Tue Feb 18 15:27:07 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o breseq_processes/50 -r /var/data/Pseudomonas_putida_KT2440.gb /var/alemutpipe-outputs/good/ALE-47_S47_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-47_S47_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-47_S47_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-47_S47_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-47_S47_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-47_S47_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-47_S47_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-47_S47_L004_R2_001.good.fq.gz