0.940)	3 (0.060)	3/250	NT	5.4%	coding (942/1491 nt)	yjiR	transcriptional regulator
	?	NC_002947	= 6024547	56 (1.080)					coding (970/1491 nt)	yjiR	transcriptional regulator
*	?	NC_002947	6032481 =	58 (1.070)	6 (0.120)	6/246	NT	10.4%	coding (1335/1590 nt)	dppA‑IV	dipeptide transport protein
	?	NC_002947	6032531 =	48 (0.940)					coding (1385/1590 nt)	dppA‑IV	dipeptide transport protein
*	?	NC_002947	6077821 =	42 (0.780)	5 (0.110)	5/212	NT	14.2%	intergenic (‑123/+115)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
	?	NC_002947	6077921 =	26 (0.590)					intergenic (‑223/+15)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
*	?	NC_002947	6090811 =	68 (1.260)	4 (0.080)	4/252	NT	6.1%	coding (676/1530 nt)	PP_5342	GntR family transcriptional regulator
	?	NC_002947	6090841 =	57 (1.090)					coding (646/1530 nt)	PP_5342	GntR family transcriptional regulator
*	?	NC_002947	6110503 =	72 (1.330)	4 (0.080)	4/248	NT	5.5%	coding (1007/1209 nt)	PP_5361	protein P47K
	?	NC_002947	6110547 =	70 (1.360)					coding (963/1209 nt)	PP_5361	protein P47K
*	?	NC_002947	6113440 =	60 (1.110)	4 (0.080)	4/248	NT	6.5%	coding (570/1446 nt)	clsA	cardiolipin synthase
	?	NC_002947	6113474 =	58 (1.120)					coding (604/1446 nt)	clsA	cardiolipin synthase
*	?	NC_002947	= 6152840	48 (0.890)	3 (0.060)	3/244	NT	6.2%	coding (421/489 nt)	PP_5738	hypothetical protein
	?	NC_002947	= 6152866	45 (0.890)					coding (447/489 nt)	PP_5738	hypothetical protein
*	?	NC_002947	6178538 =	74 (1.370)	5 (0.100)	5/252	NT	6.9%	coding (540/1545 nt)	atpA	ATP synthase subunit alpha
	?	NC_002947	6178598 =	64 (1.220)					coding (480/1545 nt)	atpA	ATP synthase subunit alpha