breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	6,332	C→A	7.1%	R17R (CGG→CGT)	trmE ←	GTPase
RA	6,339	T→A	7.7%	Q15L (CAG→CTG)	trmE ←	GTPase
RA	6,346	T→G	7.1%	T13P (ACG→CCG)	trmE ←	GTPase
RA	6,351	A→G	7.0%	I11T (ATC→ACC)	trmE ←	GTPase
RA	6,429	Δ1 bp	5.2%	intergenic (‑47/+42)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	23,203	A→G	5.6%	R10G (AGG→GGG)	PP_0018 →	hypothetical protein
RA	41,101	G→A	6.5%	P211P (CCG→CCA)	oprP →	porin P
RA	58,435	G→C	7.3%	intergenic (‑346/+342)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,439	G→C	8.1%	intergenic (‑350/+338)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	68,591	T→C	6.7%	I228V (ATT→GTT)	PP_0058 ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	70,384	G→A	6.0%	G507G (GGC→GGT)	glyS ←	glycine‑tRNA ligase subunit beta
RA	97,592	G→T	15.0%	intergenic (+21/+15)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,593	A→T	16.5%	intergenic (+22/+14)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,594	A→C	20.5%	intergenic (+23/+13)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	100,112	C→A	11.9%	G99G (GGG→GGT) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,113	C→A	11.8%	G99V (GGG→GTG) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,116	T→G	11.4%	N98T (AAC→ACC) ‡	PP_0094 ←	5'‑nucleotidase
RA	100,117	T→G	11.4%	N98H (AAC→CAC) ‡	PP_0094 ←	5'‑nucleotidase
RA	107,336	G→C	10.4%	L401L (CTG→CTC)	PP_0101 →	sulfate transporter
RA	122,168	C→T	8.7%	A705V (GCG→GTG)	katE →	hydroperoxidase
RA	122,224	G→T	7.3%	intergenic (+34/+27)	katE → / ← PP_0116	hydroperoxidase/putative lipoprotein
RA	133,969	G→C	6.3%	L249L (CTG→CTC)	PP_0128 →	hypothetical protein
RA	133,970	G→C	5.3%	E250Q (GAG→CAG)	PP_0128 →	hypothetical protein
RA	155,543	G→T	10.7%	intergenic (‑248/+35)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	155,546	A→C	10.0%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	162,281	A→T	7.7%	intergenic (‑315/+59)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,282	A→T	9.6%	intergenic (‑316/+58)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	182,034	G→A	11.2%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	10.9%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	10.9%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	195,559	C→A	31.7%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	13.2%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	12.4%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	59.3%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	7.2%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	13.2%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	14.4%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	17.2%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	19.6%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	6.2%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	11.1%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	5.0%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	11.2%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	6.5%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	5.7%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	6.7%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	13.7%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	14.0%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	13.2%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	9.1%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	211,621	G→C	6.8%	V5709V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	212,034	T→A	8.1%	L5847Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	221,954	G→A	6.2%	L242L (CTG→CTA)	PP_0169 →	TauD/TfdA family dioxygenase
RA	226,907	C→G	7.4%	A61G (GCC→GGC)	PP_0175 →	transcriptional regulator
RA	237,450	G→A	8.9%	D111N (GAT→AAT) ‡	algR →	alginate biosynthesis regulatory protein
RA	237,452	T→G	8.6%	D111E (GAT→GAG) ‡	algR →	alginate biosynthesis regulatory protein
RA	237,455	C→A	8.8%	A112A (GCC→GCA)	algR →	alginate biosynthesis regulatory protein
RA	237,457	T→C	9.1%	L113S (TTG→TCG)	algR →	alginate biosynthesis regulatory protein
RA	239,006	C→T	7.7%	S29S (AGC→AGT)	hemD →	uroporphyrinogen‑III synthase
RA	243,508	T→A	8.8%	*221C (TGA→TGT) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,510	A→T	9.2%	*221R (TGA→AGA) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,512	T→A	9.2%	D220V (GAC→GTC)	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	262,746	Δ1 bp	8.2%	coding (263/282 nt)	PP_0211 →	hypothetical protein
RA	262,752	T→A	8.2%	L90Q (CTG→CAG)	PP_0211 →	hypothetical protein
RA	272,007	A→T	8.0%	intergenic (+12/+17)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	272,008	A→T	8.0%	intergenic (+13/+16)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	272,009	A→T	8.1%	intergenic (+14/+15)	PP_0218 → / ← metP	sensory box protein/L,D‑methionine D‑methionine ABC transporter permease
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	288,011	T→C	7.1%	T33A (ACC→GCC)	tauA ←	taurine ABC transporter substrate‑binding protein
RA	288,016	T→C	5.5%	Y31C (TAC→TGC)	tauA ←	taurine ABC transporter substrate‑binding protein
RA	296,502	A→T	5.9%	L501Q (CTG→CAG)	gshA ←	glutamate‑‑cysteine ligase
RA	305,153	T→G	8.6%	intergenic (+11/+18)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	305,154	G→C	8.8%	intergenic (+12/+17)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	305,155	C→A	8.8%	intergenic (+13/+16)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	312,858	G→T	5.1%	G118G (GGC→GGA) ‡	fdhD ←	protein sulfur transferase
RA	312,859	C→G	5.1%	G118A (GGC→GCC) ‡	fdhD ←	protein sulfur transferase
RA	322,133	G→A	7.4%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	7.3%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,065	C→A	11.3%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,068	T→G	11.7%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	332,751	A→G	7.7%	intergenic (‑65/‑111)	PP_0273 ← / → PP_5435	hypothetical protein/hypothetical protein
RA	334,603	A→T	8.5%	L28* (TTG→TAG) ‡	PP_0276 ←	Cro/CI family transcriptional regulator
RA	334,604	A→T	8.5%	L28M (TTG→ATG) ‡	PP_0276 ←	Cro/CI family transcriptional regulator
RA	334,939	C→T	7.8%	intergenic (‑254/+34)	PP_0276 ← / ← PP_t73	Cro/CI family transcriptional regulator/tRNA‑Thr
RA	334,944	T→G	7.6%	intergenic (‑259/+29)	PP_0276 ← / ← PP_t73	Cro/CI family transcriptional regulator/tRNA‑Thr
RA	334,945	T→A	7.5%	intergenic (‑260/+28)	PP_0276 ← / ← PP_t73	Cro/CI family transcriptional regulator/tRNA‑Thr
RA	334,946	T→A	7.5%	intergenic (‑261/+27)	PP_0276 ← / ← PP_t73	Cro/CI family transcriptional regulator/tRNA‑Thr
RA	334,952	A→G	7.5%	intergenic (‑267/+21)	PP_0276 ← / ← PP_t73	Cro/CI family transcriptional regulator/tRNA‑Thr
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,809	A→G	40.0%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	45.5%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	45.5%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	43.3%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	38.4%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	40.0%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	37.0%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	342,201	G→A	6.1%	V240I (GTA→ATA)	gabP‑I →	gamma‑aminobutyrate permease
RA	343,607	T→A	6.6%	intergenic (‑163/‑77)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,609	T→A	6.6%	intergenic (‑165/‑75)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	344,032	A→G	12.3%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	13.7%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	13.7%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,662	T→A	8.8%	E314V (GAG→GTG)	mutY ←	A/G‑specific adenine glycosylase
RA	344,665	C→T	8.9%	G313D (GGC→GAC)	mutY ←	A/G‑specific adenine glycosylase
RA	344,671	G→C	10.3%	P311R (CCG→CGG)	mutY ←	A/G‑specific adenine glycosylase
RA	344,677	A→G	10.3%	V309A (GTC→GCC)	mutY ←	A/G‑specific adenine glycosylase
RA	344,680	T→A	10.4%	H308L (CAC→CTC)	mutY ←	A/G‑specific adenine glycosylase
RA	349,843	A→T	5.5%	intergenic (+68/‑112)	PP_0288 → / → hisB	oxalate/formate antiporter/imidazoleglycerol‑phosphate dehydratase
RA	349,844	A→T	5.5%	intergenic (+69/‑111)	PP_0288 → / → hisB	oxalate/formate antiporter/imidazoleglycerol‑phosphate dehydratase
RA	349,845	A→T	5.6%	intergenic (+70/‑110)	PP_0288 → / → hisB	oxalate/formate antiporter/imidazoleglycerol‑phosphate dehydratase
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	392,293	T→C	8.7%	V856A (GTA→GCA)	soxA →	sarcosine oxidase subunit alpha
RA	392,295	C→G	8.5%	L857V (CTG→GTG) ‡	soxA →	sarcosine oxidase subunit alpha
RA	392,297	G→A	8.8%	L857L (CTG→CTA) ‡	soxA →	sarcosine oxidase subunit alpha
RA	395,846	C→A	6.5%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,847	A→T	6.5%	intergenic (+29/+175)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,848	T→G	6.5%	intergenic (+30/+174)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	406,026	C→G	7.3%	V11L (GTG→CTG)	PP_0337 ←	sensory box protein
RA	406,027	A→C	8.7%	R10R (CGT→CGG)	PP_0337 ←	sensory box protein
RA	406,030	G→T	7.4%	S9R (AGC→AGA) ‡	PP_0337 ←	sensory box protein
RA	406,031	C→G	7.6%	S9T (AGC→ACC) ‡	PP_0337 ←	sensory box protein
RA	416,121	G→C	7.7%	D297H (GAC→CAC)	waaC →	ADP‑heptose‑‑LPS heptosyltransferase
RA	417,372	C→T	7.9%	P361L (CCG→CTG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,375	A→G	8.2%	Q362R (CAG→CGG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,614	C→G	8.9%	A68G (GCC→GGC)	waaP →	lipopolysaccharide core heptose (I) kinase
RA	418,295	C→G	8.5%	L26L (CTC→CTG)	PP_0345 →	heptose kinase WapP
RA	418,296	C→G	8.9%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	425,348	A→C	8.7%	intergenic (‑39/+18)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,350	G→T	7.6%	intergenic (‑41/+16)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,359	A→G	8.5%	intergenic (‑50/+7)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	427,133	A→G	6.6%	Y222Y (TAT→TAC)	PP_0350 ←	ferrichrome‑iron receptor
RA	427,752	A→C	8.6%	L16R (CTG→CGG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	427,753	G→T	8.6%	L16M (CTG→ATG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	459,904	A→C	5.1%	intergenic (‑50/+29)	pqqB ← / ← pqqA	coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA	464,149	G→A	10.6%	D316D (GAC→GAT)	davB ←	lysine 2‑monooxygenase
RA	470,955	A→T	5.7%	M1K (ATG→AAG) †	PP_0386 ←	sensory box protein
RA	471,066	T→C	8.2%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,067	G→A	8.1%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	479,493	A→G	11.1%	intergenic (‑25/+31)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,496	A→T	10.7%	intergenic (‑28/+28)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,499	A→T	10.8%	intergenic (‑31/+25)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,502	C→T	11.3%	intergenic (‑34/+22)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	502,690	T→A	6.9%	F327I (TTC→ATC)	PP_0413 →	polyamine ABC transporter permease
RA	503,592	T→C	7.8%	F208S (TTT→TCT) ‡	PP_0414 →	polyamine ABC transporter permease
RA	503,593	T→A	7.8%	F208L (TTT→TTA) ‡	PP_0414 →	polyamine ABC transporter permease
RA	503,594	G→A	7.9%	D209N (GAC→AAC)	PP_0414 →	polyamine ABC transporter permease
RA	503,831	A→T	8.1%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	6.5%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	6.5%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	505,155	T→C	5.8%	F179F (TTT→TTC)	PP_0416 →	phosphoglycolate phosphatase
RA	508,220	T→A	6.9%	N264I (AAC→ATC) ‡	estP ←	esterase EstP
RA	508,221	T→C	6.9%	N264D (AAC→GAC) ‡	estP ←	esterase EstP
RA	518,782	G→A	7.1%	A57A (GCG→GCA)	argC →	N‑acetyl‑gamma‑glutamyl‑phosphate reductase
RA	537,458	T→A	9.0%	noncoding (54/66 nt)	PP_mr07 →	P26 ncRNA
RA	537,461	T→A	9.1%	noncoding (57/66 nt)	PP_mr07 →	P26 ncRNA
RA	537,468	G→A	7.2%	noncoding (64/66 nt)	PP_mr07 →	P26 ncRNA
RA	555,765	T→G	10.0%	S28A (TCG→GCG)	rplN →	50S ribosomal protein L14
RA	555,768	C→A	9.8%	H29N (CAC→AAC)	rplN →	50S ribosomal protein L14
RA	556,978	C→T	8.1%	R9R (CGC→CGT)	rpsN →	30S ribosomal protein S14
RA	556,986	A→C	10.2%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,989	G→T	9.8%	R13L (CGT→CTT)	rpsN →	30S ribosomal protein S14
RA	590,711	T→A	6.5%	W279R (TGG→AGG)	PP_0500 →	dTDP‑4‑rhamnose reductase‑like protein
RA	593,433	G→T	6.8%	E391* (GAG→TAG) ‡	PP_0503 →	MFS transporter
RA	593,434	A→C	6.7%	E391A (GAG→GCG) ‡	PP_0503 →	MFS transporter
RA	613,177	C→T	8.1%	W335* (TGG→TGA)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	613,444	T→C	7.8%	P246P (CCA→CCG)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	625,062	C→T	8.5%	intergenic (‑156/+27)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,063	A→T	8.5%	intergenic (‑157/+26)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,064	A→T	8.1%	intergenic (‑158/+25)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,065	A→G	7.5%	intergenic (‑159/+24)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	650,845	T→A	6.1%	intergenic (‑134/+46)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,846	T→A	6.1%	intergenic (‑135/+45)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,848	A→T	5.8%	intergenic (‑137/+43)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	665,420	G→C	6.6%	A762A (GCG→GCC)	yfhM →	lipoprotein
RA	665,421	G→C	6.6%	G763R (GGC→CGC)	yfhM →	lipoprotein
RA	666,102	A→C	6.8%	M990L (ATG→CTG) ‡	yfhM →	lipoprotein
RA	666,104	G→T	6.7%	M990I (ATG→ATT) ‡	yfhM →	lipoprotein
RA	683,651	A→G	6.3%	L67P (CTG→CCG)	PP_0585 ←	MerR family metal‑sensitive transcriptional regulator
RA	683,656	C→G	6.2%	K65N (AAG→AAC)	PP_0585 ←	MerR family metal‑sensitive transcriptional regulator
RA	690,904	Δ1 bp	6.0%	coding (505/687 nt)	PP_0592 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	697,214	T→C	10.0%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,225	C→G	17.8%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	18.4%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,239	G→A	11.1%	intergenic (+166/‑585)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,722	A→G	51.8%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	713,097	T→A	7.5%	I29N (ATC→AAC)	lspA →	lipoprotein signal peptidase
RA	735,770	C→A	7.4%	A189A (GCG→GCT)	PP_0628 ←	hypothetical protein
RA	743,420	C→T	8.2%	intergenic (+99/+175)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,430	G→A	11.5%	intergenic (+109/+165)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,432	A→C	9.6%	intergenic (+111/+163)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,439	T→G	8.3%	intergenic (+118/+156)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,440	T→A	8.9%	intergenic (+119/+155)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,441	C→A	7.7%	intergenic (+120/+154)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,448	G→T	8.7%	intergenic (+127/+147)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,450	T→C	7.7%	intergenic (+129/+145)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	754,762	T→G	8.3%	intergenic (‑18/+150)	PP_0643 ← / ← PP_0645	hypothetical protein/hypothetical protein
RA	754,763	C→A	8.3%	intergenic (‑19/+149)	PP_0643 ← / ← PP_0645	hypothetical protein/hypothetical protein
RA	770,542	G→A	11.3%	V76I (GTC→ATC) ‡	PP_0662 →	threonine synthase
RA	770,543	T→C	11.2%	V76A (GTC→GCC) ‡	PP_0662 →	threonine synthase
RA	774,358	T→C	6.9%	I322T (ATC→ACC)	PP_0665 →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	779,917	G→T	7.8%	A185D (GCC→GAC) ‡	PP_0670 ←	bile acid/Na+ symporter family transporter
RA	779,918	C→G	8.3%	A185P (GCC→CCC) ‡	PP_0670 ←	bile acid/Na+ symporter family transporter
RA	779,919	A→C	8.4%	G184G (GGT→GGG)	PP_0670 ←	bile acid/Na+ symporter family transporter
RA	788,581	C→A	5.7%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	T→G	5.7%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	801,869	G→A	7.8%	A118A (GCG→GCA)	obg →	GTPase Obg
RA	802,770	T→C	14.3%	intergenic (+28/‑58)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,771	C→A	14.4%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,772	T→G	14.3%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,773	G→A	13.9%	intergenic (+31/‑55)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	807,888	A→T	6.1%	L49Q (CTG→CAG)	PP_0694 ←	hypothetical protein
RA	807,893	C→T	6.4%	K47K (AAG→AAA)	PP_0694 ←	hypothetical protein
RA	807,900	A→T	6.5%	L45Q (CTG→CAG)	PP_0694 ←	hypothetical protein
RA	807,902:1	+T	6.5%	coding (132/708 nt)	PP_0694 ←	hypothetical protein
RA	845,808	A→C	6.4%	R67R (CGT→CGG)	PP_0728 ←	hypothetical protein
RA	845,811	G→T	5.4%	A66A (GCC→GCA)	PP_0728 ←	hypothetical protein
RA	873,418	G→A	6.9%	G18S (GGC→AGC)	PP_5457 →	hypothetical protein
RA	908,829	A→G	8.0%	L127P (CTG→CCG)	cra ←	catabolite DNA‑binding transcriptional regulator
RA	909,319	G→A	7.0%	intergenic (‑111/‑174)	cra ← / → fruB	catabolite DNA‑binding transcriptional regulator/PTS fructose transporter subunit EI/HPr/IIA
RA	932,600	G→A	10.0%	S4341L (TCG→TTG)	PP_0806 ←	surface adhesion protein
RA	932,603	A→G	9.1%	V4340A (GTG→GCG) ‡	PP_0806 ←	surface adhesion protein
RA	932,604	C→T	8.7%	V4340M (GTG→ATG) ‡	PP_0806 ←	surface adhesion protein
RA	932,607	T→C	8.6%	N4339D (AAC→GAC)	PP_0806 ←	surface adhesion protein
RA	955,024	T→C	7.0%	V289A (GTG→GCG)	cyoE →	protoheme IX farnesyltransferase
RA	955,149	A→G	44.5%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	42.8%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	42.9%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	42.9%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	42.8%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	970,692	T→G	8.9%	F181V (TTC→GTC)	tgt →	queuine tRNA‑ribosyltransferase
RA	980,749	T→G	6.2%	L64R (CTG→CGG)	hscB →	DnaJ‑like molecular chaperone
RA	980,755	G→C	6.0%	S66T (AGT→ACT)	hscB →	DnaJ‑like molecular chaperone
RA	980,761	C→A	5.4%	P68Q (CCG→CAG)	hscB →	DnaJ‑like molecular chaperone
RA	980,813	G→A	6.1%	E85E (GAG→GAA)	hscB →	DnaJ‑like molecular chaperone
RA	980,818	C→G	5.9%	T87R (ACG→AGG)	hscB →	DnaJ‑like molecular chaperone
RA	980,823	C→G	5.9%	H89D (CAC→GAC)	hscB →	DnaJ‑like molecular chaperone
RA	980,835	T→C	5.1%	F93L (TTC→CTC)	hscB →	DnaJ‑like molecular chaperone
RA	1,006,478	C→T	11.3%	P470S (CCG→TCG)	PP_0867 →	FecA‑like outer membrane receptor
RA	1,008,233	G→C	7.5%	P172R (CCG→CGG)	yehX ←	ABC transporter ATP‑binding protein
RA	1,013,228	A→T	15.4%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	16.0%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	16.0%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	26.9%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	26.9%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	28.0%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	31.8%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	33.3%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,024,469	G→A	7.3%	S226S (AGC→AGT)	opdP ←	glycine‑glutamate dipeptide porin
RA	1,030,799	A→T	7.4%	E286V (GAG→GTG) ‡	PP_0887 →	sensor histidine kinase
RA	1,030,800	G→C	6.2%	E286D (GAG→GAC) ‡	PP_0887 →	sensor histidine kinase
RA	1,030,801	A→T	6.2%	T287S (ACT→TCT)	PP_0887 →	sensor histidine kinase
RA	1,065,725	T→A	6.8%	E40D (GAA→GAT)	PP_0923 ←	acyltransferase
RA	1,065,730	T→A	6.6%	I39F (ATC→TTC)	PP_0923 ←	acyltransferase
RA	1,074,707	A→T	11.5%	L50Q (CTG→CAG)	gatA ←	glutamyl‑tRNA(Gln) amidotransferase subunit A
RA	1,079,884	T→C	6.2%	L360P (CTG→CCG)	rng →	endoribonuclease G
RA	1,086,692	G→C	8.4%	D119E (GAC→GAG) ‡	PP_0941 ←	ribosome associated protein
RA	1,086,693	T→G	8.5%	D119A (GAC→GCC) ‡	PP_0941 ←	ribosome associated protein
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,132,859	A→G	5.9%	intergenic (‑243/‑29)	PP_0993 ← / → PP_0994	hypothetical protein/RNA polymerase sigma factor
RA	1,132,873	G→A	6.9%	intergenic (‑257/‑15)	PP_0993 ← / → PP_0994	hypothetical protein/RNA polymerase sigma factor
RA	1,145,433	C→T	10.9%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,440	G→A	8.0%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,441	T→C	8.4%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,448	A→G	10.0%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,148,793	G→T	8.0%	T151K (ACG→AAG)	PP_1007 ←	transmembrane sensor
RA	1,148,796	A→C	6.9%	L150R (CTT→CGT)	PP_1007 ←	transmembrane sensor
RA	1,175,005	G→C	7.1%	W27S (TGG→TCG)	PP_1030 →	hypothetical protein
RA	1,219,104	C→T	8.7%	T214M (ACG→ATG)	PP_1064 →	alpha/beta family hydrolase
RA	1,225,480	A→C	9.5%	intergenic (‑56/+90)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,481	A→T	9.4%	intergenic (‑57/+89)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,482	G→T	9.5%	intergenic (‑58/+88)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,226,707	T→A	6.6%	intergenic (‑217/‑114)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,226,710	T→A	6.4%	intergenic (‑220/‑111)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,232,736	G→C	7.0%	intergenic (‑24/+193)	glpD ← / ← glpR	aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR
RA	1,232,737	A→G	6.9%	intergenic (‑25/+192)	glpD ← / ← glpR	aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR
RA	1,238,189	G→A	6.8%	V279V (GTC→GTT)	argF ←	ornithine carbamoyltransferase
RA	1,242,983	G→A	6.6%	intergenic (‑99/‑126)	PP_1083 ← / → tsaA	(2Fe‑2S)‑binding protein/peroxiredoxin
RA	1,242,984	G→C	6.7%	intergenic (‑100/‑125)	PP_1083 ← / → tsaA	(2Fe‑2S)‑binding protein/peroxiredoxin
RA	1,242,985	T→C	6.7%	intergenic (‑101/‑124)	PP_1083 ← / → tsaA	(2Fe‑2S)‑binding protein/peroxiredoxin
RA	1,243,738	T→A	5.9%	intergenic (+27/+72)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,739	T→C	8.9%	intergenic (+28/+71)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,740	C→G	6.0%	intergenic (+29/+70)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,742	T→A	5.9%	intergenic (+31/+68)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,244,368	A→G	6.9%	G39G (GGT→GGC) ‡	rnt ←	ribonuclease T
RA	1,244,369	C→G	6.9%	G39A (GGT→GCT) ‡	rnt ←	ribonuclease T
RA	1,245,330	G→C	7.1%	A66A (GCC→GCG)	pyrC ←	dihydroorotase
RA	1,245,334	G→C	7.5%	P65R (CCG→CGG)	pyrC ←	dihydroorotase
RA	1,245,338	G→C	6.5%	R64G (CGC→GGC)	pyrC ←	dihydroorotase
RA	1,249,753	A→T	6.9%	intergenic (+26/+45)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,253,429	G→C	7.7%	intergenic (‑75/+32)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,433	G→C	7.7%	intergenic (‑79/+28)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,257,010	A→T	10.3%	noncoding (305/451 nt) F41I (TTC→ATC)	PP_mr14 ← capB ←	cspA regulatory region cold shock protein CapB
RA	1,278,715	C→T	9.6%	intergenic (‑542/+21)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,278,721	A→T	5.5%	intergenic (‑548/+15)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,327,121	C→T	51.7%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,352,492	A→G	8.0%	intergenic (‑135/+5)	PP_1178 ← / ← nrdA	hypothetical protein/ribonucleoside‑diphosphate reductase subunit alpha
RA	1,364,659	A→T	9.7%	intergenic (+29/+120)	dctA‑I → / ← PP_1189	C4‑dicarboxylate transport protein/hypothetical protein
RA	1,364,660	A→T	9.8%	intergenic (+30/+119)	dctA‑I → / ← PP_1189	C4‑dicarboxylate transport protein/hypothetical protein
RA	1,382,535	G→T	10.2%	L256I (CTC→ATC)	PP_1204 ←	lipoprotein
RA	1,382,537	T→A	9.8%	D255V (GAC→GTC)	PP_1204 ←	lipoprotein
RA	1,382,539	A→C	9.8%	D254E (GAT→GAG)	PP_1204 ←	lipoprotein
RA	1,388,037	G→T	6.1%	G151G (GGC→GGA)	PP_1209 ←	cold‑shock protein
RA	1,388,044	T→A	6.1%	D149V (GAC→GTC)	PP_1209 ←	cold‑shock protein
RA	1,388,051	A→C	6.2%	S147A (TCC→GCC)	PP_1209 ←	cold‑shock protein
RA	1,400,872	C→A	6.2%	intergenic (+35/‑134)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,874	A→T	5.7%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,400,876	T→G	5.7%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,403,590	G→A	50.0%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,591	T→C	53.9%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,410,289	T→A	8.0%	I320N (ATT→AAT)	nadA →	quinolinate synthase iron‑sulfur cluster subunit
RA	1,411,873	G→A	6.5%	A21V (GCT→GTT)	PP_1232 ←	hypothetical protein
RA	1,412,899	C→T	20.7%	R195C (CGC→TGC)	PP_1234 →	permease
RA	1,414,211	G→A	8.9%	S86S (AGC→AGT) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,414,212	C→G	8.8%	S86T (AGC→ACC) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,414,213	T→C	8.0%	S86G (AGC→GGC) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,416,520	T→C	6.6%	I297T (ATC→ACC)	PP_1238 →	lipoprotein
RA	1,416,934	A→C	9.6%	H61P (CAC→CCC)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,936	G→A	9.4%	V62M (GTG→ATG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,941	T→C	9.2%	H63H (CAT→CAC)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,943	G→T	9.4%	G64V (GGG→GTG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,425,650	T→C	8.3%	intergenic (+52/‑453)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,655	C→T	8.0%	intergenic (+57/‑448)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,656	A→G	7.9%	intergenic (+58/‑447)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,425,661	G→A	8.0%	intergenic (+63/‑442)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,445,385	G→C	6.1%	G337R (GGG→CGG) ‡	PP_1263 →	fusaric acid resistance protein
RA	1,445,386	G→C	5.2%	G337A (GGG→GCG) ‡	PP_1263 →	fusaric acid resistance protein
RA	1,464,200	T→C	9.5%	Q473R (CAG→CGG)	algX ←	alginate biosynthesis protein AlgX
RA	1,468,849	G→A	9.1%	L432F (CTC→TTC)	algK ←	alginate biosynthesis protein AlgK
RA	1,472,712	G→C	10.2%	Q39E (CAG→GAG)	alg8 ←	glycosyltransferase Alg8
RA	1,472,713	C→G	10.6%	S38S (TCG→TCC) ‡	alg8 ←	glycosyltransferase Alg8
RA	1,472,714	G→C	10.6%	S38W (TCG→TGG) ‡	alg8 ←	glycosyltransferase Alg8
RA	1,474,996	C→A	8.5%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,482,041	T→C	8.0%	S152G (AGT→GGT)	estB ←	carboxylesterase
RA	1,485,310	G→C	7.5%	A67P (GCC→CCC)	yhdY →	amino acid ABC transporter permease
RA	1,496,381	T→G	5.7%	C270W (TGT→TGG)	mdeA →	methionine gamma‑lyase
RA	1,496,382	G→C	5.8%	A271P (GCC→CCC) ‡	mdeA →	methionine gamma‑lyase
RA	1,496,383	C→A	5.7%	A271D (GCC→GAC) ‡	mdeA →	methionine gamma‑lyase
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,503,465	G→T	7.4%	E90* (GAG→TAG)	rplM →	50S ribosomal protein L13
RA	1,506,923	A→G	29.4%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	31.2%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	23.5%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,934	C→T	23.5%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,517,528	C→T	7.8%	R240C (CGT→TGT)	murE →	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
RA	1,544,489	C→A	31.1%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,492	G→C	25.7%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,494	C→G	30.0%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,499	C→G	30.1%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,501	G→C	30.0%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,504	T→G	23.8%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,585,139	A→T	8.0%	intergenic (‑126/‑250)	PP_1388 ← / → PP_1389	EmrB/QacA family drug resistance transporter/oxaloacetate decarboxylase
RA	1,591,987	T→G	12.1%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,594,061	T→C	7.3%	intergenic (‑259/+42)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,066	G→T	7.4%	intergenic (‑264/+37)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,067	C→G	7.4%	intergenic (‑265/+36)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,068	A→C	7.4%	intergenic (‑266/+35)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,607,848	G→A	9.7%	intergenic (‑315/+29)	PP_1408 ← / ← rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase
RA	1,622,907	C→G	8.9%	G150G (GGG→GGC)	PP_1422 ←	hypothetical protein
RA	1,625,207	G→T	12.2%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,208	A→C	8.7%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,637,296	T→C	10.0%	intergenic (+5/+61)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,299	T→C	9.4%	intergenic (+8/+58)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,307	A→G	15.7%	intergenic (+16/+50)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,309	C→T	15.7%	intergenic (+18/+48)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,315	T→C	16.4%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,325	A→T	19.1%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	17.3%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,336	G→A	10.7%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,342	A→G	8.9%	intergenic (+51/+15)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,344	C→T	9.2%	intergenic (+53/+13)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,647,135	C→G	5.4%	L74L (CTG→CTC) ‡	gcd ←	quinoprotein glucose dehydrogenase
RA	1,647,136	A→G	5.2%	L74P (CTG→CCG) ‡	gcd ←	quinoprotein glucose dehydrogenase
RA	1,647,927	G→A	100%	Y265Y (TAC→TAT)	oprB‑II ←	carbohydrate‑selective porin
RA	1,668,428	G→A	6.8%	intergenic (+53/‑129)	ffh → / → rpsP	signal recognition particle GTPase subunit/30S ribosomal protein S16
RA	1,668,429	T→C	6.8%	intergenic (+54/‑128)	ffh → / → rpsP	signal recognition particle GTPase subunit/30S ribosomal protein S16
RA	1,670,628	C→A	8.5%	intergenic (+51/‑44)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,679,058	C→T	5.3%	A175T (GCG→ACG)	PP_1474 ←	hypothetical protein
RA	1,683,248	C→G	15.7%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,683,251	C→G	15.8%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,687,514	A→T	7.3%	L30Q (CTG→CAG)	ydcV ←	polyamine ABC transporter permease
RA	1,691,378	C→G	6.9%	A109G (GCC→GGC)	PP_1487 →	hypothetical protein
RA	1,691,381	A→C	7.1%	E110A (GAG→GCG)	PP_1487 →	hypothetical protein
RA	1,703,248	A→G	18.7%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	18.8%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	20.0%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,704,636	T→A	11.5%	M1M (TTG→ATG) †‡	PP_1499 →	hypothetical protein
RA	1,704,637	T→A	11.1%	M1* (TTG→TAG) †‡	PP_1499 →	hypothetical protein
RA	1,707,227	G→C	20.3%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,230	G→C	17.6%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,715,273	C→T	7.7%	G73G (GGC→GGT)	PP_1510 →	carboxyvinyl‑carboxyphosphonate phosphorylmutase
RA	1,742,972	C→A	8.8%	L67L (CTG→CTT)	PP_1540 ←	hypothetical protein
RA	1,789,596	C→T	9.2%	A105V (GCC→GTC)	cdsA →	CTP:phosphatidate cytidyltransferase
RA	1,812,302	G→C	7.6%	A39G (GCC→GGC) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,303	C→A	7.6%	A39S (GCC→TCC) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,308	T→G	7.5%	Q37P (CAG→CCG) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,309	G→C	7.6%	Q37E (CAG→GAG) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,813,860	C→G	9.3%	A72G (GCC→GGC)	frmC →	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase
RA	1,818,484	A→G	9.2%	Y209C (TAC→TGC)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,818,489	C→T	7.2%	H211Y (CAT→TAT)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,818,492	A→G	7.6%	N212D (AAC→GAC)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,843,370	G→T	54.9%	T475N (ACC→AAC)	gacS ←	sensor protein GacS
RA	1,843,970	G→A	16.6%	A275V (GCG→GTG)	gacS ←	sensor protein GacS
RA	1,859,527	A→C	8.1%	intergenic (‑119/+37)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,529	T→A	8.3%	intergenic (‑121/+35)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,531	G→T	8.5%	intergenic (‑123/+33)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,863,240	T→A	8.1%	L309Q (CTG→CAG)	PP_1666 →	hypothetical protein
RA	1,871,376	T→A	9.6%	L217Q (CTG→CAG)	cobC →	adenosylcobinamide‑phosphate synthase subunit beta
RA	1,892,225	C→A	9.0%	P156Q (CCG→CAG)	PP_1697 →	transcriptional regulator, GntR family
RA	1,892,228	T→G	9.8%	L157R (CTG→CGG)	PP_1697 →	transcriptional regulator, GntR family
RA	1,910,411	G→A	6.4%	P134L (CCG→CTG)	PP_1710 ←	phthalate permease family MFS transporter
RA	1,918,256	C→G	7.2%	intergenic (‑32/+86)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,918,257	T→C	6.2%	intergenic (‑33/+85)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,918,258	G→A	6.3%	intergenic (‑34/+84)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,918,259	C→G	6.3%	intergenic (‑35/+83)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,935,746	C→G	7.0%	A16A (GCC→GCG)	PP_1736 →	hypothetical protein
RA	1,935,747	C→G	7.1%	R17G (CGC→GGC)	PP_1736 →	hypothetical protein
RA	1,940,411	G→C	8.8%	A289G (GCC→GGC)	PP_1740 ←	beta (1‑6) glucans synthase
RA	1,945,325	T→A	5.8%	L69Q (CTG→CAG)	PP_1745 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	1,948,185	G→C	8.3%	R490R (CGC→CGG) ‡	PP_1749 ←	acetyltransferase
RA	1,948,186	C→G	8.2%	R490P (CGC→CCC) ‡	PP_1749 ←	acetyltransferase
RA	1,948,187	G→C	8.2%	R490G (CGC→GGC) ‡	PP_1749 ←	acetyltransferase
RA	1,968,750	G→A	7.0%	A23A (GCC→GCT)	gph ←	phosphoglycolate phosphatase
RA	1,969,465	A→G	12.0%	W19R (TGG→CGG)	ubiG ←	ubiquinone biosynthesis O‑methyltransferase
RA	1,969,466	G→C	12.0%	R18R (CGC→CGG) ‡	ubiG ←	ubiquinone biosynthesis O‑methyltransferase
RA	1,969,467	C→T	11.9%	R18H (CGC→CAC) ‡	ubiG ←	ubiquinone biosynthesis O‑methyltransferase
RA	1,993,602	G→T	7.4%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,603	C→G	7.4%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,604	A→C	7.2%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,010,459	T→A	6.7%	E325D (GAA→GAT) ‡	PP_1792 ←	group 2 family glycosyl transferase
RA	2,010,460	T→A	6.6%	E325V (GAA→GTA) ‡	PP_1792 ←	group 2 family glycosyl transferase
RA	2,039,004	A→G	9.7%	L159S (TTG→TCG)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,039,008	G→A	10.3%	L158L (CTG→TTG)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,039,009	G→C	10.3%	N157K (AAC→AAG) ‡	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,039,010	T→C	10.4%	N157S (AAC→AGC) ‡	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,039,014	C→T	12.3%	D156N (GAC→AAC)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,063,192	C→A	16.7%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,193	A→C	16.7%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,194	T→C	16.2%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,201	G→A	18.4%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,205	T→C	21.6%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,208	G→A	22.1%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,212	T→C	20.0%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,219	G→A	19.3%	intergenic (+76/‑131)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,220	G→T	19.3%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,221	T→G	19.5%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,228	C→G	21.2%	intergenic (+85/‑122)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,064,592	C→A	13.1%	A136S (GCC→TCC)	PP_1841 ←	cytochrome c family protein
RA	2,064,598	G→C	13.6%	P134A (CCG→GCG)	PP_1841 ←	cytochrome c family protein
RA	2,064,604	T→G	13.6%	T132P (ACT→CCT)	PP_1841 ←	cytochrome c family protein
RA	2,068,151	A→T	18.2%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,068,152	A→T	18.5%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,097,457	C→T	8.2%	P135L (CCG→CTG)	gpx →	hydroperoxy fatty acid reductase Gpx1
RA	2,097,463	G→C	8.1%	S137T (AGT→ACT)	gpx →	hydroperoxy fatty acid reductase Gpx1
RA	2,136,104	A→T	10.7%	L216Q (CTG→CAG)	fadE ←	medium‑long chain acyl‑CoA dehydrogenase
RA	2,165,959	A→G	7.3%	G66G (GGT→GGC)	PP_5483 ←	hypothetical protein
RA	2,183,823	G→C	7.4%	intergenic (+54/‑120)	PP_5489 → / → PP_5490	hypothetical protein/site‑specific DNA recombinase
RA	2,183,827	T→A	6.5%	intergenic (+58/‑116)	PP_5489 → / → PP_5490	hypothetical protein/site‑specific DNA recombinase
RA	2,183,828	A→G	6.8%	intergenic (+59/‑115)	PP_5489 → / → PP_5490	hypothetical protein/site‑specific DNA recombinase
RA	2,183,830	G→C	6.9%	intergenic (+61/‑113)	PP_5489 → / → PP_5490	hypothetical protein/site‑specific DNA recombinase
RA	2,210,934	G→C	8.0%	G109R (GGC→CGC)	PP_1954 →	hypothetical protein
RA	2,220,718	A→T	8.0%	L303H (CTC→CAC)	PP_1960 ←	hypothetical protein
RA	2,227,422	T→A	7.4%	intergenic (‑21/‑426)	PP_1964 ← / → holB	dGMP/dTMP/dhydroxyCMP kinase/DNA polymerase III subunit delta'
RA	2,238,142	A→T	8.0%	F148I (TTC→ATC)	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,258,516	Δ1 bp	6.3%	coding (180/1005 nt)	asd →	aspartate‑semialdehyde dehydrogenase
RA	2,258,520:1	+G	6.3%	coding (184/1005 nt)	asd →	aspartate‑semialdehyde dehydrogenase
RA	2,265,668	A→C	9.6%	E243A (GAG→GCG)	folC →	bifunctional folypolyglutamate synthase/dihydrofolate synthase
RA	2,265,671	T→A	9.6%	L244Q (CTG→CAG)	folC →	bifunctional folypolyglutamate synthase/dihydrofolate synthase
RA	2,265,674	G→T	10.0%	R245L (CGC→CTC)	folC →	bifunctional folypolyglutamate synthase/dihydrofolate synthase
RA	2,273,062	C→G	14.9%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,066	A→T	15.9%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,070	C→G	15.7%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,080	C→T	12.0%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,282,770	T→G	47.6%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,774	G→C	45.0%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,775	G→C	45.0%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,779	C→A	42.9%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,297,648	T→A	6.1%	D825V (GAC→GTC)	sbcC ←	exonuclease subunit SbcC
RA	2,308,317	G→C	5.4%	A251A (GCC→GCG)	PP_2031 ←	hypothetical protein
RA	2,311,048	G→A	7.7%	V267I (GTA→ATA) ‡	PP_2033 →	hypothetical protein
RA	2,311,049	T→C	7.8%	V267A (GTA→GCA) ‡	PP_2033 →	hypothetical protein
RA	2,333,820	T→A	5.3%	L251Q (CTG→CAG)	fadA →	3‑ketoacyl‑CoA thiolase
RA	2,336,497	C→T	7.4%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,498	A→T	7.1%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,499	A→G	8.9%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,337,203	C→G	8.1%	V287L (GTT→CTT)	ybhD ←	DNA‑binding transcriptional regulator
RA	2,356,425	G→T	6.0%	L133M (CTG→ATG)	PP_2070 ←	AraC family transcriptional regulator
RA	2,369,767	T→C	10.2%	L862P (CTG→CCG) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,369,768	G→C	10.0%	L862L (CTG→CTC) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,369,769	G→A	10.0%	G863S (GGC→AGC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,381,402	T→G	6.9%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,381,403	C→A	7.0%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,392,617	C→G	7.9%	I382M (ATC→ATG)	PP_2097 →	sensory box protein
RA	2,395,583	G→C	12.9%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,585	A→T	13.3%	intergenic (‑193/+50)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,587	G→C	15.3%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,397,172	A→C	11.0%	F829V (TTC→GTC)	PP_2100 ←	two‑component system sensor protein
RA	2,397,173	G→C	11.4%	R828R (CGC→CGG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,177	A→T	10.6%	L827Q (CTG→CAG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,181	G→C	10.5%	P826A (CCG→GCG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,182	G→T	9.9%	D825E (GAC→GAA)	PP_2100 ←	two‑component system sensor protein
RA	2,420,598	Δ1 bp	14.0%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,602:1	+T	13.0%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,421,938	T→C	6.6%	W76R (TGG→CGG)	moeA →	molybdenum::molybdopterin ligase
RA	2,421,944	G→C	7.0%	G78R (GGC→CGC) ‡	moeA →	molybdenum::molybdopterin ligase
RA	2,421,946	C→G	7.1%	G78G (GGC→GGG) ‡	moeA →	molybdenum::molybdopterin ligase
RA	2,421,950	C→G	7.7%	P80A (CCG→GCG) ‡	moeA →	molybdenum::molybdopterin ligase
RA	2,421,952	G→C	7.6%	P80P (CCG→CCC) ‡	moeA →	molybdenum::molybdopterin ligase
RA	2,421,958	G→A	7.8%	P82P (CCG→CCA)	moeA →	molybdenum::molybdopterin ligase
RA	2,440,489	T→C	9.6%	intergenic (+54/‑22)	pcaF‑II → / → PP_2138	beta‑ketoadipyl‑CoA thiolase subunit beta/hypothetical protein
RA	2,444,415	A→C	7.8%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,444,419	G→T	7.8%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,420	A→C	7.7%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,424	G→T	7.8%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,453,596	G→A	10.3%	A508V (GCC→GTC)	mfd ←	transcription‑repair coupling factor
RA	2,468,261	G→C	10.2%	intergenic (‑25/+98)	PP_2161 ← / ← PP_2162	hypothetical protein/phosphonoacetaldehyde phosphonohydrolase‑like protein
RA	2,469,842	T→C	9.0%	intergenic (+11/+24)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,844	G→A	9.2%	intergenic (+13/+22)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,851	A→T	7.8%	intergenic (+20/+15)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,852	A→T	8.9%	intergenic (+21/+14)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,853	A→T	7.8%	intergenic (+22/+13)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,860	T→C	6.3%	intergenic (+29/+6)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,482,504	T→A	6.7%	intergenic (‑129/‑49)	PP_2176 ← / → PP_2177	transcriptional regulator, LysR family/transcriptional regulator
RA	2,482,511	T→A	7.6%	intergenic (‑136/‑42)	PP_2176 ← / → PP_2177	transcriptional regulator, LysR family/transcriptional regulator
RA	2,488,377	G→C	5.9%	intergenic (+233/‑169)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,518,456	C→G	9.5%	L292L (CTC→CTG)	PP_2211 →	AraC family transcriptional regulator
RA	2,531,904	T→A	10.2%	A53A (GCT→GCA)	PP_2222 →	hypothetical protein
RA	2,539,330	C→A	7.3%	E270D (GAG→GAT) ‡	PP_2231 ←	DMT superfamily permease
RA	2,539,331	T→G	6.9%	E270A (GAG→GCG) ‡	PP_2231 ←	DMT superfamily permease
RA	2,540,809	T→A	8.8%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,810	G→C	8.8%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,811	T→A	8.7%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,573,549	T→C	11.5%	I102T (ATC→ACC)	PP_2257 →	aerotaxis receptor
RA	2,573,551	C→T	11.5%	L103F (CTC→TTC)	PP_2257 →	aerotaxis receptor
RA	2,576,180	T→A	6.0%	F453I (TTC→ATC)	PP_2258 →	sensory box protein
RA	2,630,157	A→C	8.8%	K372Q (AAG→CAG)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,161	C→G	8.6%	A373G (GCC→GGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,163	G→C	8.5%	V374L (GTT→CTT)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,168	A→G	8.9%	A375A (GCA→GCG)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,169	C→T	9.1%	R376C (CGC→TGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,174	G→C	8.6%	K377N (AAG→AAC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,176	C→G	8.3%	A378G (GCC→GGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,634,516:1	+C	7.7%	coding (978/1872 nt)	PP_2304 →	peptidyl‑prolyl cis‑trans isomerase D
RA	2,634,523	Δ1 bp	7.1%	coding (985/1872 nt)	PP_2304 →	peptidyl‑prolyl cis‑trans isomerase D
RA	2,656,748	G→C	6.0%	S288R (AGC→AGG)	pabB ←	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex
RA	2,661,664	A→G	8.0%	K161E (AAG→GAG)	PP_2333 →	GntR family transcriptional regulator
RA	2,662,394	A→C	7.8%	E166D (GAA→GAC)	mmgF →	2‑methylisocitrate lyase
RA	2,696,290	C→G	5.5%	T64S (ACC→AGC)	PP_2363 →	hypothetical protein
RA	2,696,292	T→A	5.3%	L65M (TTG→ATG)	PP_2363 →	hypothetical protein
RA	2,696,295	C→G	5.7%	L66V (CTC→GTC)	PP_2363 →	hypothetical protein
RA	2,709,592	G→A	7.4%	V57V (GTG→GTA)	PP_2372 →	sugar‑binding protein
RA	2,710,330	G→T	15.2%	V303V (GTG→GTT)	PP_2372 →	sugar‑binding protein
RA	2,710,335	A→C	13.9%	E305A (GAA→GCA)	PP_2372 →	sugar‑binding protein
RA	2,716,692	G→A	8.3%	K469K (AAG→AAA)	cti →	esterified fatty acid cis/trans isomerase
RA	2,729,020	G→A	6.2%	A250T (GCC→ACC)	PP_2390 →	LysR family transcriptional regulator
RA	2,792,063	T→C	6.9%	Y159C (TAC→TGC)	PP_2444 ←	LysR family transcriptional regulator
RA	2,796,836	G→T	9.4%	intergenic (+20/‑112)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,837	A→T	9.4%	intergenic (+21/‑111)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,838	A→T	9.4%	intergenic (+22/‑110)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,839	A→C	9.5%	intergenic (+23/‑109)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,799,171	A→G	12.0%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,177	C→T	13.4%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,180	A→G	13.2%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,186	C→T	14.6%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,810,342	T→C	6.2%	L250P (CTC→CCC)	thrS →	threonine‑‑tRNA ligase
RA	2,812,778	C→G	6.3%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,781	A→G	6.3%	intergenic (+75/‑35)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,814,336	A→G	7.0%	E158G (GAA→GGA)	pheT →	phenylalanine‑‑tRNA ligase subunit beta
RA	2,820,597	C→T	13.8%	intergenic (+398/+114)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,820,598	G→C	13.0%	intergenic (+399/+113)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,820,599	A→G	14.0%	intergenic (+400/+112)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,844,678	A→T	6.4%	intergenic (‑38/+42)	PP_2495 ← / ← PP_2496	hypothetical protein/hypothetical protein
RA	2,844,679	A→T	8.9%	intergenic (‑39/+41)	PP_2495 ← / ← PP_2496	hypothetical protein/hypothetical protein
RA	2,844,682	A→T	6.3%	intergenic (‑42/+38)	PP_2495 ← / ← PP_2496	hypothetical protein/hypothetical protein
RA	2,844,683	A→T	7.4%	intergenic (‑43/+37)	PP_2495 ← / ← PP_2496	hypothetical protein/hypothetical protein
RA	2,850,718	G→A	7.8%	E170E (GAG→GAA)	PP_2503 →	3‑oxoacyl‑ACP reductase
RA	2,863,245	G→C	7.8%	R102P (CGG→CCG)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,883,422	C→T	8.1%	intergenic (+108/‑19)	PP_2538 → / → PP_2539	hypothetical protein/LysR family transcriptional regulator
RA	2,887,552	G→A	9.0%	L373L (CTG→TTG)	PP_2542 ←	GntR family transcriptional regulator
RA	2,887,557	T→C	9.3%	K371R (AAG→AGG)	PP_2542 ←	GntR family transcriptional regulator
RA	2,887,559	G→C	9.3%	L370L (CTC→CTG) ‡	PP_2542 ←	GntR family transcriptional regulator
RA	2,887,561	G→A	8.8%	L370F (CTC→TTC) ‡	PP_2542 ←	GntR family transcriptional regulator
RA	2,887,563	T→C	8.7%	H369R (CAC→CGC)	PP_2542 ←	GntR family transcriptional regulator
RA	2,887,566	T→C	8.5%	K368R (AAG→AGG)	PP_2542 ←	GntR family transcriptional regulator
RA	2,903,497	C→T	7.0%	V27I (GTA→ATA)	PP_2555 ←	hypothetical protein
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,922,092	G→A	7.2%	E42K (GAA→AAA)	PP_2562 →	hypothetical protein
RA	2,922,767	A→G	7.7%	M829T (ATG→ACG) ‡	PP_2563 ←	antibiotic biosynthesis protein
RA	2,922,768	T→A	8.7%	M829L (ATG→TTG) ‡	PP_2563 ←	antibiotic biosynthesis protein
RA	2,922,769	C→T	7.8%	A828A (GCG→GCA)	PP_2563 ←	antibiotic biosynthesis protein
RA	2,941,552	Δ1 bp	5.8%	coding (784/912 nt)	PP_2574 →	LysR family transcriptional regulator
RA	2,941,556:1	+G	5.6%	coding (788/912 nt)	PP_2574 →	LysR family transcriptional regulator
RA	2,951,334	G→C	9.1%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	13.5%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	13.5%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	10.0%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,958,790	T→C	15.4%	intergenic (+56/+86)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,799	G→C	14.8%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,800	T→C	13.8%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,803	G→C	13.3%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,977,675	T→A	7.1%	Q227L (CAG→CTG)	PP_2604 ←	major facilitator family transporter
RA	2,986,052	C→G	6.7%	G783R (GGC→CGC)	PP_2612 ←	membrane protein
RA	3,004,815	C→T	7.8%	R466C (CGC→TGC) ‡	PP_2627 →	membrane protein
RA	3,004,817	C→G	7.8%	R466R (CGC→CGG) ‡	PP_2627 →	membrane protein
RA	3,004,819	A→G	7.8%	H467R (CAC→CGC)	PP_2627 →	membrane protein
RA	3,024,592	A→G	6.9%	L69P (CTG→CCG)	PP_2640 ←	GNAT family acetyltransferase
RA	3,030,515	C→A	8.3%	intergenic (+515/‑179)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,517	T→C	8.1%	intergenic (+517/‑177)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,518	G→A	8.1%	intergenic (+518/‑176)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,520	T→G	8.2%	intergenic (+520/‑174)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,048,590	A→G	6.8%	intergenic (+45/‑251)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,051,593	G→A	9.5%	R98H (CGC→CAC)	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,052,702	C→T	8.1%	R468C (CGC→TGC)	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,057,908	T→C	7.4%	S222G (AGC→GGC)	PP_5538 ←	ABC transporter substrate‑binding protein
RA	3,077,170	C→T	7.7%	R228Q (CGG→CAG)	PP_2687 ←	hypothetical protein
RA	3,099,839	C→T	8.3%	G206G (GGC→GGT)	PP_2709 →	long‑chain fatty acid‑‑CoA ligase
RA	3,152,237	T→G	7.3%	L131R (CTG→CGG)	PP_2768 →	branched‑chain amino acid ABC transporter permease
RA	3,152,451	C→T	8.5%	A202A (GCC→GCT)	PP_2768 →	branched‑chain amino acid ABC transporter permease
RA	3,159,062	G→C	8.8%	A361P (GCA→CCA)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,198,902	A→T	14.3%	intergenic (‑246/+31)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,198,906	A→T	13.5%	intergenic (‑250/+27)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,198,910	A→T	15.1%	intergenic (‑254/+23)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,208,940	T→A	8.9%	V55E (GTG→GAG)	PP_2813 →	BNR domain‑containing protein
RA	3,209,677	T→A	7.6%	F301I (TTC→ATC) ‡	PP_2813 →	BNR domain‑containing protein
RA	3,209,678	T→A	7.6%	F301Y (TTC→TAC) ‡	PP_2813 →	BNR domain‑containing protein
RA	3,223,222	A→C	10.7%	intergenic (‑529/+31)	PP_2823 ← / ← PP_2824	methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator
RA	3,223,223	G→T	11.0%	intergenic (‑530/+30)	PP_2823 ← / ← PP_2824	methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator
RA	3,257,480	G→C	9.4%	A158G (GCC→GGC)	PP_2854 ←	hypothetical protein
RA	3,262,053	C→T	6.5%	G25R (GGG→AGG)	PP_2859 ←	hypothetical protein
RA	3,276,105	C→T	8.0%	S40L (TCG→TTG)	PP_2874 →	hypothetical protein
RA	3,312,690	A→C	6.5%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,328,147	G→C	7.2%	A20G (GCC→GGC)	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,346,117	G→C	5.6%	A128G (GCC→GGC)	PP_2942 ←	two‑component system response regulator
RA	3,346,123	C→A	7.2%	R126L (CGC→CTC)	PP_2942 ←	two‑component system response regulator
RA	3,349,961	C→A	7.2%	T153N (ACC→AAC) ‡	PP_2945 →	two‑component system sensor histidine kinase/response regulator
RA	3,349,962	C→G	7.2%	T153T (ACC→ACG) ‡	PP_2945 →	two‑component system sensor histidine kinase/response regulator
RA	3,349,963	T→G	8.6%	L154V (TTG→GTG)	PP_2945 →	two‑component system sensor histidine kinase/response regulator
RA	3,349,969	A→G	7.4%	T156A (ACC→GCC)	PP_2945 →	two‑component system sensor histidine kinase/response regulator
RA	3,352,168	A→G	6.3%	intergenic (+58/+84)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,174	A→G	7.6%	intergenic (+64/+78)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,175	G→C	7.2%	intergenic (+65/+77)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,176	C→T	7.3%	intergenic (+66/+76)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,389,594	C→A	8.3%	G29W (GGG→TGG)	PP_2991 ←	hypothetical protein
RA	3,389,595	T→A	8.5%	Q28H (CAA→CAT) ‡	PP_2991 ←	hypothetical protein
RA	3,389,596	T→G	8.5%	Q28P (CAA→CCA) ‡	PP_2991 ←	hypothetical protein
RA	3,400,104	C→A	6.9%	A156S (GCC→TCC)	PP_3006 ←	ECF family RNA polymerase sigma‑70 factor
RA	3,437,893	C→A	5.7%	T45K (ACG→AAG)	PP_3057 →	pectinesterase
RA	3,463,619	G→A	7.4%	P247S (CCA→TCA)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,490,195	G→A	7.7%	A399V (GCG→GTG)	clpV ←	protein ClpV1
RA	3,491,487	T→C	6.9%	E311G (GAG→GGG)	PP_3096 ←	hypothetical protein
RA	3,491,493	T→C	8.5%	K309R (AAG→AGG)	PP_3096 ←	hypothetical protein
RA	3,491,495	G→C	9.7%	L308L (CTC→CTG) ‡	PP_3096 ←	hypothetical protein
RA	3,491,497	G→A	8.5%	L308F (CTC→TTC) ‡	PP_3096 ←	hypothetical protein
RA	3,491,582	C→T	7.0%	Q279Q (CAG→CAA)	PP_3096 ←	hypothetical protein
RA	3,493,652	A→C	8.3%	L184R (CTG→CGG) ‡	PP_3097 ←	hypothetical protein
RA	3,493,653	G→T	8.3%	L184M (CTG→ATG) ‡	PP_3097 ←	hypothetical protein
RA	3,497,329	Δ1 bp	7.3%	coding (268/765 nt)	PP_5562 ←	hypothetical protein
RA	3,497,333	G→C	7.3%	V88V (GTC→GTG)	PP_5562 ←	hypothetical protein
RA	3,497,336:1	+G	7.7%	coding (261/765 nt)	PP_5562 ←	hypothetical protein
RA	3,532,699	T→C	8.1%	M162V (ATG→GTG)	PP_3121 ←	transcriptional regulator, LysR family
RA	3,542,318	A→G	9.8%	Y135Y (TAT→TAC)	galE ←	UDP‑glucose 4‑epimerase
RA	3,542,321	C→T	8.0%	P134P (CCG→CCA)	galE ←	UDP‑glucose 4‑epimerase
RA	3,553,793	C→T	8.0%	R154C (CGC→TGC)	PP_3138 →	VirK domain‑containing protein
RA	3,570,543	T→C	6.8%	M108V (ATG→GTG)	sad‑II ←	NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,570,548	G→C	7.3%	P106R (CCG→CGG)	sad‑II ←	NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,570,553	G→A	7.3%	H104H (CAC→CAT)	sad‑II ←	NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,580,628	A→G	6.2%	I255V (ATC→GTC) ‡	benR →	BenABC operon transcriptional activator
RA	3,580,630	C→G	7.6%	I255M (ATC→ATG) ‡	benR →	BenABC operon transcriptional activator
RA	3,596,231	C→T	7.9%	A259T (GCC→ACC)	nemA ←	FMN‑linked N‑ethylmaleimide reductase
RA	3,619,378	A→G	8.0%	Q410R (CAA→CGA)	codA →	cytosine deaminase/isoguanine deaminase
RA	3,630,322	T→C	6.6%	W315R (TGG→CGG)	PP_3200 →	hypothetical protein
RA	3,632,086	A→C	5.7%	E327A (GAG→GCG)	PP_5590 →	hypothetical protein
RA	3,638,813	G→C	5.9%	R270P (CGC→CCC)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,816	G→C	6.0%	S271T (AGC→ACC) ‡	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,817	C→G	6.0%	S271R (AGC→AGG) ‡	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,818	G→C	5.9%	V272L (GTG→CTG)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,638,821	G→C	9.4%	G273R (GGC→CGC)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,648,848	G→A	8.7%	intergenic (+325/+1366)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,653,495	G→A	11.8%	intergenic (+61/+37)	PP_3218 → / ← PP_3219	NtaA/SnaA/SoxA family monooxygenase/alkansulfonate monooxygenase
RA	3,679,968	A→T	5.5%	G89G (GGT→GGA)	PP_3245 ←	hypothetical protein
RA	3,680,737	C→G	8.3%	intergenic (+23/+21)	crtZ → / ← PP_3247	beta‑carotene hydroxylase/bile acid/Na+ symporter family transporter
RA	3,680,738	C→G	8.3%	intergenic (+24/+20)	crtZ → / ← PP_3247	beta‑carotene hydroxylase/bile acid/Na+ symporter family transporter
RA	3,692,619	T→A	9.4%	Q336L (CAG→CTG)	PP_3259 ←	acyl‑CoA dehydrogenase‑related protein
RA	3,698,182	T→C	7.4%	N97D (AAT→GAT)	ybhN ←	phospholipid modification enzyme
RA	3,699,638	T→A	6.0%	Q12L (CAG→CTG)	clsB ←	cardiolipin synthase
RA	3,701,978	C→T	6.6%	D136D (GAC→GAT)	PP_3267 →	Clp protease
RA	3,701,987	G→A	6.8%	L139L (CTG→CTA)	PP_3267 →	Clp protease
RA	3,701,988	T→C	6.6%	Y140H (TAT→CAT) ‡	PP_3267 →	Clp protease
RA	3,701,990	T→G	6.3%	Y140* (TAT→TAG) ‡	PP_3267 →	Clp protease
RA	3,717,745	C→A	8.3%	M18I (ATG→ATT) ‡	paaH ←	3‑hydroxyacyl‑CoA dehydrogenase PaaC
RA	3,717,746	A→T	8.3%	M18K (ATG→AAG) ‡	paaH ←	3‑hydroxyacyl‑CoA dehydrogenase PaaC
RA	3,717,747	T→G	8.2%	M18L (ATG→CTG) ‡	paaH ←	3‑hydroxyacyl‑CoA dehydrogenase PaaC
RA	3,723,150	G→A	7.2%	R136H (CGC→CAC)	PP_3288 →	universal stress protein family protein
RA	3,733,263	T→A	8.2%	intergenic (‑23/‑49)	PP_3299 ← / → PP_3300	lipoprotein/Transcriptional regulator, tetR family
RA	3,733,265	T→A	8.2%	intergenic (‑25/‑47)	PP_3299 ← / → PP_3300	lipoprotein/Transcriptional regulator, tetR family
RA	3,733,270	T→A	8.2%	intergenic (‑30/‑42)	PP_3299 ← / → PP_3300	lipoprotein/Transcriptional regulator, tetR family
RA	3,733,272	T→A	9.2%	intergenic (‑32/‑40)	PP_3299 ← / → PP_3300	lipoprotein/Transcriptional regulator, tetR family
RA	3,745,968	C→G	6.8%	R418R (CGC→CGG)	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,753,595	G→T	8.9%	A96A (GCC→GCA)	PP_3316 ←	chaperone‑associated ATPase
RA	3,753,598	A→C	8.5%	V95V (GTT→GTG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,760,453	A→G	6.9%	intergenic (+111/‑200)	folEB → / → PP_3325	GTP cyclohydrolase I/ferric siderophore receptor
RA	3,774,247	C→G	11.5%	A317G (GCC→GGC)	PP_5743 →	TonB‑dependent receptor protein
RA	3,793,892	A→T	7.4%	L211M (TTG→ATG)	PP_3355 ←	beta‑ketothiolase
RA	3,793,897	A→T	7.4%	I209N (ATT→AAT)	PP_3355 ←	beta‑ketothiolase
RA	3,837,985	G→T	5.9%	R527M (AGG→ATG)	PP_3388 →	hypothetical protein
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,853,771	T→C	6.8%	intergenic (+54/+28)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,772	G→A	7.2%	intergenic (+55/+27)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,778	A→G	6.9%	intergenic (+61/+21)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,872,030	G→T	8.3%	F117L (TTC→TTA) ‡	PP_3420 ←	sensor histidine kinase
RA	3,872,032	A→C	8.2%	F117V (TTC→GTC) ‡	PP_3420 ←	sensor histidine kinase
RA	3,884,637	A→G	7.0%	Q174Q (CAA→CAG)	PP_3429 →	two component system response regulator/sensor histidine kinase
RA	3,884,638	C→T	6.8%	L175L (CTG→TTG)	PP_3429 →	two component system response regulator/sensor histidine kinase
RA	3,894,391	A→C	8.2%	L223R (CTG→CGG) ‡	yegH ←	putative transporter
RA	3,894,392	G→T	8.8%	L223M (CTG→ATG) ‡	yegH ←	putative transporter
RA	3,908,623	A→G	8.3%	D191G (GAC→GGC)	PP_3450 →	TPR repeat‑containing protein
RA	3,908,626	T→A	8.3%	L192Q (CTG→CAG)	PP_3450 →	TPR repeat‑containing protein
RA	3,908,629	C→T	9.1%	A193V (GCC→GTC)	PP_3450 →	TPR repeat‑containing protein
RA	3,912,130	A→G	5.4%	E159G (GAG→GGG)	PP_3452 →	GGDEF domain‑containing protein
RA	3,920,270	A→G	8.2%	L499P (CTG→CCG)	acs ←	acyl‑CoA synthetase
RA	3,920,273	C→T	8.0%	R498Q (CGG→CAG)	acs ←	acyl‑CoA synthetase
RA	3,923,896	C→G	5.7%	E306D (GAG→GAC)	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,924,769	T→C	6.9%	V15V (GTA→GTG)	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,924,772	T→G	6.4%	E14D (GAA→GAC) ‡	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,924,773	T→A	7.0%	E14V (GAA→GTA) ‡	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,924,774	C→A	6.9%	E14* (GAA→TAA) ‡	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,924,777	G→A	7.0%	H13Y (CAC→TAC)	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,935,581	C→G	8.4%	intergenic (‑169/+109)	PP_3467 ← / ← PP_3468	sigma‑54 dependent transcriptional regulator/hypothetical protein
RA	3,941,514	T→A	5.4%	E15V (GAA→GTA)	PP_3476 ←	type II secretion system protein G
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,955,081	G→A	7.0%	V1768V (GTC→GTT)	mnxG ←	manganese‑oxidizing multicopper oxidase
RA	3,969,310	C→T	9.1%	intergenic (+259/‑56)	PP_3498 → / → PP_3499	transposase/transposase
RA	3,988,999	T→A	7.9%	L506Q (CTG→CAG)	oplA →	5‑oxoprolinase A
RA	3,989,002	A→T	8.1%	D507V (GAC→GTC)	oplA →	5‑oxoprolinase A
RA	3,989,005	C→A	7.4%	A508D (GCC→GAC)	oplA →	5‑oxoprolinase A
RA	3,989,008	G→T	8.2%	G509V (GGG→GTG)	oplA →	5‑oxoprolinase A
RA	3,989,011	A→C	7.9%	H510P (CAC→CCC)	oplA →	5‑oxoprolinase A
RA	3,989,014	T→G	7.8%	V511G (GTC→GGC)	oplA →	5‑oxoprolinase A
RA	3,989,017	A→T	7.4%	D512V (GAC→GTC)	oplA →	5‑oxoprolinase A
RA	3,989,020	T→A	7.7%	L513Q (CTG→CAG)	oplA →	5‑oxoprolinase A
RA	3,997,292	Δ1 bp	9.1%	intergenic (‑130/‑23)	PP_3525 ← / → PP_3526	hypothetical protein/AraC family transcriptional regulator
RA	4,001,039	G→A	5.7%	A241T (GCC→ACC)	dmoA‑II →	dimethyl‑sulfide monooxygenase
RA	4,002,830	G→T	10.0%	G30C (GGC→TGC)	PP_3531 →	hypothetical protein
RA	4,002,833	A→C	9.8%	I31L (ATT→CTT)	PP_3531 →	hypothetical protein
RA	4,047,209	A→G	7.6%	intergenic (+22/‑241)	PP_3568 → / → quiA	hypothetical protein/quinate dehydrogenase
RA	4,049,907	A→G	47.4%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,910	C→G	42.1%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,913	C→T	42.1%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,053,476	A→T	10.3%	Q17L (CAG→CTG)	PP_3573 →	monooxygenase
RA	4,065,802	T→A	7.6%	Q53L (CAG→CTG)	PP_3582 ←	RND transporter outer membrane protein
RA	4,065,805	G→A	8.2%	A52V (GCG→GTG)	PP_3582 ←	RND transporter outer membrane protein
RA	4,065,807	C→G	8.2%	A51A (GCG→GCC)	PP_3582 ←	RND transporter outer membrane protein
RA	4,065,810	C→G	8.2%	T50T (ACG→ACC) ‡	PP_3582 ←	RND transporter outer membrane protein
RA	4,065,812	T→C	7.9%	T50A (ACG→GCG) ‡	PP_3582 ←	RND transporter outer membrane protein
RA	4,065,815	T→A	8.2%	S49C (AGC→TGC)	PP_3582 ←	RND transporter outer membrane protein
RA	4,069,392	C→T	6.0%	V923I (GTC→ATC)	mdtB ←	multidrug transporter membrane protein
RA	4,077,797	G→A	6.1%	G381E (GGG→GAG)	PP_3588 →	Bcr/CflA family multidrug resistance transporter
RA	4,079,170	T→A	9.4%	E9D (GAA→GAT) ‡	sdaC ←	serine:H+ symport permease
RA	4,079,171	T→A	9.4%	E9V (GAA→GTA) ‡	sdaC ←	serine:H+ symport permease
RA	4,080,919	A→T	9.1%	intergenic (‑143/+20)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,080,920	A→T	9.1%	intergenic (‑144/+19)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,089,682	T→C	6.4%	L250P (CTG→CCG)	kdgD →	5‑dehydro‑4‑deoxyglucarate dehydratase
RA	4,096,649	T→G	5.1%	S86A (TCG→GCG) ‡	PP_5608 →	hypothetical protein
RA	4,096,650	C→A	5.1%	S86* (TCG→TAG) ‡	PP_5608 →	hypothetical protein
RA	4,119,669	C→T	6.2%	R29C (CGT→TGT)	adhB →	alcohol dehydrogenase cytochrome c subunit
RA	4,125,301	A→T	16.7%	intergenic (+30/+51)	PP_3628 → / ← PP_3629	choline/carnitine/betaine transporter family protein/hypothetical protein
RA	4,133,635	C→T	6.5%	A112T (GCG→ACG)	PP_3637 ←	sulfonate ABC transporter ATP‑binding protein
RA	4,133,641	T→C	6.6%	R110G (AGG→GGG)	PP_3637 ←	sulfonate ABC transporter ATP‑binding protein
RA	4,133,642	G→A	6.9%	P109P (CCC→CCT)	PP_3637 ←	sulfonate ABC transporter ATP‑binding protein
RA	4,133,648	A→G	6.9%	R107R (CGT→CGC)	PP_3637 ←	sulfonate ABC transporter ATP‑binding protein
RA	4,138,585	C→A	8.5%	G28G (GGC→GGA)	PP_3643 →	oxidoreductase
RA	4,138,586	T→G	9.3%	S29A (TCG→GCG) ‡	PP_3643 →	oxidoreductase
RA	4,138,588	G→C	9.5%	S29S (TCG→TCC) ‡	PP_3643 →	oxidoreductase
RA	4,156,141	A→T	13.7%	L217* (TTA→TAA)	PP_3659 ←	transcriptional regulator, AraC family
RA	4,158,872	C→T	8.9%	A294A (GCC→GCT)	PP_3661 →	membrane protein
RA	4,158,875	G→T	8.8%	V295V (GTG→GTT)	PP_3661 →	membrane protein
RA	4,158,876	A→C	9.0%	N296H (AAC→CAC)	PP_3661 →	membrane protein
RA	4,158,879	A→G	8.9%	S297G (AGC→GGC)	PP_3661 →	membrane protein
RA	4,159,143	C→T	17.2%	intergenic (+91/‑118)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,162,099	T→C	7.5%	intergenic (‑43/+34)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,181,401	A→G	9.7%	E422E (GAA→GAG)	PP_3678 →	hypothetical protein
RA	4,187,972	G→A	7.9%	intergenic (+77/‑133)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,187,973	C→G	7.5%	intergenic (+78/‑132)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,187,974	T→C	7.9%	intergenic (+79/‑131)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,206,507	T→A	7.0%	R423S (AGA→AGT)	PP_3691 ←	DNA helicase‑related protein
RA	4,227,983	C→T	6.8%	E92K (GAA→AAA)	PP_5624 ←	hypothetical protein
RA	4,261,967	C→G	8.4%	E265D (GAG→GAC) ‡	PP_3734 ←	ABC transporter permease
RA	4,261,968	T→A	7.0%	E265V (GAG→GTG) ‡	PP_3734 ←	ABC transporter permease
RA	4,261,969	C→G	7.9%	E265Q (GAG→CAG) ‡	PP_3734 ←	ABC transporter permease
RA	4,282,243	G→A	6.2%	Y329Y (TAC→TAT)	PP_3753 ←	AraC family transcriptional regulator
RA	4,289,020:1	+C	7.2%	coding (103/822 nt)	PP_3760 ←	methyltransferase
RA	4,289,025	Δ1 bp	7.2%	coding (98/822 nt)	PP_3760 ←	methyltransferase
RA	4,289,242	Δ1 bp	8.0%	coding (3345/3468 nt)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,296,174	C→T	12.2%	intergenic (+93/‑132)	PP_3765 → / → gloA	H‑NS family protein MvaT/lactoylglutathione lyase
RA	4,296,175	A→G	12.2%	intergenic (+94/‑131)	PP_3765 → / → gloA	H‑NS family protein MvaT/lactoylglutathione lyase
RA	4,315,892	G→A	9.5%	V297I (GTA→ATA)	PP_3787 →	hypothetical protein
RA	4,318,934	G→C	7.4%	G399R (GGC→CGC)	PP_3789 →	efflux transporter
RA	4,318,939	C→A	7.7%	N400K (AAC→AAA)	PP_3789 →	efflux transporter
RA	4,318,940	T→G	7.7%	F401V (TTT→GTT)	PP_3789 →	efflux transporter
RA	4,318,945	G→C	7.6%	A402A (GCG→GCC)	PP_3789 →	efflux transporter
RA	4,340,589	G→A	6.9%	V82M (GTG→ATG)	PP_3814 →	polyamine ABC transportersubstrate‑binding protein
RA	4,344,302	A→T	19.4%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,304	C→T	19.3%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,305	A→G	17.6%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,310	C→G	18.7%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,313	C→G	19.4%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,318	C→T	21.9%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,319	A→G	22.6%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,321	A→T	21.9%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,348,705	A→G	68.9%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,357,746	T→C	12.0%	intergenic (+92/‑162)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,357,747	G→A	12.0%	intergenic (+93/‑161)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,367,695	C→T	9.7%	R118H (CGT→CAT)	PP_3844 ←	D‑aminopeptidase
RA	4,377,831	T→C	5.8%	R116G (AGA→GGA)	PP_5638 ←	hypothetical protein
RA	4,382,821	G→A	12.5%	intergenic (‑32/+230)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,382,822	T→C	11.1%	intergenic (‑33/+229)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,399,566	T→G	8.9%	R108R (CGA→CGC) ‡	PP_3878 ←	minor capsid protein C
RA	4,399,567	C→A	8.4%	R108L (CGA→CTA) ‡	PP_3878 ←	minor capsid protein C
RA	4,403,756	C→A	8.3%	R94M (AGG→ATG) ‡	PP_3883 ←	holin
RA	4,403,757	T→G	8.3%	R94R (AGG→CGG) ‡	PP_3883 ←	holin
RA	4,405,314	C→T	8.2%	G83R (GGG→AGG)	PP_3886 ←	hypothetical protein
RA	4,405,320	T→C	8.0%	M81V (ATG→GTG)	PP_3886 ←	hypothetical protein
RA	4,405,321	G→A	8.0%	H80H (CAC→CAT)	PP_3886 ←	hypothetical protein
RA	4,405,327	A→G	8.3%	P78P (CCT→CCC)	PP_3886 ←	hypothetical protein
RA	4,415,032	T→C	5.7%	intergenic (+141/+27)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,431,270	T→G	6.2%	L347W (TTG→TGG) ‡	PP_3925 →	hypothetical protein
RA	4,431,271	G→C	6.2%	L347F (TTG→TTC) ‡	PP_3925 →	hypothetical protein
RA	4,431,272	C→A	6.3%	Q348K (CAG→AAG)	PP_3925 →	hypothetical protein
RA	4,459,104	C→T	5.9%	F43F (TTC→TTT)	trkH‑I →	potassium transporter
RA	4,463,925	T→A	8.8%	L130* (TTG→TAG)	PP_3956 →	hypothetical protein
RA	4,477,813	T→G	6.8%	Q60P (CAG→CCG) ‡	PP_3968 ←	sensor histidine kinase
RA	4,477,814	G→C	6.7%	Q60E (CAG→GAG) ‡	PP_3968 ←	sensor histidine kinase
RA	4,477,817	G→C	6.8%	H59D (CAT→GAT)	PP_3968 ←	sensor histidine kinase
RA	4,477,818	C→A	7.8%	A58A (GCG→GCT)	PP_3968 ←	sensor histidine kinase
RA	4,483,550	A→T	5.6%	intergenic (‑88/‑120)	PP_3975 ← / → PP_3976	hypothetical protein/isochorismatase family hydrolase
RA	4,486,215	G→T	12.5%	A29A (GCG→GCT)	PP_3978 →	hypothetical protein
RA	4,486,216	A→C	12.3%	S30R (AGC→CGC)	PP_3978 →	hypothetical protein
RA	4,500,179	C→T	8.3%	G295R (GGA→AGA)	PP_3989 ←	DNA‑cytosine methyltransferase
RA	4,502,920	G→T	8.6%	M183I (ATG→ATT)	xanP →	xanthine permease
RA	4,502,922	C→G	8.6%	A184G (GCC→GGC)	xanP →	xanthine permease
RA	4,502,924	A→C	8.4%	N185H (AAT→CAT)	xanP →	xanthine permease
RA	4,518,698	C→A	6.1%	L274L (CTG→CTT)	clpA ←	ATP‑dependent serine protease
RA	4,518,706	T→C	6.0%	K272E (AAG→GAG)	clpA ←	ATP‑dependent serine protease
RA	4,518,709	A→G	6.1%	F271L (TTC→CTC)	clpA ←	ATP‑dependent serine protease
RA	4,518,715	T→G	6.7%	K269Q (AAG→CAG)	clpA ←	ATP‑dependent serine protease
RA	4,528,353	T→A	13.4%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,529,781	G→A	8.3%	S72S (TCG→TCA)	PP_4018 →	acetyltransferase
RA	4,582,559	A→T	8.0%	L290* (TTG→TAG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,582,560	A→T	8.0%	L290M (TTG→ATG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	51.7%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,057:1	+C	44.8%	intergenic (+140/+75)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,605,506	G→C	7.4%	E308Q (GAG→CAG)	PP_4077 →	hypothetical protein
RA	4,613,261	C→T	9.7%	R39R (CGC→CGT)	PP_4084 →	hypothetical protein
RA	4,621,021	Δ1 bp	100%	coding (31/417 nt)	PP_5654 →	phosphotriesterase
RA	4,641,127	C→T	8.1%	A226T (GCT→ACT)	gabP‑IV ←	gamma‑aminobutyrate permease
RA	4,649,982	T→G	10.2%	H311P (CAC→CCC)	PP_4113 ←	hypothetical protein
RA	4,649,985	T→A	10.0%	K310M (AAG→ATG) ‡	PP_4113 ←	hypothetical protein
RA	4,649,986	T→A	10.0%	K310* (AAG→TAG) ‡	PP_4113 ←	hypothetical protein
RA	4,649,989	C→A	10.4%	G309C (GGC→TGC)	PP_4113 ←	hypothetical protein
RA	4,658,398	A→C	8.3%	E345A (GAA→GCA) ‡	nuoC →	NADH‑quinone oxidoreductase subunit C/D
RA	4,658,399	A→T	8.3%	E345D (GAA→GAT) ‡	nuoC →	NADH‑quinone oxidoreductase subunit C/D
RA	4,658,400	G→T	8.2%	A346S (GCG→TCG)	nuoC →	NADH‑quinone oxidoreductase subunit C/D
RA	4,666,312	G→C	5.3%	S26S (TCG→TCC)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,681,789:1	+C	5.8%	coding (79/1431 nt)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,681,795	T→A	5.3%	L29M (TTG→ATG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,681,796	T→A	5.4%	L29* (TTG→TAG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,734,891	C→G	6.7%	M248I (ATG→ATC) ‡	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,734,893	T→A	6.9%	M248L (ATG→TTG) ‡	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,734,894	T→A	6.9%	E247D (GAA→GAT) ‡	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,734,896	C→G	6.7%	E247Q (GAA→CAA) ‡	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,758,141	G→C	10.6%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,779,407	C→A	10.7%	intergenic (‑141/+20)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,408	A→T	10.4%	intergenic (‑142/+19)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,409	T→G	10.4%	intergenic (‑143/+18)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,790,319	T→A	7.5%	E1174V (GAG→GTG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,790,888	G→A	8.3%	N984N (AAC→AAT)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,796,612	C→T	33.3%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	33.1%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	22.7%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	22.7%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	25.0%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,808,839	T→C	5.4%	L132L (TTG→CTG)	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,818,565	C→G	7.5%	D4209H (GAC→CAC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,838,293	C→T	6.9%	G19G (GGC→GGT)	ccoP‑I →	cbb3‑type cytochrome c oxidase subunit
RA	4,839,977	C→G	8.3%	P115A (CCG→GCG)	ccoN‑II →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,861,127	A→G	12.9%	intergenic (‑78/+159)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,873,746	C→A	6.2%	intergenic (‑127/+31)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,873,747	T→A	6.2%	intergenic (‑128/+30)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,873,748	T→G	6.2%	intergenic (‑129/+29)	aqpZ ← / ← PP_4283	aquaporin Z/GntR family transcriptional regulator
RA	4,904,996	A→C	6.3%	intergenic (‑163/+72)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,904,997	A→T	6.6%	intergenic (‑164/+71)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,904,998	G→T	7.4%	intergenic (‑165/+70)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,909,921	C→G	11.3%	intergenic (+314/+165)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,909,922	C→G	11.8%	intergenic (+315/+164)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,928,970	T→A	8.7%	K401M (AAG→ATG)	cheA ←	chemotaxis histidine kinase CheA
RA	4,945,389	G→C	8.9%	intergenic (+749/+49)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,945,392	G→C	7.7%	intergenic (+752/+46)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,953,269	C→A	10.9%	R388L (CGG→CTG)	PP_4363 ←	two‑component system sensor histidine kinase/response regulator
RA	4,962,589	T→A	6.6%	K356* (AAG→TAG)	fleS ←	two‑component system sensor histidine kinase FleS
RA	4,964,390	T→C	18.4%	D323G (GAC→GGC)	fleQ ←	transcriptional regulator FleQ
RA	4,964,429	A→G	28.8%	F310S (TTC→TCC)	fleQ ←	transcriptional regulator FleQ
RA	4,964,613	C→T	7.8%	D249N (GAC→AAC)	fleQ ←	transcriptional regulator FleQ
RA	4,964,846	A→G	23.8%	L171P (CTG→CCG)	fleQ ←	transcriptional regulator FleQ
RA	4,972,883	T→A	5.5%	Q222L (CAG→CTG)	flgL ←	flagellar hook‑associated protein FlgL
RA	4,976,207	A→C	9.9%	G188G (GGT→GGG)	flgJ ←	peptidoglycan hydrolase FlgJ
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,986,048	C→G	8.9%	P97R (CCG→CGG)	flgA →	flagella basal body P‑ring formation protein
RA	5,000,740	T→C	5.5%	intergenic (+210/‑1476)	PP_4407 → / → PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
RA	5,015,912	A→T	7.3%	intergenic (‑175/+59)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,913	A→T	5.9%	intergenic (‑176/+58)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,025,783	G→A	8.5%	D33N (GAC→AAC)	PP_4430 →	threonine dehydratase
RA	5,067,029	C→T	8.9%	A170T (GCA→ACA)	PP_4464 ←	LysR family transcriptional regulator
RA	5,107,492	C→G	7.8%	G207A (GGC→GCC)	ydiJ ←	putative oxidoreductase
RA	5,107,497	C→G	6.7%	A205A (GCG→GCC)	ydiJ ←	putative oxidoreductase
RA	5,124,124	T→C	5.5%	H3R (CAT→CGT)	PP_4510 ←	hypothetical protein
RA	5,125,365	T→C	6.2%	L53P (CTG→CCG)	PP_4512 →	DMT superfamily permease
RA	5,125,368	C→A	6.1%	A54D (GCC→GAC)	PP_4512 →	DMT superfamily permease
RA	5,125,370	G→C	7.1%	G55R (GGT→CGT) ‡	PP_4512 →	DMT superfamily permease
RA	5,125,372	T→G	6.1%	G55G (GGT→GGG) ‡	PP_4512 →	DMT superfamily permease
RA	5,129,326	A→C	5.3%	F693C (TTC→TGC)	recQ ←	ATP‑dependent DNA 3'‑5' helicase
RA	5,129,328	C→G	5.3%	Q692H (CAG→CAC) ‡	recQ ←	ATP‑dependent DNA 3'‑5' helicase
RA	5,129,330	G→T	5.3%	Q692K (CAG→AAG) ‡	recQ ←	ATP‑dependent DNA 3'‑5' helicase
RA	5,130,440	C→G	6.9%	D322H (GAC→CAC)	recQ ←	ATP‑dependent DNA 3'‑5' helicase
RA	5,153,310	C→A	9.1%	intergenic (‑1387/+27)	PP_5696 ← / ← PP_4537	hypothetical protein/membrane protein
RA	5,153,311	C→G	9.1%	intergenic (‑1388/+26)	PP_5696 ← / ← PP_4537	hypothetical protein/membrane protein
RA	5,153,312	T→G	8.5%	intergenic (‑1389/+25)	PP_5696 ← / ← PP_4537	hypothetical protein/membrane protein
RA	5,171,438	T→A	10.6%	M508L (ATG→TTG)	fadD‑I ←	long‑chain‑fatty acid‑‑CoA ligase
RA	5,171,442	C→G	10.1%	P506P (CCG→CCC)	fadD‑I ←	long‑chain‑fatty acid‑‑CoA ligase
RA	5,171,446	T→A	10.9%	K505M (AAG→ATG)	fadD‑I ←	long‑chain‑fatty acid‑‑CoA ligase
RA	5,182,059	G→T	14.2%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	14.7%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	13.8%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,072	A→C	10.6%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,846	T→G	7.4%	R112R (CGT→CGG)	PP_4562 →	hypothetical protein
RA	5,182,847	C→A	7.4%	P113T (CCG→ACG)	PP_4562 →	hypothetical protein
RA	5,182,854	G→T	7.6%	G115V (GGC→GTC)	PP_4562 →	hypothetical protein
RA	5,212,487	A→G	5.5%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,488	C→A	5.6%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,491	T→G	5.2%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,235,720	G→A	5.8%	A352T (GCC→ACC)	fecA →	outer membrane ferric citrate porin
RA	5,237,540	C→T	8.4%	intergenic (+23/‑1)	PP_5700 → / → PP_4614	hypothetical protein/hypothetical protein
RA	5,237,541	T→C	8.2%	M1M (TTG→CTG) †‡	PP_4614 →	hypothetical protein
RA	5,237,542	T→A	8.2%	M1* (TTG→TAG) †‡	PP_4614 →	hypothetical protein
RA	5,237,543	G→A	8.2%	M1L (TTG→TTA) †‡	PP_4614 →	hypothetical protein
RA	5,237,544	A→G	8.3%	S2G (AGC→GGC)	PP_4614 →	hypothetical protein
RA	5,238,932	T→A	8.0%	intergenic (+240/‑41)	PP_5701 → / → PP_4616	hypothetical protein/hypothetical protein
RA	5,240,567	C→G	12.2%	H43Q (CAC→CAG)	PP_4618 →	hypothetical protein
RA	5,240,569	A→T	11.7%	D44V (GAC→GTC)	PP_4618 →	hypothetical protein
RA	5,240,571	C→G	11.8%	L45V (CTG→GTG)	PP_4618 →	hypothetical protein
RA	5,244,248	G→C	5.7%	R78R (CGC→CGG)	hmgA ←	homogentisate 1,2‑dioxygenase
RA	5,293,717	A→C	5.4%	C224G (TGC→GGC)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,719	A→T	5.4%	I223N (ATT→AAT)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,293,725	T→C	5.4%	D221G (GAT→GGT)	mmsA‑II ←	methylmalonate‑semialdehyde dehydrogenase
RA	5,302,657	G→A	8.9%	A372A (GCC→GCT)	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,302,660	C→G	7.4%	E371D (GAG→GAC) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,302,661	T→A	7.8%	E371V (GAG→GTG) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,302,662	C→G	7.9%	E371Q (GAG→CAG) ‡	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,302,665	T→C	7.9%	S370G (AGC→GGC)	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,319,173	C→A	9.1%	K67N (AAG→AAT) ‡	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,319,174	T→A	8.3%	K67M (AAG→ATG) ‡	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,319,175	T→G	8.3%	K67Q (AAG→CAG) ‡	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,325,511	T→A	11.3%	noncoding (133/149 nt)	PP_mr52 →	PrrF ncRNA
RA	5,341,804	G→A	7.1%	A38A (GCG→GCA)	panC →	pantothenate synthetase
RA	5,342,614	T→C	12.4%	intergenic (+60/‑147)	panC → / → pgi‑II	pantothenate synthetase/glucose 6‑phosphate isomerase
RA	5,346,102	C→G	7.0%	R500R (CGC→CGG)	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,103	G→C	7.0%	D501H (GAT→CAT)	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,106	G→C	7.0%	A502P (GCC→CCC) ‡	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,107	C→G	7.1%	A502G (GCC→GGC) ‡	acsA‑II →	acetyl‑CoA synthetase
RA	5,348,043	A→G	6.2%	N173D (AAT→GAT)	PP_4704 →	hypothetical protein
RA	5,356,515	T→G	7.5%	E749A (GAG→GCG)	infB ←	translation initiation factor IF‑2
RA	5,356,518	C→A	7.6%	R748L (CGC→CTC)	infB ←	translation initiation factor IF‑2
RA	5,356,815	A→C	7.5%	V649G (GTT→GGT)	infB ←	translation initiation factor IF‑2
RA	5,368,319	C→T	6.9%	A131T (GCC→ACC)	greA ←	transcription elongation factor GreA
RA	5,380,162	C→T	8.7%	intergenic (+73/+35)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,380,163	G→T	8.6%	intergenic (+74/+34)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,380,164	A→C	8.2%	intergenic (+75/+33)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,380,165	A→G	8.4%	intergenic (+76/+32)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,381,267	T→C	9.8%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	9.5%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,269	G→A	10.0%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,418,999	G→A	8.4%	A24A (GCC→GCT)	PP_4758 ←	MFS transporter
RA	5,451,612	A→G	5.6%	E48G (GAG→GGG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,451,616	C→G	5.6%	L49L (CTC→CTG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,458,892:1	+A	10.9%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,898	Δ1 bp	12.0%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,468,073:1	+A	9.1%	coding (819/1047 nt)	mltB ←	membrane‑bound lytic murein transglycosylase B
RA	5,468,078	Δ1 bp	9.1%	coding (814/1047 nt)	mltB ←	membrane‑bound lytic murein transglycosylase B
RA	5,472,878	T→A	10.2%	Y226F (TAT→TTT) ‡	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,472,879	A→C	10.2%	Y226D (TAT→GAT) ‡	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,472,882	G→T	9.8%	L225I (CTA→ATA)	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,472,883	T→A	10.0%	E224D (GAA→GAT)	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,475,315	C→T	6.4%	Y72Y (TAC→TAT)	PP_4812 →	3‑methyladenine DNA glycosylase
RA	5,488,275	T→G	8.3%	L535R (CTG→CGG)	PP_4824 →	two‑component system sensor histidine kinase/response regulator
RA	5,489,780	A→C	5.8%	M88L (ATG→CTG) ‡	PP_4825 →	MarC family membrane protein
RA	5,489,781	T→A	5.9%	M88K (ATG→AAG) ‡	PP_4825 →	MarC family membrane protein
RA	5,489,782	G→T	6.0%	M88I (ATG→ATT) ‡	PP_4825 →	MarC family membrane protein
RA	5,490,656	C→G	6.1%	V43L (GTT→CTT)	PP_5714 ←	hypothetical protein
RA	5,490,659:1	+C	6.2%	coding (124/657 nt)	PP_5714 ←	hypothetical protein
RA	5,491,490	G→A	8.2%	intergenic (‑26/+26)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,491,492	C→G	8.1%	intergenic (‑28/+24)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,491,494	T→C	8.2%	intergenic (‑30/+22)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,491,501	A→G	10.0%	intergenic (‑37/+15)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,497,004	T→A	6.1%	L26Q (CTG→CAG)	cobL →	precorrin‑6Y C(5,15)‑methyltransferase
RA	5,497,007	T→A	6.1%	L27Q (CTG→CAG)	cobL →	precorrin‑6Y C(5,15)‑methyltransferase
RA	5,523,564	G→A	8.2%	R437C (CGC→TGC)	yhjG ←	protein YhjG
RA	5,538,568	A→T	19.3%	intergenic (+58/+63)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,569	A→T	19.3%	intergenic (+59/+62)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,571	G→C	20.9%	intergenic (+61/+60)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,573	A→T	20.9%	intergenic (+63/+58)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,574	A→T	21.0%	intergenic (+64/+57)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,538,577	G→T	22.8%	intergenic (+67/+54)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,539,013	T→G	6.2%	K658T (AAG→ACG)	PP_4872 ←	hypothetical protein
RA	5,539,015	G→C	6.4%	H657Q (CAC→CAG)	PP_4872 ←	hypothetical protein
RA	5,539,020	G→C	6.2%	L656V (CTG→GTG)	PP_4872 ←	hypothetical protein
RA	5,539,748	G→A	13.9%	T413I (ACC→ATC)	PP_4872 ←	hypothetical protein
RA	5,539,750	G→C	13.3%	I412M (ATC→ATG) ‡	PP_4872 ←	hypothetical protein
RA	5,539,752	T→C	13.3%	I412V (ATC→GTC) ‡	PP_4872 ←	hypothetical protein
RA	5,539,758:1	+C	15.0%	coding (1228/2355 nt)	PP_4872 ←	hypothetical protein
RA	5,551,996	T→C	24.3%	S409P (TCA→CCA)	PP_4882 →	iron ABC transporter permease
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,565,125	C→T	8.7%	R154H (CGT→CAT)	miaA ←	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
RA	5,566,413	T→A	13.5%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,416	T→A	13.7%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,576,118	A→G	7.7%	F11L (TTC→CTC)	motA ←	flagellar motor rotation protein
RA	5,608,994	G→C	9.1%	R202G (CGC→GGC)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,997	C→G	7.6%	E201Q (GAG→CAG)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,609,000	G→C	7.0%	P200A (CCT→GCT)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,614,703	A→C	10.2%	I273M (ATT→ATG)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,706	G→T	10.0%	A272A (GCC→GCA)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,625,095	C→A	6.0%	P222P (CCG→CCT)	PP_4943 ←	glycosyl transferase
RA	5,651,374	T→G	7.1%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	6.2%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,155	T→A	5.6%	S131C (AGC→TGC)	epd ←	D‑erythrose 4‑phosphate dehydrogenase
RA	5,655,631	T→G	20.8%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	25.0%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,641	Δ1 bp	25.0%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,669,965	C→G	6.9%	L148V (CTG→GTG)	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,670,443	T→A	7.7%	intergenic (+32/‑53)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,453	G→A	11.1%	intergenic (+42/‑43)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,457	A→T	10.8%	intergenic (+46/‑39)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,458	T→A	10.9%	intergenic (+47/‑38)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,459	A→T	10.7%	intergenic (+48/‑37)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,463	T→C	10.3%	intergenic (+52/‑33)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,473	T→A	10.0%	intergenic (+62/‑23)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,705,755	A→G	5.1%	L16L (CTT→CTC)	PP_5008 ←	poly granule‑associated protein
RA	5,706,587	T→A	8.8%	L202Q (CTG→CAG)	PP_5009 →	hypothetical protein
RA	5,707,986	G→C	6.0%	Q668H (CAG→CAC)	PP_5009 →	hypothetical protein
RA	5,707,994	T→A	5.6%	F671Y (TTC→TAC)	PP_5009 →	hypothetical protein
RA	5,728,840	A→G	6.6%	intergenic (‑203/+121)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,843	A→T	6.5%	intergenic (‑206/+118)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,844	A→T	6.1%	intergenic (‑207/+117)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,847	C→T	6.8%	intergenic (‑210/+114)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,734,244	G→A	6.3%	P474S (CCG→TCG)	hutH ←	histidine ammonia‑lyase
RA	5,740,467	T→G	27.4%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,743,335	T→C	8.3%	intergenic (‑168/+79)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,349	A→G	8.4%	intergenic (‑182/+65)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,350	C→T	8.4%	intergenic (‑183/+64)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,351	A→C	8.4%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,352	G→T	8.5%	intergenic (‑185/+62)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,360	C→T	8.8%	intergenic (‑193/+54)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,362	T→C	9.3%	intergenic (‑195/+52)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,363	G→A	9.2%	intergenic (‑196/+51)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,365	A→G	8.9%	intergenic (‑198/+49)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,750,398	C→T	7.1%	V389M (GTG→ATG)	thiI ←	tRNA sulfurtransferase
RA	5,750,399	A→G	7.1%	H388H (CAT→CAC)	thiI ←	tRNA sulfurtransferase
RA	5,751,719	G→T	7.6%	intergenic (‑157/‑314)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,725	A→G	8.9%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,729	G→T	7.4%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,730	G→T	7.4%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,761,201	A→G	6.1%	T85A (ACC→GCC)	gpmI →	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase
RA	5,761,204	A→T	6.0%	K86* (AAG→TAG) ‡	gpmI →	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase
RA	5,761,205	A→T	7.0%	K86M (AAG→ATG) ‡	gpmI →	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase
RA	5,761,211	T→C	6.2%	I88T (ATC→ACC)	gpmI →	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase
RA	5,768,424	C→T	6.9%	M816I (ATG→ATA)	PP_5060 ←	hypothetical protein
RA	5,783,955	A→G	7.5%	E810E (GAA→GAG)	kefA →	intermediate mechanosensitive channel protein
RA	5,788,011	C→T	8.3%	R253H (CGC→CAC)	ynfL ←	DNA‑binding transcriptional regulator
RA	5,790,143	A→T	8.5%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,150	A→G	8.3%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,151	C→G	8.1%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,152	C→T	8.2%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,620	A→T	10.4%	intergenic (‑24/+33)	PP_5073 ← / ← hemE	hypothetical protein/uroporphyrinogen decarboxylase
RA	5,790,625	A→T	10.8%	intergenic (‑29/+28)	PP_5073 ← / ← hemE	hypothetical protein/uroporphyrinogen decarboxylase
RA	5,798,375	T→G	5.5%	A496A (GCA→GCC)	PP_5077 ←	hypothetical protein
RA	5,798,379	T→C	5.3%	D495G (GAC→GGC) ‡	PP_5077 ←	hypothetical protein
RA	5,798,380	C→A	5.5%	D495Y (GAC→TAC) ‡	PP_5077 ←	hypothetical protein
RA	5,798,964	G→T	7.3%	P300Q (CCA→CAA)	PP_5077 ←	hypothetical protein
RA	5,827,679	T→C	6.8%	W198R (TGG→CGG)	mtgA →	monofunctional biosynthetic peptidoglycan transglycosylase
RA	5,866,696	G→T	13.7%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,866,697	A→C	13.5%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,867,779	T→C	8.0%	K262R (AAG→AGG)	lgt ←	prolipoprotein diacylglyceryl transferase
RA	5,869,612	T→C	12.0%	P40P (CCT→CCC)	PP_5144 →	hypothetical protein
RA	5,869,613	G→C	8.1%	G41R (GGG→CGG) ‡	PP_5144 →	hypothetical protein
RA	5,869,614	G→A	8.5%	G41E (GGG→GAG) ‡	PP_5144 →	hypothetical protein
RA	5,869,622	G→C	6.8%	A44P (GCC→CCC)	PP_5144 →	hypothetical protein
RA	5,882,900	C→T	5.9%	M98I (ATG→ATA)	PP_5156 ←	hypothetical protein
RA	5,884,980	T→G	6.7%	A53A (GCA→GCC) ‡	PP_5159 ←	hypothetical protein
RA	5,884,981	G→C	6.7%	A53G (GCA→GGA) ‡	PP_5159 ←	hypothetical protein
RA	5,884,982	C→A	6.7%	A53S (GCA→TCA) ‡	PP_5159 ←	hypothetical protein
RA	5,902,946	G→A	8.1%	P31S (CCT→TCT)	PP_5175 ←	HlyD family secretion protein
RA	5,902,949	G→C	9.5%	L30V (CTG→GTG)	PP_5175 ←	HlyD family secretion protein
RA	5,902,952	T→C	8.6%	T29A (ACA→GCA)	PP_5175 ←	HlyD family secretion protein
RA	5,914,126	C→G	6.5%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,920,077	A→T	6.1%	E221D (GAA→GAT)	PP_5190 →	type II secretion system protein
RA	5,949,697	G→T	6.9%	K138N (AAG→AAT)	ppx →	exopolyphosphatase
RA	5,950,984	C→A	8.0%	R658L (CGT→CTT)	ppk ←	polyphosphate kinase
RA	5,950,987	T→G	7.9%	K657T (AAG→ACG)	ppk ←	polyphosphate kinase
RA	5,953,779	G→T	7.1%	A184S (GCG→TCG) ‡ R408R (CGC→CGA) ‡	PP_5218 → PP_5219 ←	DedA family protein membrane protein
RA	5,953,781	G→C	7.1%	A184A (GCG→GCC) ‡ R408G (CGC→GGC) ‡	PP_5218 → PP_5219 ←	DedA family protein membrane protein
RA	5,953,783	A→C	8.4%	E185A (GAG→GCG)  L407R (CTC→CGC)	PP_5218 → PP_5219 ←	DedA family protein membrane protein
RA	5,970,525	A→G	6.2%	W257R (TGG→CGG)	PP_5236 ←	hypothetical protein
RA	5,970,526	G→C	6.1%	R256R (CGC→CGG)	PP_5236 ←	hypothetical protein
RA	5,988,809	G→A	24.5%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	29.7%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	27.6%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	27.4%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	27.6%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	27.1%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	27.1%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	27.6%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	27.6%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	28.1%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	29.3%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	29.3%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	29.6%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	33.3%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	33.3%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	36.2%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	38.6%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,989,221	A→T	6.1%	intergenic (+515/‑31)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	6,011,489	T→G	12.5%	I114S (ATC→AGC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,493	G→C	12.2%	K115N (AAG→AAC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,496	G→C	12.2%	A116A (GCG→GCC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,500	C→A	12.8%	L118M (CTG→ATG)	rep →	single‑stranded DNA dependent ATPase
RA	6,013,836	G→A	16.2%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,838	A→G	16.2%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,845	G→C	16.2%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,846	T→G	16.3%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,847	C→T	16.2%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,852	A→G	14.8%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,853	C→A	13.1%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,854	G→C	14.3%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,861	C→T	18.9%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,863	T→C	17.5%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,016,877	A→G	7.0%	intergenic (‑193/+34)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,879	C→T	7.3%	intergenic (‑195/+32)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,880	A→G	7.4%	intergenic (‑196/+31)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,016,882	C→T	7.5%	intergenic (‑198/+29)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
RA	6,035,295	C→G	7.6%	A134G (GCG→GGG)	dut →	deoxyuridine 5'‑triphosphate nucleotidohydrolase
RA	6,040,794	T→A	9.8%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,041,127	T→A	6.6%	Q17H (CAA→CAT)	PP_5293 ←	hypothetical protein
RA	6,041,133	G→A	6.5%	I15I (ATC→ATT) ‡	PP_5293 ←	hypothetical protein
RA	6,041,135	T→A	7.5%	I15F (ATC→TTC) ‡	PP_5293 ←	hypothetical protein
RA	6,041,137	T→C	6.5%	E14G (GAA→GGA)	PP_5293 ←	hypothetical protein
RA	6,041,143	T→A	6.2%	N12I (AAT→ATT)	PP_5293 ←	hypothetical protein
RA	6,042,888	G→T	7.5%	M275I (ATG→ATT)	PP_5295 →	hypothetical protein
RA	6,048,930	G→A	8.0%	V39I (GTT→ATT) ‡	rpoZ →	DNA‑directed RNA polymerase subunit omega
RA	6,048,931	T→A	7.6%	V39D (GTT→GAT) ‡	rpoZ →	DNA‑directed RNA polymerase subunit omega
RA	6,048,932	T→C	7.8%	V39V (GTT→GTC) ‡	rpoZ →	DNA‑directed RNA polymerase subunit omega
RA	6,049,332	G→C	5.2%	S65T (AGC→ACC) ‡	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,049,333	C→T	5.3%	S65S (AGC→AGT) ‡	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,063,464	T→C	7.4%	L118P (CTG→CCG) ‡	ubiC →	chorismate pyruvate‑lyase
RA	6,063,465	G→C	7.1%	L118L (CTG→CTC) ‡	ubiC →	chorismate pyruvate‑lyase
RA	6,063,466	G→A	7.1%	G119S (GGC→AGC)	ubiC →	chorismate pyruvate‑lyase
RA	6,081,564	C→T	6.6%	E7E (GAG→GAA)	PP_5333 ←	hypothetical protein
RA	6,091,878	G→C	6.5%	P101P (CCG→CCC)	PP_5343 →	putative Transcriptional regulator
RA	6,111,977	T→A	8.3%	H118Q (CAT→CAA)	PP_5362 →	hypothetical protein
RA	6,112,819	G→A	8.9%	intergenic (‑75/‑52)	PP_5363 ← / → clsA	hypothetical protein/cardiolipin synthase
RA	6,116,243	T→A	9.9%	L151Q (CTG→CAG)	lpd →	dihydrolipoyl dehydrogenase
RA	6,116,556	C→A	5.0%	A255A (GCC→GCA)	lpd →	dihydrolipoyl dehydrogenase
RA	6,171,859	T→C	8.0%	K148R (AAG→AGG)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,171,861	A→T	8.1%	L147L (CTT→CTA) ‡	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,171,863	G→A	8.2%	L147F (CTT→TTT) ‡	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,173,516	T→A	5.6%	I375F (ATC→TTC)	glmU ←	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,519	T→C	5.6%	N374D (AAT→GAT)	glmU ←	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,535	T→A	5.2%	E368D (GAA→GAT)	glmU ←	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	1367570	1367880	311	21 [19]	[20] 21	PP_1193	membrane protein
*	*	÷	NC_002947	4169445	4169558	114	22 [20]	[20] 21	katG	catalase‑peroxidase
*	*	÷	NC_002947	5506414	5506613	200	21 [20]	[20] 21	[PP_4839]	[PP_4839]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 10913	23 (0.430)	3 (0.060)	3/254	NT	14.2%	coding (1372/1521 nt)	dnaA	chromosomal replication initiator protein
	?	NC_002947	= 10947	14 (0.270)					coding (1406/1521 nt)	dnaA	chromosomal replication initiator protein
*	?	NC_002947	64118 =	55 (1.020)	3 (0.060)	3/252	NT	5.5%	coding (598/888 nt)	PP_0055	transcriptional regulator
	?	NC_002947	64171 =	51 (0.990)					coding (545/888 nt)	PP_0055	transcriptional regulator
*	?	NC_002947	84034 =	31 (0.580)	3 (0.060)	3/250	NT	8.0%	coding (774/912 nt)	hemF	coproporphyrinogen‑III oxidase
	?	NC_002947	84074 =	40 (0.780)					coding (814/912 nt)	hemF	coproporphyrinogen‑III oxidase
*	?	NC_002947	90510 =	53 (0.980)	4 (0.080)	4/254	NT	7.0%	coding (555/618 nt)	PP_0080	hypothetical protein
	?	NC_002947	90563 =	56 (1.080)					coding (502/618 nt)	PP_0080	hypothetical protein
*	?	NC_002947	= 106235	71 (1.320)	4 (0.080)	4/246	NT	5.2%	coding (102/1518 nt)	PP_0101	sulfate transporter
	?	NC_002947	= 106261	80 (1.600)					coding (128/1518 nt)	PP_0101	sulfate transporter
*	?	NC_002947	156835 =	58 (1.080)	4 (0.080)	4/252	NT	6.9%	coding (891/1308 nt)	citN	citrate transporter
	?	NC_002947	156880 =	52 (1.010)					coding (846/1308 nt)	citN	citrate transporter
*	?	NC_002947	= 174906	NA (NA)	6 (0.120)	5/254	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 209901	NA (NA)	3 (0.060)	3/250	NT	51.4%	coding (15407/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 209956	3 (0.060)					coding (15462/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	213667 =	56 (1.040)	18 (0.340)	6/256	NT	24.4%	coding (19173/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	217038 =	57 (1.090)					coding (22544/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	222180 =	79 (1.470)	5 (0.100)	4/242	NT	7.1%	coding (35/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
	?	NC_002947	222241 =	58 (1.180)					coding (96/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
*	?	NC_002947	= 245107	53 (0.980)	4 (0.080)	4/250	NT	7.3%	coding (783/990 nt)	algP	transcriptional regulator AlgP
	?	NC_002947	= 245139	52 (1.020)					coding (815/990 nt)	algP	transcriptional regulator AlgP
*	?	NC_002947	246086 =	55 (1.020)	3 (0.060)	3/256	NT	5.9%	coding (264/1911 nt)	yheS	ABC transporter ATP‑binding protein
	?	NC_002947	246139 =	43 (0.820)					coding (317/1911 nt)	yheS	ABC transporter ATP‑binding protein
*	?	NC_002947	250227 =	47 (0.870)	6 (0.120)	5/244	NT	13.0%	coding (976/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	250271 =	37 (0.740)					coding (932/1347 nt)	nfeD	membrane bound peptidase NefD
*	?	NC_002947	= 401313	NA (NA)	6 (0.120)	6/238	NT	12.9%	coding (899/1059 nt)	PP_0334	transposase
	?	NC_002947	= 401369	45 (0.840)					coding (955/1059 nt)	PP_0334	transposase
*	?	NC_002947	= 452494	57 (1.060)	3 (0.060)	3/254	NT	5.2%	coding (412/1281 nt)	aruC	acetylornithine aminotransferase
	?	NC_002947	= 452521	55 (1.060)					coding (439/1281 nt)	aruC	acetylornithine aminotransferase
*	?	NC_002947	= 458840	55 (1.020)	4 (0.080)	4/242	NT	7.7%	intergenic (‑61/+103)	pqqC/pqqB	pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B
	?	NC_002947	= 458903	46 (0.930)					intergenic (‑124/+40)	pqqC/pqqB	pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B
*	?	NC_002947	= 464427	62 (1.150)	4 (0.080)	4/258	NT	6.4%	coding (670/1683 nt)	davB	lysine 2‑monooxygenase
	?	NC_002947	= 464467	56 (1.060)					coding (630/1683 nt)	davB	lysine 2‑monooxygenase
*	?	NC_002947	= 499202	10 (0.190)	10 (0.200)	6/246	NT	35.5%	intergenic (+46/‑250)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	= 499271	27 (0.540)					intergenic (+115/‑181)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	533510 =	NA (NA)	6 (0.120)	4/238	NT	21.7%	coding (775/1194 nt)	tufA	elongation factor Tu‑A
	?	NC_002947	= 533506	24 (0.450)					coding (771/1194 nt)	tufA	elongation factor Tu‑A
*	?	NC_002947	= 587169	54 (1.000)	4 (0.080)	3/248	NT	7.5%	coding (221/810 nt)	PP_0497	Cro/CI family transcriptional regulator
	?	NC_002947	= 587206	48 (0.950)					coding (258/810 nt)	PP_0497	Cro/CI family transcriptional regulator
*	?	NC_002947	607265 =	61 (1.130)	4 (0.080)	4/250	NT	6.2%	coding (169/618 nt)	ribA	GTP cyclohydrolase II
	?	NC_002947	607334 =	64 (1.260)					coding (238/618 nt)	ribA	GTP cyclohydrolase II
*	?	NC_002947	636596 =	55 (1.020)	4 (0.080)	4/252	NT	6.9%	coding (820/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
	?	NC_002947	636651 =	55 (1.070)					coding (875/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
*	?	NC_002947	= 654740	62 (1.150)	3 (0.060)	3/242	NT	5.2%	coding (3/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 654774	52 (1.050)					intergenic (‑32/+213)	ctpL/PP_0563	methyl‑accepting chemotaxis protein CtpL/two‑component system response regulator
*	?	NC_002947	= 680757	59 (1.100)	4 (0.080)	4/254	NT	6.5%	coding (277/780 nt)	PP_0583	AraC family transcriptional regulator
	?	NC_002947	= 680812	59 (1.140)					coding (332/780 nt)	PP_0583	AraC family transcriptional regulator
*	?	NC_002947	682009 =	46 (0.850)	4 (0.080)	4/256	NT	8.5%	coding (1264/1944 nt)	PP_0584	methyl‑accepting chemotaxis transducer
	?	NC_002947	682041 =	42 (0.800)					coding (1232/1944 nt)	PP_0584	methyl‑accepting chemotaxis transducer
*	?	NC_002947	721227 =	50 (0.930)	3 (0.060)	3/244	NT	5.8%	intergenic (‑32/+75)	PP_0614/PP_0615	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase/ABC transporter ATP‑binding protein
	?	NC_002947	721286 =	52 (1.050)					intergenic (‑91/+16)	PP_0614/PP_0615	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase/ABC transporter ATP‑binding protein
*	?	NC_002947	= 746139	NA (NA)	3 (0.060)	3/250	NT	NA	coding (360/1533 nt)	PP_0637	transposase
	?	NC_002947	= 746220	NA (NA)					coding (279/1533 nt)	PP_0637	transposase
*	?	NC_002947	= 774001	48 (0.890)	4 (0.080)	4/252	NT	7.9%	coding (608/1419 nt)	PP_0665	glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	= 774029	48 (0.930)					coding (636/1419 nt)	PP_0665	glyceraldehyde‑3‑phosphate dehydrogenase
*	?	NC_002947	776969 =	72 (1.340)	4 (0.080)	3/254	NT	5.3%	coding (19/2433 nt)	PP_0669	ferric siderophore receptor
	?	NC_002947	777043 =	75 (1.450)					coding (93/2433 nt)	PP_0669	ferric siderophore receptor
*	?	NC_002947	= 822546	49 (0.910)	4 (0.080)	4/250	NT	8.0%	coding (1917/2412 nt)	PP_0707	hypothetical protein
	?	NC_002947	= 822572	45 (0.880)					coding (1943/2412 nt)	PP_0707	hypothetical protein
*	?	NC_002947	= 863665	57 (1.060)	4 (0.080)	4/252	NT	6.1%	coding (799/1017 nt)	hemH	ferrochelatase
	?	NC_002947	= 863693	68 (1.320)					coding (827/1017 nt)	hemH	ferrochelatase
*	?	NC_002947	867935 =	30 (0.560)	4 (0.080)	4/234	NT	15.8%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867995 =	16 (0.340)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	887383 =	46 (0.850)	5 (0.100)	5/254	NT	9.6%	coding (417/1608 nt)	PP_0768	TPR domain‑containing response regulator
	?	NC_002947	887429 =	50 (0.970)					coding (463/1608 nt)	PP_0768	TPR domain‑containing response regulator
*	?	NC_002947	942570 =	33 (0.610)	3 (0.060)	3/252	NT	11.2%	coding (3052/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	943829 =	16 (0.310)					coding (1793/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 981803	56 (1.040)	3 (0.060)	3/250	NT	5.4%	coding (680/1863 nt)	hscA	DnaK‑like molecular chaperone
	?	NC_002947	= 981841	53 (1.040)					coding (718/1863 nt)	hscA	DnaK‑like molecular chaperone
*	?	NC_002947	= 989423	54 (1.000)	4 (0.080)	4/250	NT	6.9%	coding (1275/1290 nt)	hisS	histidine‑‑tRNA ligase
	?	NC_002947	= 989438	57 (1.120)					coding (1290/1290 nt)	hisS	histidine‑‑tRNA ligase
*	?	NC_002947	= 991688	39 (0.720)	6 (0.120)	6/248	NT	13.4%	coding (310/1464 nt)	der	GTPase Der
	?	NC_002947	= 991712	41 (0.810)					coding (334/1464 nt)	der	GTPase Der
*	?	NC_002947	1012724 =	48 (0.890)	4 (0.080)	4/252	NT	8.2%	coding (1136/1584 nt)	prfC	peptide chain release factor 3
	?	NC_002947	1012761 =	44 (0.860)					coding (1173/1584 nt)	prfC	peptide chain release factor 3
*	?	NC_002947	1019788 =	60 (1.110)	4 (0.080)	4/252	NT	6.9%	coding (241/969 nt)	dppD	dipeptide ABC transporter ATP‑binding protein
	?	NC_002947	1019822 =	51 (0.990)					coding (207/969 nt)	dppD	dipeptide ABC transporter ATP‑binding protein
*	?	NC_002947	1025969 =	51 (0.950)	3 (0.060)	3/256	NT	5.4%	coding (999/1593 nt)	dppA‑II	dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1026009 =	55 (1.050)					coding (959/1593 nt)	dppA‑II	dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1095604 =	58 (1.080)	4 (0.080)	4/250	NT	6.7%	coding (457/1494 nt)	rpoN	RNA polymerase sigma‑54 factor
	?	NC_002947	1095665 =	56 (1.100)					coding (396/1494 nt)	rpoN	RNA polymerase sigma‑54 factor
*	?	NC_002947	= 1109505	44 (0.820)	4 (0.080)	4/256	NT	7.9%	coding (171/651 nt)	PP_0969	GntR family transcriptional regulator
	?	NC_002947	= 1109543	50 (0.960)					coding (209/651 nt)	PP_0969	GntR family transcriptional regulator
*	?	NC_002947	= 1151765	50 (0.930)	3 (0.060)	3/254	NT	5.6%	coding (490/1827 nt)	edd	phosphogluconate dehydratase
	?	NC_002947	= 1151792	53 (1.020)					coding (517/1827 nt)	edd	phosphogluconate dehydratase
*	?	NC_002947	1153216 =	63 (1.170)	4 (0.080)	4/250	NT	5.9%	coding (118/960 nt)	glk	glucokinase
	?	NC_002947	1153267 =	69 (1.350)					coding (169/960 nt)	glk	glucokinase
*	?	NC_002947	= 1181861	52 (0.970)	4 (0.080)	4/258	NT	6.5%	coding (914/1407 nt)	cumA	multicopper oxidase
	?	NC_002947	= 1181921	64 (1.220)					coding (974/1407 nt)	cumA	multicopper oxidase
*	?	NC_002947	1192239 =	51 (0.950)	3 (0.060)	3/248	NT	5.9%	coding (1411/2076 nt)	upxB	phosphatase
	?	NC_002947	1192310 =	48 (0.950)					coding (1340/2076 nt)	upxB	phosphatase
*	?	NC_002947	= 1312979	45 (0.840)	6 (0.120)	5/250	NT	11.6%	coding (1678/2847 nt)	rapA	RNA polymerase‑associated protein RapA
	?	NC_002947	= 1313030	49 (0.960)					coding (1627/2847 nt)	rapA	RNA polymerase‑associated protein RapA
*	?	NC_002947	= 1316945	39 (0.720)	4 (0.080)	4/248	NT	9.1%	coding (363/1989 nt)	PP_1150	membrane protein
	?	NC_002947	= 1316968	43 (0.850)					coding (386/1989 nt)	PP_1150	membrane protein
*	?	NC_002947	1366339 =	53 (0.980)	5 (0.100)	3/254	NT	9.1%	coding (361/711 nt)	PP_1191	S4 domain‑containing protein
	?	NC_002947	1366381 =	49 (0.950)					coding (319/711 nt)	PP_1191	S4 domain‑containing protein
*	?	NC_002947	= 1374458	28 (0.520)	3 (0.060)	3/250	NT	9.8%	coding (78/1911 nt)	kup	potassium transport system protein Kup
	?	NC_002947	= 1374490	29 (0.570)					coding (110/1911 nt)	kup	potassium transport system protein Kup
*	?	NC_002947	1380487 =	44 (0.820)	5 (0.100)	4/240	NT	12.7%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380526 =	29 (0.590)					intergenic (‑252/+10)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
*	?	NC_002947	= 1388660	43 (0.800)	3 (0.060)	3/254	NT	6.5%	intergenic (‑171/‑111)	PP_1209/dps	cold‑shock protein/DNA‑binding stress protein
	?	NC_002947	= 1388703	45 (0.870)					intergenic (‑214/‑68)	PP_1209/dps	cold‑shock protein/DNA‑binding stress protein
*	?	NC_002947	= 1404387	60 (1.110)	4 (0.080)	4/258	NT	6.6%	coding (1295/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 1404422	54 (1.030)					coding (1260/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
*	?	NC_002947	1410949 =	46 (0.850)	3 (0.060)	3/248	NT	6.5%	coding (986/1437 nt)	PP_1232	hypothetical protein
	?	NC_002947	1411020 =	43 (0.850)					coding (915/1437 nt)	PP_1232	hypothetical protein
*	?	NC_002947	= 1411164	54 (1.000)	3 (0.060)	3/254	NT	5.9%	coding (771/1437 nt)	PP_1232	hypothetical protein
	?	NC_002947	= 1411189	44 (0.850)					coding (746/1437 nt)	PP_1232	hypothetical protein
*	?	NC_002947	= 1413680	59 (1.100)	4 (0.080)	4/258	NT	6.3%	coding (217/474 nt)	PP_1235	AhpC/TSA family protein
	?	NC_002947	= 1413722	61 (1.160)					coding (175/474 nt)	PP_1235	AhpC/TSA family protein
*	?	NC_002947	= 1419549	7 (0.130)	19 (0.360)	15/258	NT	58.6%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	20 (0.380)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1426981	NA (NA)	7 (0.140)	6/252	NT	NA	coding (879/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1427010	NA (NA)					coding (908/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 1445144	52 (0.970)	3 (0.060)	3/254	NT	5.5%	coding (768/1530 nt)	PP_1263	fusaric acid resistance protein
	?	NC_002947	= 1445188	54 (1.040)					coding (812/1530 nt)	PP_1263	fusaric acid resistance protein
*	?	NC_002947	= 1451149	45 (0.840)	4 (0.080)	4/250	NT	8.0%	coding (333/906 nt)	PP_1270	LysR family transcriptional regulator
	?	NC_002947	= 1451175	50 (0.980)					coding (359/906 nt)	PP_1270	LysR family transcriptional regulator
*	?	NC_002947	= 1456018	27 (0.500)	3 (0.060)	3/236	NT	8.1%	intergenic (+97/+152)	PP_1273/PP_1274	multidrug MFS transporter outer membrane protein/short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 1456062	44 (0.910)					intergenic (+141/+108)	PP_1273/PP_1274	multidrug MFS transporter outer membrane protein/short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	1486101 =	57 (1.060)	3 (0.060)	3/256	NT	5.2%	coding (990/1098 nt)	yhdY	amino acid ABC transporter permease
	?	NC_002947	1486132 =	54 (1.030)					coding (1021/1098 nt)	yhdY	amino acid ABC transporter permease
*	?	NC_002947	1487006 =	17 (0.320)	3 (0.070)	3/204	NT	29.8%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487096 =	1 (0.020)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1513574	39 (0.720)	3 (0.060)	3/248	NT	6.2%	coding (213/474 nt)	mraZ	cell division/cell wall cluster transcriptional repressor MraZ
	?	NC_002947	= 1513636	54 (1.070)					coding (275/474 nt)	mraZ	cell division/cell wall cluster transcriptional repressor MraZ
*	?	NC_002947	= 1543781	51 (0.950)	4 (0.080)	4/252	NT	7.4%	coding (585/1245 nt)	mdfA	multidrug MFS transporter
	?	NC_002947	= 1543810	51 (0.990)					coding (614/1245 nt)	mdfA	multidrug MFS transporter
*	?	NC_002947	= 1558475	59 (1.100)	4 (0.080)	3/248	NT	6.6%	coding (426/732 nt)	PP_1369	hypothetical protein
	?	NC_002947	= 1558529	57 (1.130)					coding (372/732 nt)	PP_1369	hypothetical protein
*	?	NC_002947	= 1572471	44 (0.820)	4 (0.080)	4/246	NT	8.3%	coding (593/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
	?	NC_002947	= 1572538	47 (0.940)					coding (660/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
*	?	NC_002947	= 1607270	40 (0.740)	3 (0.060)	3/250	NT	8.2%	coding (264/888 nt)	PP_1408	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase
	?	NC_002947	= 1607299	29 (0.570)					coding (235/888 nt)	PP_1408	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase
*	?	NC_002947	1612788 =	49 (0.910)	3 (0.060)	3/254	NT	5.8%	coding (585/693 nt)	ung	uracil‑DNA glycosylase
	?	NC_002947	1612843 =	51 (0.980)					coding (640/693 nt)	ung	uracil‑DNA glycosylase
*	?	NC_002947	1671421 =	51 (0.950)	4 (0.080)	4/248	NT	8.7%	coding (1468/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	1671465 =	36 (0.710)					coding (1424/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter
*	?	NC_002947	= 1682236	58 (1.080)	4 (0.080)	3/250	NT	6.5%	coding (755/1710 nt)	recJ	ssDNA‑specific exonuclease RecJ
	?	NC_002947	= 1682287	61 (1.200)					coding (806/1710 nt)	recJ	ssDNA‑specific exonuclease RecJ
*	?	NC_002947	1720173 =	53 (0.980)	5 (0.100)	5/250	NT	9.2%	intergenic (‑163/‑88)	PP_1515/PP_1516	Transcriptional regulator, tetR family/RND membrane fusion protein
	?	NC_002947	1720205 =	49 (0.960)					intergenic (‑195/‑56)	PP_1515/PP_1516	Transcriptional regulator, tetR family/RND membrane fusion protein
*	?	NC_002947	1731163 =	9 (0.170)	5 (0.120)	5/208	NT	30.2%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	16 (0.380)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1733564	45 (0.840)	5 (0.100)	4/256	NT	9.0%	coding (306/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1733596	58 (1.110)					coding (274/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	1748689 =	69 (1.280)	4 (0.080)	3/252	NT	5.6%	intergenic (‑22/‑310)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
	?	NC_002947	1748732 =	70 (1.360)					intergenic (‑65/‑267)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1775743	33 (0.610)	3 (0.060)	3/248	NT	8.7%	coding (923/1077 nt)	PP_1582	hypothetical protein
	?	NC_002947	= 1775769	32 (0.630)					coding (949/1077 nt)	PP_1582	hypothetical protein
*	?	NC_002947	1782480 =	33 (0.610)	3 (0.060)	3/254	NT	8.0%	coding (1597/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	1782517 =	37 (0.710)					coding (1560/2703 nt)	glnD	uridylyltransferase
*	?	NC_002947	= 1790378	46 (0.850)	4 (0.080)	4/254	NT	7.3%	coding (308/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
	?	NC_002947	= 1790436	57 (1.100)					coding (366/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
*	?	NC_002947	= 1811373	45 (0.840)	4 (0.080)	4/252	NT	8.6%	coding (688/708 nt)	ispD	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase
	?	NC_002947	= 1811405	42 (0.820)					intergenic (+12/+116)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
*	?	NC_002947	= 1821235	NA (NA)	12 (0.220)	5/264	NT	NA	coding (998/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070688	NA (NA)					coding (1062/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	= 1855443	50 (0.930)	3 (0.060)	3/240	NT	5.3%	coding (455/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855472	62 (1.270)					coding (484/1341 nt)	PP_1659	hypothetical protein
*	?	NC_002947	= 1874168	64 (1.190)	4 (0.080)	3/252	NT	6.7%	coding (479/1056 nt)	cobU	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
	?	NC_002947	= 1874212	51 (0.990)					coding (523/1056 nt)	cobU	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
*	?	NC_002947	= 1942887	32 (0.590)	3 (0.060)	3/254	NT	8.7%	coding (53/1665 nt)	actP‑I	acetate permease
	?	NC_002947	= 1942920	32 (0.620)					coding (86/1665 nt)	actP‑I	acetate permease
*	?	NC_002947	= 1948721	44 (0.820)	4 (0.080)	4/256	NT	7.6%	coding (934/1746 nt)	PP_1749	acetyltransferase
	?	NC_002947	= 1948789	54 (1.030)					coding (866/1746 nt)	PP_1749	acetyltransferase
*	?	NC_002947	= 1952705	47 (0.870)	3 (0.060)	3/256	NT	5.4%	coding (836/1965 nt)	mnmC	methyltransferase/FAD‑dependent oxidoreductase
	?	NC_002947	= 1952730	59 (1.130)					coding (811/1965 nt)	mnmC	methyltransferase/FAD‑dependent oxidoreductase
*	?	NC_002947	2024610 =	38 (0.710)	3 (0.060)	3/250	NT	7.4%	coding (749/1143 nt)	wbpY	glycosyl transferase WbpY
	?	NC_002947	2024709 =	39 (0.770)					coding (848/1143 nt)	wbpY	glycosyl transferase WbpY
*	?	NC_002947	2055590 =	36 (0.670)	3 (0.060)	3/256	NT	7.8%	coding (731/1092 nt)	aroC	chorismate synthase
	?	NC_002947	2055630 =	36 (0.690)					coding (771/1092 nt)	aroC	chorismate synthase
*	?	NC_002947	= 2057823	20 (0.370)	6 (0.140)	6/216	NT	24.8%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2057863	20 (0.450)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	= 2059591	41 (0.760)	3 (0.060)	3/246	NT	6.7%	intergenic (+25/+99)	PP_1835/PP_1836	hypothetical protein/ZIP family metal transporter
	?	NC_002947	= 2059654	45 (0.900)					intergenic (+88/+36)	PP_1835/PP_1836	hypothetical protein/ZIP family metal transporter
*	?	NC_002947	2085512 =	32 (0.590)	8 (0.160)	4/248	NT	20.5%	intergenic (+221/‑374)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	2256179 =	32 (0.630)					intergenic (+239/‑465)	asd/PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
*	?	NC_002947	= 2086250	NA (NA)	7 (0.140)	6/248	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	2129966 =	68 (1.260)	4 (0.080)	4/248	NT	6.0%	coding (2233/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130009 =	62 (1.230)					coding (2190/2496 nt)	fimD	type I pili subunit FimD
*	?	NC_002947	2143357 =	57 (1.060)	4 (0.080)	4/252	NT	6.9%	coding (137/435 nt)	PP_1899	ExbD/TolR family protein
	?	NC_002947	2143402 =	53 (1.030)					coding (182/435 nt)	PP_1899	ExbD/TolR family protein
*	?	NC_002947	2234265 =	60 (1.110)	3 (0.060)	3/254	NT	5.1%	coding (341/1197 nt)	tyrB	aromatic amino acid aminotransferase
	?	NC_002947	2234353 =	55 (1.060)					coding (253/1197 nt)	tyrB	aromatic amino acid aminotransferase
*	?	NC_002947	= 2299834	49 (0.910)	3 (0.060)	3/254	NT	6.2%	coding (288/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	= 2299877	44 (0.850)					coding (245/3645 nt)	sbcC	exonuclease subunit SbcC
*	?	NC_002947	2301453 =	0 (0.000)	40 (0.760)	32/258	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	49 (0.920)	40/260	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	2333832 =	73 (1.360)	4 (0.080)	3/256	NT	5.8%	coding (764/1185 nt)	fadA	3‑ketoacyl‑CoA thiolase
	?	NC_002947	2333892 =	60 (1.150)					coding (824/1185 nt)	fadA	3‑ketoacyl‑CoA thiolase
*	?	NC_002947	2343629 =	44 (0.820)	3 (0.060)	3/256	NT	6.5%	coding (75/249 nt)	PP_2059	hypothetical protein
	?	NC_002947	2343671 =	43 (0.820)					coding (33/249 nt)	PP_2059	hypothetical protein
*	?	NC_002947	= 2358022	50 (0.930)	4 (0.080)	3/254	NT	8.2%	coding (289/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	= 2358062	41 (0.790)					coding (249/825 nt)	PP_2072	AraC family transcriptional regulator
*	?	NC_002947	= 2360516	37 (0.690)	3 (0.060)	3/256	NT	7.2%	coding (641/1134 nt)	PP_2075	membrane protein
	?	NC_002947	= 2360555	42 (0.800)					coding (602/1134 nt)	PP_2075	membrane protein
*	?	NC_002947	= 2382486	42 (0.780)	4 (0.080)	4/250	NT	8.6%	coding (1411/1671 nt)	PP_2091	serine/threonine‑protein kinase
	?	NC_002947	= 2382538	45 (0.880)					coding (1359/1671 nt)	PP_2091	serine/threonine‑protein kinase
*	?	NC_002947	2403799 =	58 (1.080)	5 (0.100)	4/244	NT	8.1%	coding (426/1209 nt)	PP_2106	ammonium transporter
	?	NC_002947	2403860 =	60 (1.210)					coding (487/1209 nt)	PP_2106	ammonium transporter
*	?	NC_002947	= 2409403	62 (1.150)	4 (0.080)	3/246	NT	6.4%	coding (2045/2742 nt)	acnA‑I	aconitate hydratase
	?	NC_002947	= 2409462	59 (1.180)					coding (1986/2742 nt)	acnA‑I	aconitate hydratase
*	?	NC_002947	= 2436620	49 (0.910)	3 (0.060)	3/244	NT	6.2%	intergenic (+198/‑461)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	= 2436655	45 (0.900)					intergenic (+233/‑426)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
*	?	NC_002947	2447783 =	49 (0.910)	3 (0.060)	3/242	NT	6.1%	coding (3300/3318 nt)	PP_2146	SNF2/RAD54 family helicase
	?	NC_002947	2447837 =	47 (0.950)					coding (3246/3318 nt)	PP_2146	SNF2/RAD54 family helicase
*	?	NC_002947	= 2472140	12 (0.220)	7 (0.180)	6/186	NT	38.4%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 2472186	14 (0.370)					intergenic (+90/+59)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	= 2473284	58 (1.080)	3 (0.060)	3/254	NT	5.1%	coding (812/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	= 2473329	57 (1.100)					coding (767/1851 nt)	PP_2167	PhoD‑like phosphatase
*	?	NC_002947	2491753 =	39 (0.720)	4 (0.080)	4/250	NT	8.9%	coding (1176/2883 nt)	PP_2185	formate dehydrogenase subunit alpha
	?	NC_002947	2491796 =	45 (0.880)					coding (1219/2883 nt)	PP_2185	formate dehydrogenase subunit alpha
*	?	NC_002947	2547980 =	39 (0.720)	4 (0.080)	3/250	NT	10.4%	coding (222/888 nt)	rhtA	threonine/homoserine exporter
	?	NC_002947	2548026 =	32 (0.630)					coding (176/888 nt)	rhtA	threonine/homoserine exporter
*	?	NC_002947	2575626 =	53 (0.980)	5 (0.100)	5/252	NT	9.2%	coding (803/1689 nt)	PP_2258	sensory box protein
	?	NC_002947	2575674 =	48 (0.930)					coding (851/1689 nt)	PP_2258	sensory box protein
*	?	NC_002947	2646981 =	46 (0.850)	3 (0.060)	3/246	NT	6.8%	coding (333/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	2647029 =	39 (0.780)					coding (285/2499 nt)	PP_2316	ABC transporter permease
*	?	NC_002947	= 2665378	60 (1.110)	4 (0.080)	4/250	NT	6.5%	coding (1241/2589 nt)	acnA‑II	aconitate hydratase
	?	NC_002947	= 2665398	59 (1.160)					coding (1261/2589 nt)	acnA‑II	aconitate hydratase
*	?	NC_002947	2684111 =	33 (0.610)	3 (0.060)	3/254	NT	7.3%	coding (454/1128 nt)	PP_2352	hypothetical protein
	?	NC_002947	2684194 =	44 (0.850)					coding (371/1128 nt)	PP_2352	hypothetical protein
*	?	NC_002947	= 2686506	54 (1.000)	4 (0.080)	4/256	NT	6.6%	coding (1216/2388 nt)	PP_2354	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 2686544	60 (1.150)					coding (1178/2388 nt)	PP_2354	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 2707502	49 (0.910)	3 (0.060)	3/250	NT	5.6%	coding (71/495 nt)	PP_2370	hypothetical protein
	?	NC_002947	= 2707537	55 (1.080)					coding (36/495 nt)	PP_2370	hypothetical protein
*	?	NC_002947	2746917 =	60 (1.110)	3 (0.060)	3/254	NT	5.4%	coding (852/1287 nt)	PP_2402	sensor histidine kinase
	?	NC_002947	2746963 =	47 (0.910)					coding (806/1287 nt)	PP_2402	sensor histidine kinase
*	?	NC_002947	2762390 =	79 (1.470)	5 (0.100)	5/246	NT	7.7%	coding (505/789 nt)	PP_2416	iron ABC transporter ATP‑binding protein
	?	NC_002947	2762482 =	47 (0.940)					coding (413/789 nt)	PP_2416	iron ABC transporter ATP‑binding protein
*	?	NC_002947	2781785 =	46 (0.850)	3 (0.060)	3/248	NT	6.0%	coding (581/1218 nt)	iscS‑II	cysteine desulfurase
	?	NC_002947	2781834 =	51 (1.010)					coding (532/1218 nt)	iscS‑II	cysteine desulfurase
*	?	NC_002947	= 2785510	46 (0.850)	5 (0.100)	5/246	NT	10.4%	coding (304/390 nt)	PP_5523	hypothetical protein
	?	NC_002947	= 2785556	43 (0.860)					coding (350/390 nt)	PP_5523	hypothetical protein
*	?	NC_002947	2816560 =	42 (0.780)	5 (0.100)	4/256	NT	10.6%	coding (28/357 nt)	PP_2472	MerR family transcriptional regulator
	?	NC_002947	2816653 =	44 (0.840)					coding (121/357 nt)	PP_2472	MerR family transcriptional regulator
*	?	NC_002947	2827444 =	57 (1.060)	4 (0.080)	4/256	NT	6.8%	coding (857/1224 nt)	PP_2479	cytochrome c family protein
	?	NC_002947	2827489 =	55 (1.050)					coding (902/1224 nt)	PP_2479	cytochrome c family protein
*	?	NC_002947	2828149 =	36 (0.670)	3 (0.060)	3/258	NT	7.8%	coding (325/1209 nt)	PP_2480	xanthine dehydrogenase accessory factor
	?	NC_002947	2828206 =	36 (0.680)					coding (382/1209 nt)	PP_2480	xanthine dehydrogenase accessory factor
*	?	NC_002947	2871432 =	47 (0.870)	4 (0.080)	3/250	NT	8.1%	coding (210/657 nt)	PP_2524	HD domain‑containing protein
	?	NC_002947	2871471 =	46 (0.900)					coding (249/657 nt)	PP_2524	HD domain‑containing protein
*	?	NC_002947	2872062 =	53 (0.980)	3 (0.060)	3/256	NT	5.5%	coding (1013/1164 nt)	PP_2525	hypothetical protein
	?	NC_002947	2872099 =	51 (0.980)					coding (976/1164 nt)	PP_2525	hypothetical protein
*	?	NC_002947	2878744 =	66 (1.230)	6 (0.120)	6/250	NT	9.7%	coding (262/996 nt)	PP_2533	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	2878785 =	49 (0.960)					coding (221/996 nt)	PP_2533	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	= 2884263	36 (0.670)	3 (0.060)	3/250	NT	7.1%	coding (823/927 nt)	PP_2539	LysR family transcriptional regulator
	?	NC_002947	= 2884322	45 (0.880)					coding (882/927 nt)	PP_2539	LysR family transcriptional regulator
*	?	NC_002947	= 2916742	49 (0.910)	4 (0.080)	4/256	NT	7.8%	coding (5762/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	= 2916797	47 (0.900)					coding (5817/10827 nt)	PP_2561	hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	= 2937821	0 (0.000)	5 (0.100)	5/250	NT	100%	coding (1234/1329 nt)	PP_2570	transposase
	?	NC_002947	= 3826709	NA (NA)					coding (1268/1329 nt)	PP_3381	transposase
*	?	NC_002947	= 2956792	39 (0.720)	3 (0.060)	3/248	NT	6.7%	coding (1130/1383 nt)	PP_2588	class III aminotransferase
	?	NC_002947	= 2956869	47 (0.930)					coding (1207/1383 nt)	PP_2588	class III aminotransferase
*	?	NC_002947	2973290 =	54 (1.000)	4 (0.080)	4/250	NT	7.2%	coding (584/1713 nt)	PP_2600	hypothetical protein
	?	NC_002947	2973324 =	52 (1.020)					coding (550/1713 nt)	PP_2600	hypothetical protein
*	?	NC_002947	2988836 =	31 (0.580)	6 (0.110)	6/256	NT	14.4%	coding (506/951 nt)	PP_2613	hypothetical protein
	?	NC_002947	2988881 =	41 (0.790)					coding (461/951 nt)	PP_2613	hypothetical protein
*	?	NC_002947	2988909 =	49 (0.910)	5 (0.100)	3/254	NT	8.8%	coding (433/951 nt)	PP_2613	hypothetical protein
	?	NC_002947	2988975 =	56 (1.080)					coding (367/951 nt)	PP_2613	hypothetical protein
*	?	NC_002947	= 2991498	50 (0.930)	5 (0.100)	3/252	NT	9.6%	intergenic (‑19/+56)	vgrG‑I/hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
	?	NC_002947	= 2991558	46 (0.900)					coding (512/516 nt)	hcpC‑I	hemolysin‑coregulated protein
*	?	NC_002947	= 3005550	35 (0.650)	4 (0.080)	3/248	NT	9.9%	coding (2131/3621 nt)	PP_2627	membrane protein
	?	NC_002947	= 3005581	40 (0.790)					coding (2162/3621 nt)	PP_2627	membrane protein
*	?	NC_002947	3051334 =	41 (0.760)	6 (0.120)	6/252	NT	13.9%	coding (34/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3051361 =	35 (0.680)					coding (61/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	3059850 =	45 (0.840)	6 (0.120)	6/248	NT	12.7%	coding (1129/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	3059920 =	40 (0.790)					coding (1199/1275 nt)	PP_2671	sensor histidine kinase
*	?	NC_002947	= 3072608	53 (0.980)	6 (0.120)	6/250	NT	10.7%	coding (314/1671 nt)	PP_2683	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3072637	50 (0.980)					coding (343/1671 nt)	PP_2683	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 3092867	59 (1.100)	3 (0.060)	3/250	NT	5.0%	coding (828/939 nt)	PP_2701	LysR family transcriptional regulator
	?	NC_002947	= 3092935	58 (1.140)					coding (896/939 nt)	PP_2701	LysR family transcriptional regulator
*	?	NC_002947	3120002 =	52 (0.970)	4 (0.080)	4/252	NT	7.9%	coding (683/1248 nt)	PP_2736	hypothetical protein
	?	NC_002947	3120062 =	43 (0.840)					coding (623/1248 nt)	PP_2736	hypothetical protein
*	?	NC_002947	3146850 =	54 (1.000)	4 (0.080)	4/252	NT	7.3%	coding (1019/1239 nt)	sfnA	acyl‑CoA dehydrogenase/oxidase family protein
	?	NC_002947	3146888 =	50 (0.970)					coding (981/1239 nt)	sfnA	acyl‑CoA dehydrogenase/oxidase family protein
*	?	NC_002947	3184148 =	51 (0.950)	4 (0.080)	4/256	NT	8.4%	coding (636/768 nt)	PP_2794	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3184245 =	38 (0.730)					coding (733/768 nt)	PP_2794	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	3186375 =	46 (0.850)	3 (0.060)	3/248	NT	5.9%	coding (311/324 nt)	PP_2796	hypothetical protein
	?	NC_002947	3186414 =	53 (1.050)					coding (30/1659 nt)	actP‑II	acetate permease
*	?	NC_002947	3192896 =	39 (0.720)	3 (0.060)	3/252	NT	8.0%	coding (565/1425 nt)	prr	gamma‑aminobutyraldehyde dehydrogenase
	?	NC_002947	3192940 =	32 (0.620)					coding (521/1425 nt)	prr	gamma‑aminobutyraldehyde dehydrogenase
*	?	NC_002947	3222162 =	54 (1.000)	3 (0.060)	3/254	NT	5.5%	coding (532/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	3222195 =	52 (1.000)					coding (499/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
*	?	NC_002947	3230543 =	47 (0.870)	4 (0.080)	4/256	NT	8.1%	coding (840/1353 nt)	PP_2830	MFS transporter
	?	NC_002947	3230606 =	45 (0.860)					coding (777/1353 nt)	PP_2830	MFS transporter
*	?	NC_002947	3243408 =	47 (0.870)	4 (0.080)	3/254	NT	8.7%	coding (1485/2289 nt)	PP_2839	hypothetical protein
	?	NC_002947	3243481 =	39 (0.750)					coding (1558/2289 nt)	PP_2839	hypothetical protein
*	?	NC_002947	3248244 =	40 (0.740)	3 (0.060)	3/252	NT	6.7%	coding (178/318 nt)	ureB	urease subunit beta
	?	NC_002947	3248295 =	46 (0.900)					coding (229/318 nt)	ureB	urease subunit beta
*	?	NC_002947	3249435 =	59 (1.100)	4 (0.080)	4/254	NT	7.1%	coding (1055/1704 nt)	ureC	urease subunit alpha
	?	NC_002947	3249516 =	48 (0.930)					coding (1136/1704 nt)	ureC	urease subunit alpha
*	?	NC_002947	3296377 =	52 (0.970)	3 (0.060)	3/244	NT	6.1%	intergenic (‑246/+6)	PP_2896/PP_2898	hypothetical protein/hypothetical protein
	?	NC_002947	3296441 =	44 (0.880)					coding (434/492 nt)	PP_2898	hypothetical protein
*	?	NC_002947	= 3399814	49 (0.910)	3 (0.060)	3/252	NT	6.3%	coding (220/702 nt)	PP_3005	hypothetical protein
	?	NC_002947	= 3399856	42 (0.820)					coding (178/702 nt)	PP_3005	hypothetical protein
*	?	NC_002947	3443566 =	9 (0.170)	3 (0.060)	3/252	NT	17.3%	coding (2325/3270 nt)	PP_3062	tail length determination protein
	?	NC_002947	3443605 =	20 (0.390)					coding (2364/3270 nt)	PP_3062	tail length determination protein
*	?	NC_002947	3461173 =	44 (0.820)	4 (0.080)	3/244	NT	10.4%	coding (202/1017 nt)	PP_3076	ABC transporter permease
	?	NC_002947	3461271 =	28 (0.560)					coding (104/1017 nt)	PP_3076	ABC transporter permease
*	?	NC_002947	= 3464991	60 (1.110)	3 (0.060)	3/256	NT	5.5%	coding (804/1062 nt)	aroF‑II	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	NC_002947	= 3465038	44 (0.840)					coding (757/1062 nt)	aroF‑II	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
*	?	NC_002947	3547416 =	47 (0.870)	4 (0.080)	3/252	NT	8.7%	coding (361/1377 nt)	PP_3132	polysaccharide transporter
	?	NC_002947	3547489 =	39 (0.760)					coding (434/1377 nt)	PP_3132	polysaccharide transporter
*	?	NC_002947	= 3555324	40 (0.740)	3 (0.060)	3/250	NT	7.2%	coding (940/1203 nt)	PP_3139	group 1 family glycosyl transferase
	?	NC_002947	= 3555357	39 (0.770)					coding (973/1203 nt)	PP_3139	group 1 family glycosyl transferase
*	?	NC_002947	3586021 =	43 (0.800)	3 (0.060)	3/252	NT	7.1%	coding (215/1329 nt)	benK	benzoate MFS transporter
	?	NC_002947	3586062 =	38 (0.740)					coding (256/1329 nt)	benK	benzoate MFS transporter
*	?	NC_002947	= 3592423	45 (0.840)	3 (0.060)	3/254	NT	6.2%	coding (471/912 nt)	PP_3170	LysR family transcriptional regulator
	?	NC_002947	= 3592441	47 (0.910)					coding (489/912 nt)	PP_3170	LysR family transcriptional regulator
*	?	NC_002947	3613444 =	47 (0.870)	4 (0.080)	4/256	NT	7.1%	coding (240/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613484 =	59 (1.130)					coding (200/3396 nt)	mcoA	Mn(II) copper oxidase A
*	?	NC_002947	3625930 =	39 (0.720)	3 (0.060)	3/254	NT	7.3%	coding (573/939 nt)	PP_3196	nodulation protein d1
	?	NC_002947	3625996 =	39 (0.750)					coding (507/939 nt)	PP_3196	nodulation protein d1
*	?	NC_002947	= 3643273	46 (0.850)	3 (0.060)	3/250	NT	6.4%	coding (774/804 nt)	PP_3210	ABC transporter permease
	?	NC_002947	= 3643310	44 (0.860)					coding (737/804 nt)	PP_3210	ABC transporter permease
*	?	NC_002947	3644478 =	56 (1.040)	4 (0.080)	4/252	NT	7.4%	coding (428/849 nt)	PP_3211	ABC transporter ATP‑binding protein
	?	NC_002947	3644536 =	47 (0.910)					coding (370/849 nt)	PP_3211	ABC transporter ATP‑binding protein
*	?	NC_002947	= 3680851	53 (0.980)	8 (0.150)	8/256	NT	14.6%	coding (801/894 nt)	PP_3247	bile acid/Na+ symporter family transporter
	?	NC_002947	= 3680886	42 (0.800)					coding (766/894 nt)	PP_3247	bile acid/Na+ symporter family transporter
*	?	NC_002947	3704667 =	54 (1.000)	4 (0.080)	4/246	NT	7.7%	coding (1335/2055 nt)	paaZ	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
	?	NC_002947	3704749 =	45 (0.900)					coding (1253/2055 nt)	paaZ	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
*	?	NC_002947	= 3747583	39 (0.720)	3 (0.060)	3/248	NT	6.8%	coding (1178/1746 nt)	kefB‑II	glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	= 3747640	46 (0.910)					coding (1121/1746 nt)	kefB‑II	glutathione‑regulated potassium/H+ antiporter
*	?	NC_002947	3792154 =	58 (1.080)	4 (0.080)	3/250	NT	6.9%	coding (1164/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
	?	NC_002947	3792203 =	53 (1.040)					coding (1115/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
*	?	NC_002947	3816242 =	63 (1.170)	5 (0.100)	5/250	NT	8.0%	coding (579/702 nt)	cpxR	two‑component system regulator CpxR
	?	NC_002947	3816291 =	56 (1.100)					coding (530/702 nt)	cpxR	two‑component system regulator CpxR
*	?	NC_002947	3820393 =	42 (0.780)	3 (0.060)	3/252	NT	6.9%	coding (484/966 nt)	endA	endonuclease I
	?	NC_002947	3820426 =	41 (0.800)					coding (517/966 nt)	endA	endonuclease I
*	?	NC_002947	= 3912599	63 (1.170)	4 (0.080)	4/250	NT	6.3%	coding (945/1092 nt)	PP_3452	GGDEF domain‑containing protein
	?	NC_002947	= 3912626	59 (1.160)					coding (972/1092 nt)	PP_3452	GGDEF domain‑containing protein
*	?	NC_002947	= 3930902	43 (0.800)	5 (0.100)	5/250	NT	11.1%	coding (206/1293 nt)	PP_5603	FAD dependent oxidoreductase
	?	NC_002947	= 3930930	39 (0.770)					coding (178/1293 nt)	PP_5603	FAD dependent oxidoreductase
*	?	NC_002947	3957090 =	46 (0.850)	3 (0.060)	3/252	NT	6.7%	coding (3295/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	3957124 =	39 (0.760)					coding (3261/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
*	?	NC_002947	= 3974208	49 (0.910)	5 (0.100)	5/250	NT	9.0%	coding (265/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 3974250	55 (1.080)					coding (223/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator
*	?	NC_002947	3976609 =	60 (1.110)	5 (0.100)	4/250	NT	8.6%	coding (259/1014 nt)	PP_3506	magnesium chelatase subunit ChII
	?	NC_002947	3976684 =	49 (0.960)					coding (184/1014 nt)	PP_3506	magnesium chelatase subunit ChII
*	?	NC_002947	4013887 =	41 (0.760)	4 (0.080)	4/246	NT	9.0%	coding (229/519 nt)	PP_3541	MgtC family transporter
	?	NC_002947	4013931 =	43 (0.860)					coding (185/519 nt)	PP_3541	MgtC family transporter
*	?	NC_002947	= 4015419	57 (1.060)	4 (0.080)	4/256	NT	6.9%	coding (775/1404 nt)	PP_3543	iron‑sulfur cluster‑binding protein
	?	NC_002947	= 4015483	53 (1.020)					coding (839/1404 nt)	PP_3543	iron‑sulfur cluster‑binding protein
*	?	NC_002947	4030015 =	41 (0.760)	4 (0.080)	4/256	NT	9.2%	coding (1393/1623 nt)	PP_3553	AMP‑binding domain‑containing protein
	?	NC_002947	4030072 =	39 (0.750)					coding (1450/1623 nt)	PP_3553	AMP‑binding domain‑containing protein
*	?	NC_002947	4078360 =	47 (0.870)	4 (0.080)	4/252	NT	8.4%	coding (837/1281 nt)	sdaC	serine:H+ symport permease
	?	NC_002947	4078394 =	42 (0.820)					coding (803/1281 nt)	sdaC	serine:H+ symport permease
*	?	NC_002947	= 4116891	45 (0.840)	4 (0.080)	4/252	NT	7.8%	coding (36/456 nt)	iorA‑II	isoquinoline 1‑oxidoreductase subunit alpha
	?	NC_002947	= 4116933	51 (0.990)					coding (78/456 nt)	iorA‑II	isoquinoline 1‑oxidoreductase subunit alpha
*	?	NC_002947	4159083 =	20 (0.370)	7 (0.150)	7/232	NT	35.4%	intergenic (+31/‑178)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4159143 =	8 (0.170)					intergenic (+91/‑118)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4167368	44 (0.820)	3 (0.060)	3/250	NT	6.2%	coding (108/1212 nt)	creA	creatinase
	?	NC_002947	= 4167395	49 (0.960)					coding (81/1212 nt)	creA	creatinase
*	?	NC_002947	4207063 =	55 (1.020)	3 (0.060)	3/252	NT	5.3%	coding (713/6624 nt)	PP_3691	DNA helicase‑related protein
	?	NC_002947	4207100 =	54 (1.050)					coding (676/6624 nt)	PP_3691	DNA helicase‑related protein
*	?	NC_002947	= 4246086	65 (1.210)	8 (0.160)	7/252	NT	11.8%	coding (189/1230 nt)	alr	alanine racemase
	?	NC_002947	= 4246121	58 (1.130)					coding (154/1230 nt)	alr	alanine racemase
*	?	NC_002947	4266531 =	59 (1.100)	5 (0.110)	5/230	NT	9.9%	intergenic (‑73/+73)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	4266602 =	40 (0.850)					intergenic (‑144/+2)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
*	?	NC_002947	= 4297836	50 (0.930)	3 (0.060)	3/242	NT	5.7%	coding (218/822 nt)	PP_3768	shikimate 5‑dehydrogenase
	?	NC_002947	= 4297923	54 (1.090)					coding (131/822 nt)	PP_3768	shikimate 5‑dehydrogenase
*	?	NC_002947	= 4313883	51 (0.950)	3 (0.060)	3/254	NT	5.9%	coding (85/1209 nt)	aspC	aminotransferase
	?	NC_002947	= 4313922	46 (0.890)					coding (124/1209 nt)	aspC	aminotransferase
*	?	NC_002947	4344481 =	61 (1.130)	4 (0.080)	3/250	NT	6.8%	coding (57/1308 nt)	PP_3818	phosphate‑binding protein
	?	NC_002947	4344552 =	52 (1.020)					coding (128/1308 nt)	PP_3818	phosphate‑binding protein
*	?	NC_002947	= 4345579	55 (1.020)	5 (0.100)	5/256	NT	8.5%	coding (1155/1308 nt)	PP_3818	phosphate‑binding protein
	?	NC_002947	= 4345626	55 (1.050)					coding (1202/1308 nt)	PP_3818	phosphate‑binding protein
*	?	NC_002947	4356249 =	56 (1.040)	4 (0.080)	4/246	NT	8.4%	coding (767/1092 nt)	modC	molybdate ABC transporter ATP‑binding protein ModC
	?	NC_002947	4356307 =	35 (0.700)					coding (825/1092 nt)	modC	molybdate ABC transporter ATP‑binding protein ModC
*	?	NC_002947	4365970 =	57 (1.060)	7 (0.140)	5/248	NT	12.3%	coding (759/1098 nt)	PP_3842	hypothetical protein
	?	NC_002947	4366008 =	46 (0.910)					coding (797/1098 nt)	PP_3842	hypothetical protein
*	?	NC_002947	= 4408994	44 (0.820)	3 (0.060)	3/242	NT	6.4%	coding (1320/1398 nt)	PP_3893	DNA helicase
	?	NC_002947	= 4409046	48 (0.970)					coding (1268/1398 nt)	PP_3893	DNA helicase
*	?	NC_002947	= 4446338	55 (1.020)	6 (0.120)	6/250	NT	10.2%	coding (82/807 nt)	nicD	N‑formylmaleamate deformylase
	?	NC_002947	= 4446384	53 (1.040)					coding (36/807 nt)	nicD	N‑formylmaleamate deformylase
*	?	NC_002947	4464118 =	43 (0.800)	4 (0.080)	4/250	NT	8.8%	coding (1837/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC
	?	NC_002947	4464151 =	42 (0.820)					coding (1804/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC
*	?	NC_002947	= 4479492	45 (0.840)	3 (0.060)	3/250	NT	6.5%	coding (843/1203 nt)	ybdR	Zn‑dependent oxidoreductase
	?	NC_002947	= 4479512	44 (0.860)					coding (863/1203 nt)	ybdR	Zn‑dependent oxidoreductase
*	?	NC_002947	4509677 =	58 (1.080)	4 (0.080)	4/250	NT	7.0%	coding (385/1281 nt)	serS	serine‑‑tRNA ligase
	?	NC_002947	4509734 =	52 (1.020)					coding (328/1281 nt)	serS	serine‑‑tRNA ligase
*	?	NC_002947	4537518 =	NA (NA)	5 (0.100)	5/254	NT	100%	coding (853/1533 nt)	PP_4025	transposase
	?	NC_002947	4537544 =	0 (0.000)					coding (879/1533 nt)	PP_4025	transposase
*	?	NC_002947	= 4541305	58 (1.080)	4 (0.080)	4/254	NT	6.7%	coding (22/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB
	?	NC_002947	= 4541332	55 (1.060)					coding (49/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB
*	?	NC_002947	= 4577950	39 (0.720)	3 (0.060)	3/252	NT	6.7%	coding (2161/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
	?	NC_002947	= 4577984	46 (0.900)					coding (2127/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
*	?	NC_002947	4586034 =	22 (0.410)	4 (0.090)	4/220	NT	24.0%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	7 (0.160)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4588826 =	75 (1.390)	4 (0.080)	4/256	NT	5.3%	coding (691/1164 nt)	ivd	isovaleryl‑CoA dehydrogenase
	?	NC_002947	4588866 =	70 (1.340)					coding (731/1164 nt)	ivd	isovaleryl‑CoA dehydrogenase
*	?	NC_002947	4601389 =	54 (1.000)	3 (0.060)	3/250	NT	5.4%	coding (503/633 nt)	PP_4073	hypothetical protein
	?	NC_002947	4601426 =	55 (1.080)					coding (466/633 nt)	PP_4073	hypothetical protein
*	?	NC_002947	= 4681254	43 (0.800)	4 (0.080)	4/252	NT	8.4%	coding (424/780 nt)	gloB	hydroxyacylglutathione hydrolase
	?	NC_002947	= 4681285	46 (0.900)					coding (455/780 nt)	gloB	hydroxyacylglutathione hydrolase
*	?	NC_002947	4694701 =	34 (0.630)	4 (0.080)	4/254	NT	11.8%	coding (2576/2931 nt)	PP_4154	class 3 aminotransferase
	?	NC_002947	4694725 =	27 (0.520)					coding (2600/2931 nt)	PP_4154	class 3 aminotransferase
*	?	NC_002947	4721005 =	41 (0.760)	4 (0.080)	4/254	NT	9.3%	coding (591/726 nt)	PP_4178	dienelactone hydrolase family protein
	?	NC_002947	4721065 =	39 (0.750)					coding (531/726 nt)	PP_4178	dienelactone hydrolase family protein
*	?	NC_002947	= 4722643	54 (1.000)	3 (0.060)	3/252	NT	5.5%	coding (921/1905 nt)	htpG	chaperone protein HtpG
	?	NC_002947	= 4722713	51 (0.990)					coding (851/1905 nt)	htpG	chaperone protein HtpG
*	?	NC_002947	= 4726198	51 (0.950)	3 (0.060)	3/252	NT	5.6%	coding (1184/1314 nt)	brnQ	branched‑chain amino acid transporter
	?	NC_002947	= 4726268	53 (1.030)					coding (1114/1314 nt)	brnQ	branched‑chain amino acid transporter
*	?	NC_002947	4736296 =	48 (0.890)	3 (0.060)	3/256	NT	6.5%	coding (290/705 nt)	sdhB	succinate dehydrogenase iron‑sulfur subunit
	?	NC_002947	4736394 =	40 (0.770)					coding (192/705 nt)	sdhB	succinate dehydrogenase iron‑sulfur subunit
*	?	NC_002947	= 4765593	54 (1.000)	3 (0.060)	3/252	NT	6.1%	coding (246/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	= 4765635	41 (0.800)					coding (288/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
*	?	NC_002947	4783885 =	69 (1.280)	5 (0.100)	5/246	NT	7.3%	coding (3429/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4783948 =	62 (1.240)					coding (3366/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4787379	42 (0.780)	3 (0.060)	3/252	NT	6.2%	coding (6461/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	= 4787406	51 (0.990)					coding (6434/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	4808174 =	0 (0.000)	18 (0.460)	13/194	NT	63.2%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	21 (0.530)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	0 (0.000)	19 (0.390)	18/240	NT	42.2%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	52 (1.060)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4832391 =	38 (0.710)	4 (0.080)	4/252	NT	10.0%	coding (800/1014 nt)	pvdY	hydroxyproline acetylase
	?	NC_002947	4832416 =	36 (0.700)					coding (775/1014 nt)	pvdY	hydroxyproline acetylase
*	?	NC_002947	= 4864624	76 (1.410)	4 (0.080)	4/254	NT	5.8%	coding (1249/3489 nt)	smc	chromosome partition protein Smc
	?	NC_002947	= 4864700	57 (1.100)					coding (1173/3489 nt)	smc	chromosome partition protein Smc
*	?	NC_002947	4898076 =	49 (0.910)	4 (0.080)	4/254	NT	7.4%	coding (468/957 nt)	PP_4306	hypothetical protein
	?	NC_002947	4898122 =	53 (1.020)					coding (422/957 nt)	PP_4306	hypothetical protein
*	?	NC_002947	= 4903956	50 (0.930)	4 (0.080)	4/254	NT	7.1%	coding (171/1194 nt)	PP_4311	D‑amino acid dehydrogenase small subunit
	?	NC_002947	= 4904017	56 (1.080)					coding (110/1194 nt)	PP_4311	D‑amino acid dehydrogenase small subunit
*	?	NC_002947	4914034 =	47 (0.870)	3 (0.060)	3/258	NT	5.9%	coding (665/1989 nt)	ccmF	holocytochrome c synthetase
	?	NC_002947	4914078 =	50 (0.950)					coding (621/1989 nt)	ccmF	holocytochrome c synthetase
*	?	NC_002947	4925636 =	54 (1.000)	4 (0.080)	4/256	NT	6.9%	coding (390/858 nt)	PP_4335	flagellar motor protein
	?	NC_002947	4925682 =	55 (1.050)					coding (344/858 nt)	PP_4335	flagellar motor protein
*	?	NC_002947	4933522 =	79 (1.470)	4 (0.080)	4/246	NT	5.9%	coding (927/1308 nt)	flhF	flagellar biosynthesis protein FlhF
	?	NC_002947	4933601 =	54 (1.080)					coding (848/1308 nt)	flhF	flagellar biosynthesis protein FlhF
*	?	NC_002947	= 4955816	49 (0.910)	3 (0.060)	3/248	NT	5.7%	coding (939/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4955847	53 (1.050)					coding (908/1374 nt)	fliI	flagellum‑specific ATP synthase
*	?	NC_002947	= 4992272	54 (1.000)	3 (0.060)	3/252	NT	5.9%	coding (229/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
	?	NC_002947	= 4992305	44 (0.860)					coding (262/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
*	?	NC_002947	= 5000218	42 (0.780)	3 (0.060)	3/250	NT	7.2%	coding (1071/1383 nt)	PP_4407	gamma‑aminobutyrate transporter
	?	NC_002947	= 5000241	37 (0.730)					coding (1094/1383 nt)	PP_4407	gamma‑aminobutyrate transporter
*	?	NC_002947	= 5027551	56 (1.040)	4 (0.080)	4/248	NT	6.5%	coding (861/993 nt)	ocd	ornithine cyclodeaminase
	?	NC_002947	= 5027585	63 (1.250)					coding (895/993 nt)	ocd	ornithine cyclodeaminase
*	?	NC_002947	5036927 =	NA (NA)	4 (0.080)	3/250	NT	NA	coding (19/1536 nt)	PP_4443	transposase
	?	NC_002947	5036999 =	NA (NA)					coding (91/1536 nt)	PP_4443	transposase
*	?	NC_002947	= 5037600	NA (NA)	3 (0.060)	3/248	NT	NA	coding (692/1536 nt)	PP_4443	transposase
	?	NC_002947	= 5037670	NA (NA)					coding (762/1536 nt)	PP_4443	transposase
*	?	NC_002947	5064017 =	48 (0.890)	3 (0.060)	3/248	NT	6.0%	coding (980/1293 nt)	PP_4461	MFS transporter
	?	NC_002947	5064051 =	49 (0.970)					coding (946/1293 nt)	PP_4461	MFS transporter
*	?	NC_002947	= 5103413	46 (0.850)	3 (0.060)	3/242	NT	6.4%	intergenic (+27/‑362)	PP_5694/yhhS	hypothetical protein/carbohydrate efflux transporter
	?	NC_002947	= 5103441	45 (0.910)					intergenic (+55/‑334)	PP_5694/yhhS	hypothetical protein/carbohydrate efflux transporter
*	?	NC_002947	5133434 =	69 (1.280)	5 (0.100)	4/256	NT	6.3%	coding (516/1359 nt)	tolC	agglutination protein
	?	NC_002947	5133494 =	81 (1.550)					coding (576/1359 nt)	tolC	agglutination protein
*	?	NC_002947	5142328 =	75 (1.390)	4 (0.080)	4/248	NT	6.2%	coding (663/1173 nt)	PP_4526	MFS transporter
	?	NC_002947	5142403 =	51 (1.010)					coding (738/1173 nt)	PP_4526	MFS transporter
*	?	NC_002947	5165795 =	45 (0.840)	4 (0.080)	4/254	NT	7.7%	coding (2085/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	5165832 =	53 (1.020)					coding (2048/3906 nt)	hrpA	ATP‑dependent helicase HrpA
*	?	NC_002947	5178987 =	56 (1.040)	4 (0.080)	4/248	NT	7.1%	coding (337/426 nt)	PP_4556	hypothetical protein
	?	NC_002947	5179039 =	52 (1.030)					coding (285/426 nt)	PP_4556	hypothetical protein
*	?	NC_002947	= 5240861	57 (1.060)	4 (0.080)	4/256	NT	6.3%	coding (423/807 nt)	PP_4618	hypothetical protein
	?	NC_002947	= 5240965	64 (1.230)					coding (527/807 nt)	PP_4618	hypothetical protein
*	?	NC_002947	= 5252370	45 (0.840)	4 (0.080)	4/250	NT	8.1%	coding (147/456 nt)	PP_4628	hypothetical protein
	?	NC_002947	= 5252435	48 (0.940)					coding (82/456 nt)	PP_4628	hypothetical protein
*	?	NC_002947	5258313 =	70 (1.300)	4 (0.080)	4/248	NT	5.9%	coding (844/1212 nt)	PP_4635	trans‑2‑enoyl‑CoA reductase
	?	NC_002947	5258382 =	62 (1.230)					coding (775/1212 nt)	PP_4635	trans‑2‑enoyl‑CoA reductase
*	?	NC_002947	5260332 =	70 (1.300)	6 (0.120)	4/254	NT	9.2%	coding (874/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
	?	NC_002947	5260396 =	51 (0.980)					coding (938/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
*	?	NC_002947	5264459 =	56 (1.040)	4 (0.080)	4/254	NT	6.8%	coding (69/198 nt)	PP_4640	hypothetical protein
	?	NC_002947	5264492 =	55 (1.060)					coding (36/198 nt)	PP_4640	hypothetical protein
*	?	NC_002947	5270051 =	35 (0.650)	7 (0.140)	6/254	NT	15.3%	coding (288/1371 nt)	radA	DNA repair enzyme
	?	NC_002947	5270112 =	44 (0.850)					coding (227/1371 nt)	radA	DNA repair enzyme
*	?	NC_002947	= 5273549	73 (1.360)	4 (0.080)	4/254	NT	5.4%	coding (696/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
	?	NC_002947	= 5273577	71 (1.370)					coding (724/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
*	?	NC_002947	5274000 =	47 (0.870)	4 (0.080)	4/238	NT	10.6%	intergenic (+22/+84)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	5274073 =	25 (0.520)					intergenic (+95/+11)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
*	?	NC_002947	= 5334560	65 (1.210)	3 (0.060)	3/252	NT	5.2%	coding (990/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	= 5334646	47 (0.910)					coding (1076/2976 nt)	PP_4695	two‑component system sensor histidine kinase
*	?	NC_002947	= 5371490	55 (1.020)	3 (0.060)	3/256	NT	5.6%	coding (447/3231 nt)	carB	carbamoyl‑phosphate synthase large subunit
	?	NC_002947	= 5371541	47 (0.900)					coding (396/3231 nt)	carB	carbamoyl‑phosphate synthase large subunit
*	?	NC_002947	5432474 =	69 (1.280)	4 (0.080)	4/250	NT	5.6%	coding (328/519 nt)	PP_5713	hypothetical protein
	?	NC_002947	5432525 =	69 (1.350)					coding (379/519 nt)	PP_5713	hypothetical protein
*	?	NC_002947	= 5456444	36 (0.670)	3 (0.060)	3/250	NT	7.9%	coding (176/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	= 5456493	36 (0.710)					coding (225/2607 nt)	leuS	leucine‑‑tRNA ligase
*	?	NC_002947	5493377 =	68 (1.260)	4 (0.080)	3/248	NT	5.8%	coding (639/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
	?	NC_002947	5493425 =	66 (1.310)					coding (591/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
*	?	NC_002947	= 5499350	40 (0.740)	4 (0.080)	4/254	NT	8.7%	coding (128/720 nt)	cobK	precorrin‑6x reductase
	?	NC_002947	= 5499391	46 (0.890)					coding (169/720 nt)	cobK	precorrin‑6x reductase
*	?	NC_002947	= 5513267	28 (0.520)	3 (0.070)	3/212	NT	11.2%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5513323	25 (0.580)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	= 5515852	51 (0.950)	4 (0.080)	4/254	NT	6.5%	coding (174/960 nt)	cbpA	curved DNA‑binding protein
	?	NC_002947	= 5515904	66 (1.270)					coding (122/960 nt)	cbpA	curved DNA‑binding protein
*	?	NC_002947	5523477 =	54 (1.000)	4 (0.080)	3/248	NT	7.5%	coding (1396/2067 nt)	yhjG	protein YhjG
	?	NC_002947	5523557 =	48 (0.950)					coding (1316/2067 nt)	yhjG	protein YhjG
*	?	NC_002947	5523916 =	71 (1.320)	5 (0.100)	5/254	NT	6.8%	coding (957/2067 nt)	yhjG	protein YhjG
	?	NC_002947	5523962 =	69 (1.330)					coding (911/2067 nt)	yhjG	protein YhjG
*	?	NC_002947	5536339 =	53 (0.980)	3 (0.060)	3/250	NT	5.7%	coding (144/828 nt)	nadE	NH(3)‑dependent NAD(+) synthetase
	?	NC_002947	5536392 =	50 (0.980)					coding (197/828 nt)	nadE	NH(3)‑dependent NAD(+) synthetase
*	?	NC_002947	= 5565274	63 (1.170)	3 (0.060)	3/254	NT	5.1%	coding (312/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
	?	NC_002947	= 5565366	50 (0.970)					coding (220/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
*	?	NC_002947	5571407 =	38 (0.710)	5 (0.100)	4/236	NT	14.7%	intergenic (+29/+112)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
	?	NC_002947	5571492 =	24 (0.500)					intergenic (+114/+27)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
*	?	NC_002947	= 5578021	59 (1.100)	3 (0.060)	3/252	NT	5.3%	coding (163/810 nt)	rhdA	thiosulfate sulfurtransferase
	?	NC_002947	= 5578058	51 (0.990)					coding (200/810 nt)	rhdA	thiosulfate sulfurtransferase
*	?	NC_002947	5606438 =	70 (1.300)	5 (0.100)	5/252	NT	7.5%	coding (1701/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB
	?	NC_002947	5606471 =	57 (1.110)					coding (1668/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB
*	?	NC_002947	5617601 =	51 (0.950)	3 (0.060)	3/254	NT	5.7%	coding (1051/1176 nt)	wzy	O‑antigen polymerase
	?	NC_002947	5617660 =	50 (0.970)					coding (992/1176 nt)	wzy	O‑antigen polymerase
*	?	NC_002947	= 5658270	51 (0.950)	3 (0.060)	3/250	NT	6.2%	coding (325/993 nt)	sahR	methionine metabolism transcriptional regulator
	?	NC_002947	= 5658305	42 (0.820)					coding (360/993 nt)	sahR	methionine metabolism transcriptional regulator
*	?	NC_002947	5724564 =	58 (1.080)	3 (0.060)	3/252	NT	5.3%	coding (2402/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H
	?	NC_002947	5724610 =	52 (1.010)					coding (2356/2574 nt)	opgH	glucans biosynthesis glucosyltransferase H
*	?	NC_002947	5746405 =	51 (0.950)	3 (0.060)	3/258	NT	5.6%	coding (375/423 nt)	PP_5042	hypothetical protein
	?	NC_002947	5746469 =	52 (0.990)					intergenic (+16/+83)	PP_5042/PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
*	?	NC_002947	= 5754738	56 (1.040)	4 (0.080)	4/256	NT	6.8%	coding (934/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
	?	NC_002947	= 5754774	55 (1.050)					coding (970/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
*	?	NC_002947	= 5755484	52 (0.970)	3 (0.060)	3/248	NT	5.4%	coding (598/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	= 5755518	57 (1.130)					coding (632/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
*	?	NC_002947	5758899 =	48 (0.890)	3 (0.060)	3/256	NT	6.6%	coding (33/438 nt)	PP_5051	hypothetical protein
	?	NC_002947	5758932 =	39 (0.750)					coding (15/474 nt)	trmL	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL
*	?	NC_002947	5773850 =	56 (1.040)	4 (0.080)	3/248	NT	7.3%	coding (413/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	5773914 =	49 (0.970)					coding (477/657 nt)	betI	choline‑responsive transcriptional repressor BetI
*	?	NC_002947	5783553 =	55 (1.020)	4 (0.080)	4/250	NT	6.6%	coding (2028/3309 nt)	kefA	intermediate mechanosensitive channel protein
	?	NC_002947	5783596 =	62 (1.220)					coding (2071/3309 nt)	kefA	intermediate mechanosensitive channel protein
*	?	NC_002947	= 5789571	65 (1.210)	7 (0.140)	6/246	NT	9.8%	coding (728/1278 nt)	ynfM	efflux transporter
	?	NC_002947	= 5789591	69 (1.380)					coding (748/1278 nt)	ynfM	efflux transporter
*	?	NC_002947	5808703 =	46 (0.850)	4 (0.080)	3/250	NT	8.9%	coding (586/1269 nt)	maeB	malic enzyme B
	?	NC_002947	5808753 =	38 (0.750)					coding (536/1269 nt)	maeB	malic enzyme B
*	?	NC_002947	= 5816871	7 (0.130)	8 (0.170)	5/228	NT	66.5%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816898	2 (0.040)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	= 5833097	74 (1.370)	4 (0.080)	4/254	NT	5.8%	coding (723/1356 nt)	PP_5112	peptidase
	?	NC_002947	= 5833140	58 (1.120)					coding (766/1356 nt)	PP_5112	peptidase
*	?	NC_002947	= 5857772	60 (1.110)	4 (0.080)	4/254	NT	6.3%	coding (321/1371 nt)	PP_5134	hypothetical protein
	?	NC_002947	= 5857793	61 (1.180)					coding (342/1371 nt)	PP_5134	hypothetical protein
*	?	NC_002947	5874726 =	66 (1.230)	5 (0.100)	5/254	NT	7.1%	coding (1445/1515 nt)	ilvA‑II	threonine deaminase
	?	NC_002947	5874768 =	67 (1.290)					coding (1403/1515 nt)	ilvA‑II	threonine deaminase
*	?	NC_002947	5890484 =	60 (1.110)	3 (0.060)	3/250	NT	5.7%	coding (2139/2367 nt)	PP_5164	penicillin amidase family protein
	?	NC_002947	5890539 =	42 (0.820)					coding (2194/2367 nt)	PP_5164	penicillin amidase family protein
*	?	NC_002947	5903771 =	16 (0.300)	5 (0.110)	4/232	NT	21.7%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5903831 =	22 (0.470)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	= 5920986	69 (1.280)	5 (0.100)	5/252	NT	7.4%	coding (1572/1674 nt)	PP_5190	type II secretion system protein
	?	NC_002947	= 5921015	59 (1.150)					coding (1601/1674 nt)	PP_5190	type II secretion system protein
*	?	NC_002947	5921192 =	56 (1.040)	4 (0.080)	4/254	NT	7.0%	coding (16/315 nt)	PP_5191	hypothetical protein
	?	NC_002947	5921242 =	53 (1.020)					coding (66/315 nt)	PP_5191	hypothetical protein
*	?	NC_002947	5941251 =	59 (1.100)	5 (0.100)	3/254	NT	8.6%	coding (1090/1113 nt)	yhhJ	translation‑like protein
	?	NC_002947	5941300 =	50 (0.970)					intergenic (+26/+155)	yhhJ/PP_5722	translation‑like protein/hypothetical protein
*	?	NC_002947	5943294 =	52 (0.970)	3 (0.060)	3/248	NT	5.6%	coding (680/978 nt)	PP_5210	alcohol dehydrogenase
	?	NC_002947	5943366 =	52 (1.030)					coding (752/978 nt)	PP_5210	alcohol dehydrogenase
*	?	NC_002947	= 5943622	29 (0.540)	5 (0.110)	4/220	NT	15.3%	intergenic (+30/+55)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
	?	NC_002947	= 5943643	31 (0.690)					intergenic (+51/+34)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
*	?	NC_002947	5989267 =	72 (1.340)	3 (0.060)	3/236	NT	5.1%	noncoding (16/87 nt)	PP_mr64	C4 ncRNA
	?	NC_002947	5989342 =	48 (1.000)					coding (53/399 nt)	PP_5247	hypothetical protein
*	?	NC_002947	5990819 =	64 (1.190)	3 (0.060)	3/240	NT	5.1%	intergenic (‑153/‑76)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
	?	NC_002947	5990863 =	53 (1.080)					intergenic (‑197/‑32)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
*	?	NC_002947	5995832 =	44 (0.820)	4 (0.080)	4/248	NT	7.8%	coding (1200/1983 nt)	PP_5252	hypothetical protein
	?	NC_002947	5995898 =	53 (1.050)					coding (1134/1983 nt)	PP_5252	hypothetical protein
*	?	NC_002947	6005922 =	40 (0.740)	3 (0.060)	3/252	NT	7.0%	coding (785/1395 nt)	ydcJ	metalloprotein
	?	NC_002947	6005959 =	41 (0.800)					coding (822/1395 nt)	ydcJ	metalloprotein
*	?	NC_002947	6021803 =	53 (0.980)	4 (0.080)	4/252	NT	7.3%	coding (11/1293 nt)	PP_5273	oxidoreductase
	?	NC_002947	6021845 =	51 (0.990)					coding (53/1293 nt)	PP_5273	oxidoreductase
*	?	NC_002947	= 6060444	54 (1.000)	6 (0.120)	6/236	NT	9.8%	intergenic (+80/+101)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	= 6060503	62 (1.290)					intergenic (+139/+42)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	6082850 =	61 (1.130)	3 (0.060)	3/254	NT	5.1%	coding (184/1083 nt)	purK	5‑(carboxyamino)imidazole ribonucleotide synthase
	?	NC_002947	6082897 =	54 (1.040)					coding (137/1083 nt)	purK	5‑(carboxyamino)imidazole ribonucleotide synthase
*	?	NC_002947	6088213 =	37 (0.690)	5 (0.100)	5/256	NT	11.9%	coding (435/1044 nt)	aphA	acetylpolyamine aminohydrolase
	?	NC_002947	6088266 =	38 (0.730)					coding (488/1044 nt)	aphA	acetylpolyamine aminohydrolase
*	?	NC_002947	6109003 =	51 (0.950)	4 (0.080)	3/250	NT	7.8%	coding (635/972 nt)	PP_5359	CobW/P47K family protein
	?	NC_002947	6109049 =	46 (0.900)					coding (589/972 nt)	PP_5359	CobW/P47K family protein
*	?	NC_002947	= 6164712	47 (0.870)	5 (0.100)	3/254	NT	8.6%	coding (571/2013 nt)	PP_5405	transposase
	?	NC_002947	= 6164746	61 (1.180)					coding (537/2013 nt)	PP_5405	transposase