breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 9,907 A→C 7.4% intergenic (+14/+21) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 9,908 G→T 7.3% intergenic (+15/+20) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 13,436 T→C 6.2% V425A (GTG→GCG)  dnaK → chaperone Hsp70, with co‑chaperone DnaJ
RA 79,405 C→T 9.5% A17T (GCC→ACC)  leuD ← 3‑isopropylmalate dehydratase small subunit
RA 114,510 A→T 12.1% intergenic (+23/+12) guaC → / ← hofC GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA 132,415 A→C 23.6% K267N (AAA→AAC)  acnB → aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase
RA 169,748 T→A 7.2% intergenic (+21/‑30) fhuA → / → fhuC ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase
RA 169,749 T→A 7.2% intergenic (+22/‑29) fhuA → / → fhuC ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase
RA 172,496 A→G 8.5% Q345Q (CAA→CAG)  fhuB → iron(3+)‑hydroxamate import ABC transporter permease
RA 172,499 T→C 8.7% H346H (CAT→CAC)  fhuB → iron(3+)‑hydroxamate import ABC transporter permease
RA 172,500 G→A 8.7% V347M (GTG→ATG)  fhuB → iron(3+)‑hydroxamate import ABC transporter permease
RA 182,659 C→T 7.8% A66V (GCG→GTG)  cdaR → carbohydrate diacid regulon transcriptional regulator; autoregulator
RA 182,661 G→C 7.9% V67L (GTA→CTA)  cdaR → carbohydrate diacid regulon transcriptional regulator; autoregulator
RA 182,664 G→C 7.8% A68P (GCA→CCA) ‡ cdaR → carbohydrate diacid regulon transcriptional regulator; autoregulator
RA 182,666 A→G 8.2% A68A (GCA→GCG) ‡ cdaR → carbohydrate diacid regulon transcriptional regulator; autoregulator
RA 183,249 T→A 8.4% S263T (TCC→ACC)  cdaR → carbohydrate diacid regulon transcriptional regulator; autoregulator
RA 192,579 A→T 8.1% *242L (TAA→TTA)  pyrH → uridylate kinase
RA 207,483 A→C 5.6% V786V (GTA→GTC)  dnaE → DNA polymerase III alpha subunit
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 263,351 T→A 9.0% S107C (AGC→TGC)  ykfI ← CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA 263,352 T→A 7.6% Q106H (CAA→CAT) ‡ ykfI ← CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA 263,353 T→A 7.8% Q106L (CAA→CTA) ‡ ykfI ← CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA 298,557 A→C 29.8% L57R (CTC→CGC)  paoD ← moco insertion factor for PaoABC aldehyde oxidoreductase
RA 299,378 A→T 6.8% V519V (GTT→GTA)  paoC ← PaoABC aldehyde oxidoreductase, Moco‑containing subunit
RA 314,255 T→C 7.1% intergenic (‑450/‑102) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 314,258 G→A 7.1% intergenic (‑453/‑99) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 329,503 A→G 6.6% N14S (AAT→AGT)  betT → choline transporter of high affinity
RA 329,509 T→C 6.6% V16A (GTG→GCG)  betT → choline transporter of high affinity
RA 329,512 T→A 6.4% V17E (GTG→GAG)  betT → choline transporter of high affinity
RA 329,514 T→G 8.0% F18V (TTT→GTT) ‡ betT → choline transporter of high affinity
RA 329,516 T→G 6.5% F18L (TTT→TTG) ‡ betT → choline transporter of high affinity
RA 329,519 C→A 8.6% Y19* (TAC→TAA)  betT → choline transporter of high affinity
RA 329,521 C→A 6.9% T20N (ACC→AAC)  betT → choline transporter of high affinity
RA 329,523 T→A 6.9% S21T (TCC→ACC)  betT → choline transporter of high affinity
RA 329,526 G→A 6.9% A22T (GCC→ACC)  betT → choline transporter of high affinity
RA 329,532 C→T 8.2% L24L (CTG→TTG)  betT → choline transporter of high affinity
RA 329,542 T→C 6.0% L27S (TTG→TCG) ‡ betT → choline transporter of high affinity
RA 329,543 G→C 5.6% L27F (TTG→TTC) ‡ betT → choline transporter of high affinity
RA 337,518 G→A 7.2% P247P (CCG→CCA)  yahF → putative NAD(P)‑binding succinyl‑CoA synthase
RA 361,220 A→C 5.9% intergenic (+74/+29) cynX → / ← lacA putative cyanate transporter/thiogalactoside acetyltransferase
RA 361,901 T→G 7.6% intergenic (‑41/+25) lacA ← / ← lacY thiogalactoside acetyltransferase/lactose permease
RA 384,263:1 +A 5.8% coding (354/558 nt) yaiS ← putative PIG‑L family deacetylase
RA 481,225 T→G 8.4% intergenic (‑517/+29) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 495,027 T→G 5.4% intergenic (+17/‑93) recR → / → htpG gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase
RA 495,029 A→T 5.5% intergenic (+19/‑91) recR → / → htpG gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase
RA 508,748 C→A 6.2% intergenic (+189/+127) ybaQ → / ← copA putative DNA‑binding transcriptional regulator/copper transporter
RA 525,739 G→C 6.8% E827Q (GAG→CAG) ‡ rhsD → Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
RA 525,740 A→T 7.1% E827V (GAG→GTG) ‡ rhsD → Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
RA 525,741 G→C 6.8% E827D (GAG→GAC) ‡ rhsD → Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
RA 537,115 C→T 5.8% A177V (GCG→GTG)  glxR → tartronate semialdehyde reductase, NADH‑dependent
RA 603,391 C→G 6.5% intergenic (+56/+25) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,393 T→A 7.2% intergenic (+58/+23) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,395 C→G 6.7% intergenic (+60/+21) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 657,531 T→G 6.3% intergenic (+30/+24) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,533 A→T 5.1% intergenic (+32/+22) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,535 C→A 5.6% intergenic (+34/+20) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 672,242 T→G 8.0% I848L (ATT→CTT)  leuS ← leucyl‑tRNA synthetase
RA 672,243 C→T 8.1% V847V (GTG→GTA) ‡ leuS ← leucyl‑tRNA synthetase
RA 672,244 A→G 8.2% V847A (GTG→GCG) ‡ leuS ← leucyl‑tRNA synthetase
RA 672,245 C→A 8.3% V847L (GTG→TTG) ‡ leuS ← leucyl‑tRNA synthetase
RA 699,874 A→C 13.8% G151G (GGT→GGG)  umpH ← UMP phosphatase
RA 794,938 C→A 6.2% intergenic (+16/‑151) acrZ → / → modA AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein
RA 794,939 T→C 6.1% intergenic (+17/‑150) acrZ → / → modA AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein
RA 794,943 T→G 7.8% intergenic (+21/‑146) acrZ → / → modA AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein
RA 832,252 T→A 8.1% intergenic (+16/+216) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 832,253 A→T 7.5% intergenic (+17/+215) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 879,700 T→C 6.4% V320A (GTG→GCG)  yliI → soluble aldose sugar dehydrogenase
RA 913,814 T→C 5.7% M1M (ATG→GTG) † hcp ← hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases
RA 922,314:1 +C 12.0% intergenic (+21/+52) macB → / ← cspD macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog
RA 950,314 A→T 7.9% intergenic (+56/+26) ycaK → / ← pflA putative NAD(P)H‑dependent oxidoreductase/pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase
RA 954,789 T→A 6.3% intergenic (‑323/+83) focA ← / ← ycaO formate channel/ribosomal protein S12 methylthiotransferase accessory factor
RA 964,256 G→A 6.8% intergenic (+144/‑64) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 967,110 A→T 6.0% S164C (AGT→TGT)  msbA → lipid ABC transporter permease/ATPase
RA 970,205 G→A 6.6% E273K (GAG→AAG)  ycaQ → DUF1006 family protein with C‑terminal wHTH domain
RA 987,420 A→C 5.6% intergenic (‑438/+165) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 987,421 A→T 6.7% intergenic (‑439/+164) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 987,422 G→T 5.7% intergenic (‑440/+163) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 1,018,249 G→C 6.6% S17R (AGC→AGG) ‡ ycbZ ← putative peptidase
RA 1,018,251 T→G 6.4% S17R (AGC→CGC) ‡ ycbZ ← putative peptidase
RA 1,018,254 C→A 6.2% D16Y (GAT→TAT)  ycbZ ← putative peptidase
RA 1,018,256 G→C 6.1% T15S (ACC→AGC)  ycbZ ← putative peptidase
RA 1,028,994 T→A 5.6% I326F (ATT→TTT)  rlmI ← 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent
RA 1,040,759 C→T 7.9% T48M (ACG→ATG)  appA → phosphoanhydride phosphorylase
RA 1,089,876 A→T 5.8% F805Y (TTC→TAC)  pgaA ← biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein
RA 1,092,127 A→G 8.9% S55P (TCA→CCA)  pgaA ← biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein
RA 1,112,513 C→T 6.2% Q551* (CAA→TAA)  opgH → OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist
RA 1,134,662 A→C 6.3% intergenic (+105/‑67) flgF → / → flgG flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod
RA 1,153,213 T→A 5.2% intergenic (+33/‑87) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,159,335 G→T 5.8% intergenic (+33/+27) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,159,336 A→C 6.4% intergenic (+34/+26) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,169,380 T→C 9.5% intergenic (+50/+32) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,382 C→G 9.5% intergenic (+52/+30) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,384 G→A 9.5% intergenic (+54/+28) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,177,101 G→T 8.2% V161V (GTG→GTT)  lolD → outer membrane‑specific lipoprotein transporter subunit
RA 1,198,609 C→T 5.9% intergenic (‑372/‑86) ymfE ← / → lit e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage
RA 1,203,009 G→C 5.0% intergenic (‑76/‑15) cohE ← / → croE e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator
RA 1,259,051 T→C 6.4% D87D (GAT→GAC)  ychH → DUF2583 family putative inner membrane protein
RA 1,261,657 C→A 7.6% M73I (ATG→ATT)  prs ← phosphoribosylpyrophosphate synthase
RA 1,287,419 T→A 12.4% intergenic (‑91/+119) tyrV ← / ← tyrT tRNA‑Tyr/tRNA‑Tyr
RA 1,287,420 G→C 12.8% intergenic (‑92/+118) tyrV ← / ← tyrT tRNA‑Tyr/tRNA‑Tyr
RA 1,287,421 T→A 12.4% intergenic (‑93/+117) tyrV ← / ← tyrT tRNA‑Tyr/tRNA‑Tyr
RA 1,310,831 T→C 5.3% D12G (GAT→GGT)  yciI ← putative DGPF domain‑containing enzyme
RA 1,311,831 C→T 6.3% intergenic (+23/+17) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,355,001 G→A 6.7% T157I (ACC→ATC)  sapB ← antimicrobial peptide transport ABC transporter permease
RA 1,355,003 A→T 6.8% I156I (ATT→ATA) ‡ sapB ← antimicrobial peptide transport ABC transporter permease
RA 1,355,005 T→C 6.8% I156V (ATT→GTT) ‡ sapB ← antimicrobial peptide transport ABC transporter permease
RA 1,403,990 C→T 6.6% M192I (ATG→ATA)  abgA ← p‑aminobenzoyl‑glutamate hydrolase, A subunit
RA 1,413,964 C→T 6.5% intergenic (‑37/+20) ralR ← / ← recT Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA 1,413,966 T→A 5.9% intergenic (‑39/+18) ralR ← / ← recT Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA 1,413,968 A→G 6.4% intergenic (‑41/+16) ralR ← / ← recT Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA 1,442,973 T→C 8.3% intergenic (‑130/‑78) ldhA ← / → ydbH fermentative D‑lactate dehydrogenase, NAD‑dependent/putative membrane‑anchored protein, function unknown
RA 1,457,528 G→A 6.9% R11Q (CGA→CAA)  paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,457,531 T→A 7.0% V12E (GTA→GAA) ‡ paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,457,532 A→C 6.5% V12V (GTA→GTC) ‡ paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,457,534 T→C 7.5% L13S (TTG→TCG)  paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,457,976 A→T 10.8% G160G (GGA→GGT)  paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,457,979 A→T 10.9% E161D (GAA→GAT)  paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,457,981 G→C 11.1% S162T (AGT→ACT)  paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,457,983 A→T 10.9% I163F (ATC→TTC)  paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,457,986 A→T 11.1% T164S (ACC→TCC)  paaF → 2,3‑dehydroadipyl‑CoA hydratase
RA 1,488,297 A→G 6.1% A22A (GCA→GCG)  aldA → aldehyde dehydrogenase A, NAD‑linked
RA 1,505,421 C→A 8.3% L220L (CTG→CTT)  ydcO ← BenE family inner membrane putative transporter
RA 1,517,055 C→A 8.0% intergenic (+53/+44) patD → / ← yncL gamma‑aminobutyraldehyde dehydrogenase/stress‑induced small inner membrane enterobacterial protein
RA 1,517,481 C→G 5.7% R31R (CGC→CGG)  ydcX → DUF2566 family protein
RA 1,530,496 G→T 10.0% intergenic (+92/‑90) ydcD → / → yncI putative immunity protein for RhsE/pseudogene
RA 1,559,725 A→T 10.3% D62E (GAT→GAA)  ddpC ← D,D‑dipeptide ABC transporter permease
RA 1,567,466 G→C 6.6% intergenic (‑326/+38) dosC ← / ← yddW diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog
RA 1,567,467 G→T 6.9% intergenic (‑327/+37) dosC ← / ← yddW diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog
RA 1,567,472 G→C 6.1% intergenic (‑332/+32) dosC ← / ← yddW diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog
RA 1,607,820 T→G 13.5% L159V (TTG→GTG)  tam → trans‑aconitate methyltransferase
RA 1,642,370 C→G 14.6% intergenic (+303/+119) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,642,373 C→G 14.6% intergenic (+306/+116) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,664,232 A→G 7.5% S208S (TCA→TCG)  ynfH → oxidoreductase, membrane subunit
RA 1,692,978 A→C 6.4% L429R (CTC→CGC)  uidB ← glucuronide transporter
RA 1,698,585 T→G 12.2% E199A (GAA→GCA)  malI ← transcriptional repressor of Mal regulon
RA 1,698,587 T→A 12.5% A198A (GCA→GCT) ‡ malI ← transcriptional repressor of Mal regulon
RA 1,698,589 C→A 11.8% A198S (GCA→TCA) ‡ malI ← transcriptional repressor of Mal regulon
RA 1,752,615 Δ1 bp 6.2% coding (1216/2103 nt) ydhV ← putative oxidoreductase subunit
RA 1,763,450 A→G 8.2% V187A (GTG→GCG)  sufB ← component of SufBCD Fe‑S cluster assembly scaffold
RA 1,797,368 C→A 8.8% V193F (GTT→TTT)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,810,062 T→C 6.3% intergenic (+14/‑149) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,810,065 T→G 6.4% intergenic (+17/‑146) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,810,066 C→A 9.7% intergenic (+18/‑145) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,810,069 G→A 6.4% intergenic (+21/‑142) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,821,241 T→A 6.4% intergenic (‑27/+58) chbC ← / ← chbB N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS/N,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS
RA 1,821,243 A→T 6.4% intergenic (‑29/+56) chbC ← / ← chbB N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS/N,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS
RA 1,821,244 A→T 6.4% intergenic (‑30/+55) chbC ← / ← chbB N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS/N,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS
RA 1,836,904 A→G 5.4% S278G (AGC→GGC) ‡ ynjB → putative ABC transporter periplasmic binding protein
RA 1,836,905 G→C 5.8% S278T (AGC→ACC) ‡ ynjB → putative ABC transporter periplasmic binding protein
RA 1,859,775 A→C 11.2% V152G (GTT→GGT)  ydjK ← putative MFS sugar transporter, membrane protein
RA 1,860,139 A→C 18.7% F31V (TTT→GTT)  ydjK ← putative MFS sugar transporter, membrane protein
RA 1,865,682 G→C 14.6% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,879,846 T→G 20.0% T35P (ACG→CCG)  yeaR ← DUF1971 family protein, nitrate‑inducible
RA 1,886,828 T→G 11.1% intergenic (+18/+36) yeaX → / ← rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
RA 1,900,287 A→G 5.2% T433T (ACT→ACC)  yoaE ← putative membrane protein/conserved protein
RA 1,932,094 C→G 9.6% intergenic (+35/+21) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,932,096 C→G 9.6% intergenic (+37/+19) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,936,555 T→C 7.4% intergenic (‑241/‑97) zwf ← / → yebK glucose‑6‑phosphate 1‑dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,942,124 T→C 6.8% T154A (ACA→GCA)  znuA ← zinc ABC transporter periplasmic binding protein
RA 1,944,234 A→C 7.1% intergenic (+35/+112) znuB → / ← ruvB zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome
MC JC 1,978,503 Δ776 bp 100% insB1–insA insB1, insA
RA 1,985,112 C→G 9.7% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 1,987,857 C→T 9.5% intergenic (‑99/+16) yecJ ← / ← azuC DUF2766 family protein/acid‑inducible small membrane‑associated protein
RA 1,987,858 G→C 9.4% intergenic (‑100/+15) yecJ ← / ← azuC DUF2766 family protein/acid‑inducible small membrane‑associated protein
RA 1,987,859 G→C 10.5% intergenic (‑101/+14) yecJ ← / ← azuC DUF2766 family protein/acid‑inducible small membrane‑associated protein
RA 1,987,860 A→G 9.1% intergenic (‑102/+13) yecJ ← / ← azuC DUF2766 family protein/acid‑inducible small membrane‑associated protein
RA 1,996,061 C→G 6.2% intergenic (+19/+49) yecF → / ← sdiA DUF2594 family protein/quorum‑sensing transcriptional activator
RA 1,999,231 T→A 9.6% T84S (ACT→TCT)  dcyD ← D‑cysteine desulfhydrase, PLP‑dependent
RA 2,019,460 G→A 100% V359I (GTC→ATC)  fliK → flagellar hook‑length control protein
RA 2,024,609 T→G 5.7% intergenic (+18/+26) rcsA → / ← dsrB transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein
RA 2,024,611 T→A 5.7% intergenic (+20/+24) rcsA → / ← dsrB transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein
RA 2,024,612 C→A 5.7% intergenic (+21/+23) rcsA → / ← dsrB transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein
RA 2,030,729 G→T 10.0% H64N (CAT→AAT)  vsr ← DNA mismatch endonuclease of very short patch repair
RA 2,031,635 T→G 22.7% N228T (AAC→ACC)  dcm ← DNA cytosine methyltransferase
RA 2,031,976 G→A 7.7% S114S (AGC→AGT)  dcm ← DNA cytosine methyltransferase
RA 2,044,725 T→A 5.3% intergenic (+101/‑213) asnT → / → yeeJ tRNA‑Asn/putative adhesin
RA 2,044,727 T→A 5.3% intergenic (+103/‑211) asnT → / → yeeJ tRNA‑Asn/putative adhesin
RA 2,044,729 T→A 5.7% intergenic (+105/‑209) asnT → / → yeeJ tRNA‑Asn/putative adhesin
RA 2,044,733 T→C 5.5% intergenic (+109/‑205) asnT → / → yeeJ tRNA‑Asn/putative adhesin
RA 2,089,854 A→T 9.3% intergenic (‑141/‑142) yefM ← / → hisL antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide
RA 2,103,105 C→A 5.3% pseudogene (285/446 nt) wbbL ← pseudogene, lipopolysaccharide biosynthesis protein
RA 2,103,106 T→A 5.4% pseudogene (284/446 nt) wbbL ← pseudogene, lipopolysaccharide biosynthesis protein
RA 2,103,107 T→G 5.9% pseudogene (283/446 nt) wbbL ← pseudogene, lipopolysaccharide biosynthesis protein
RA 2,115,851 A→C 17.2% S16A (TCG→GCG)  wcaM ← colanic acid biosynthesis protein
RA 2,123,637 T→A 8.3% E295V (GAG→GTG)  cpsB ← mannose‑1‑phosphate guanyltransferase
RA 2,153,464 T→G 8.5% intergenic (+13/‑180) sibA → / → sibB sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein
RA 2,153,465 C→G 7.4% intergenic (+14/‑179) sibA → / → sibB sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein
RA 2,153,466 C→A 9.3% intergenic (+15/‑178) sibA → / → sibB sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein
RA 2,155,996 A→G 7.8% Q245R (CAA→CGA)  mdtB → multidrug efflux system, subunit B
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,245 G→T 22.7% intergenic (‑41/+267) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,229,322 C→G 12.0% intergenic (+257/+116) yohP → / ← dusC uncharacterized protein/tRNA‑dihydrouridine synthase C
RA 2,229,323 C→G 13.6% intergenic (+258/+115) yohP → / ← dusC uncharacterized protein/tRNA‑dihydrouridine synthase C
RA 2,247,030 G→A 8.5% intergenic (‑261/+33) cirA ← / ← lysP colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA 2,247,031 G→A 7.0% intergenic (‑262/+32) cirA ← / ← lysP colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA 2,247,032 T→C 8.5% intergenic (‑263/+31) cirA ← / ← lysP colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA 2,247,033 T→C 7.2% intergenic (‑264/+30) cirA ← / ← lysP colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA 2,270,602 T→C 8.6% intergenic (+57/‑124) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,270,605 G→A 8.7% intergenic (+60/‑121) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,311,616 C→T 7.5% intergenic (‑82/+30) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,311,619 A→G 7.4% intergenic (‑85/+27) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,331,387 T→C 6.4% pseudogene (3016/4605 nt) yfaS ← pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein
RA 2,348,789 C→A 6.2% intergenic (+21/+33) yfaE → / ← inaA ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase
RA 2,348,790 A→G 6.2% intergenic (+22/+32) yfaE → / ← inaA ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase
RA 2,348,795 T→A 6.5% intergenic (+27/+27) yfaE → / ← inaA ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase
RA 2,348,798 T→A 6.4% intergenic (+30/+24) yfaE → / ← inaA ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase
RA 2,348,803 C→T 6.3% intergenic (+35/+19) yfaE → / ← inaA ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase
RA 2,348,804 T→G 6.3% intergenic (+36/+18) yfaE → / ← inaA ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase
RA 2,380,694 A→G 5.7% intergenic (‑51/+28) menF ← / ← elaB isochorismate synthase 2/putative membrane‑anchored DUF883 family ribosome‑binding protein
RA 2,390,012 Δ1 bp 6.3% intergenic (+48/+36) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,390,016:1 +C 6.2% intergenic (+52/+32) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,407,898 A→C 11.5% Q113P (CAG→CCG) ‡ alaA → glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,407,899 G→T 10.2% Q113H (CAG→CAT) ‡ alaA → glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,414,689 C→G 8.2% intergenic (+17/‑58) ackA → / → pta acetate kinase A and propionate kinase 2/phosphate acetyltransferase
RA 2,449,200 G→A 8.5% intergenic (+43/+28) smrB → / ← yfcO putative DNA endonuclease/DUF2544 family putative outer membrane protein
RA 2,449,201 A→T 8.7% intergenic (+44/+27) smrB → / ← yfcO putative DNA endonuclease/DUF2544 family putative outer membrane protein
RA 2,449,202 A→T 10.7% intergenic (+45/+26) smrB → / ← yfcO putative DNA endonuclease/DUF2544 family putative outer membrane protein
RA 2,449,203 T→C 7.8% intergenic (+46/+25) smrB → / ← yfcO putative DNA endonuclease/DUF2544 family putative outer membrane protein
RA 2,462,677 A→T 6.7% intergenic (+31/‑335) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,462,678 T→A 6.6% intergenic (+32/‑334) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,462,679 A→T 6.9% intergenic (+33/‑333) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,470,482 C→A 9.8% intergenic (+20/‑333) gtrS → / → tfaS serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related
RA 2,482,839 C→G 6.8% L167F (TTG→TTC)  emrK ← multidrug resistance efflux pump membrane fusion protein
RA 2,503,523 A→C 12.8% R321R (CGT→CGG)  fryA ← putative PTS enzyme: Hpr, enzyme I and IIA components
RA 2,523,798 T→G 9.1% D63A (GAC→GCC)  xapB ← xanthosine transporter
RA 2,532,268 T→C 6.9% intergenic (+44/‑141) cysZ → / → cysK sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,532,272 T→A 6.9% intergenic (+48/‑137) cysZ → / → cysK sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,532,275 T→A 9.0% intergenic (+51/‑134) cysZ → / → cysK sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,549,931 G→A 6.0% I205I (ATC→ATT)  yfeX ← porphyrinogen oxidase, cytoplasmic
RA 2,553,466 T→G 7.9% L81R (CTT→CGT)  hemF → coproporphyrinogen III oxidase
RA 2,590,767 T→C 7.8% intergenic (+59/+40) acrD → / ← ypfM aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA 2,590,771 C→G 7.8% intergenic (+63/+36) acrD → / ← ypfM aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA 2,596,873 Δ1 bp 8.6% intergenic (‑136/+32) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,596,878:1 +G 10.0% intergenic (‑141/+27) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,600,932 T→C 5.3% L152P (CTG→CCG)  bcp → peroxiredoxin; thiol peroxidase, thioredoxin‑dependent
RA 2,623,600 C→T 6.4% P186L (CCG→CTG)  ppk → polyphosphate kinase, component of RNA degradosome
RA 2,684,192 A→G 5.2% intergenic (+136/+62) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,684,193 A→C 5.2% intergenic (+137/+61) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,684,200 C→A 5.3% intergenic (+144/+54) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,691,171 T→A 5.2% noncoding (170/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,173 A→T 5.1% noncoding (168/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,698,883 A→G 6.9% N42S (AAC→AGC)  yfhH → putative DNA‑binding transcriptional regulator
RA 2,731,073 A→T 8.2% noncoding (85/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,731,074 A→T 10.1% noncoding (84/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,735,175 T→C 5.5% L279L (CTA→CTG)  rluD ← 23S rRNA pseudouridine(1911,1915,1917) synthase
RA 2,742,794 G→T 10.3% E138* (GAA→TAA) ‡ yfiN → putative membrane‑anchored diguanylate cyclase
RA 2,742,795 A→T 10.8% E138V (GAA→GTA) ‡ yfiN → putative membrane‑anchored diguanylate cyclase
RA 2,742,796 A→C 10.3% E138D (GAA→GAC) ‡ yfiN → putative membrane‑anchored diguanylate cyclase
RA 2,746,403 C→T 7.3% intergenic (‑218/+31) rpsP ← / ← ffh 30S ribosomal subunit protein S16/Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
RA 2,761,664 T→A 5.9% K626M (AAG→ATG)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,768,609 T→C 8.7% intergenic (+36/‑56) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,614 A→C 8.5% intergenic (+41/‑51) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,615 G→T 8.6% intergenic (+42/‑50) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,620 G→A 8.4% intergenic (+47/‑45) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,777,571 A→G 8.1% D40G (GAC→GGC)  ypjF → CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,777,573 A→G 8.0% T41A (ACG→GCG) ‡ ypjF → CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,777,574 C→T 8.0% T41M (ACG→ATG) ‡ ypjF → CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,777,576 C→T 8.0% P42S (CCG→TCG)  ypjF → CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,778,124 A→C 6.5% intergenic (+342/+22) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,800,515 C→A 6.5% intergenic (+40/‑208) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,800,517 T→A 6.7% intergenic (+42/‑206) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,800,519 T→G 7.5% intergenic (+44/‑204) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,814,174 T→A 8.2% intergenic (+20/+44) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA 2,814,175 T→A 9.3% intergenic (+21/+43) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA 2,870,657 A→T 8.2% V216V (GTT→GTA)  truD ← tRNA(Glu) pseudouridine(13) synthase
RA 2,907,998 A→T 8.6% intergenic (‑57/+31) eno ← / ← pyrG enolase/CTP synthetase
RA 2,944,391 T→G 6.5% L352R (CTG→CGG)  csdA → cysteine sulfinate desulfinase
RA 2,944,394 G→C 7.2% R353P (CGG→CCG) ‡ csdA → cysteine sulfinate desulfinase
RA 2,944,395 G→C 7.1% R353R (CGG→CGC) ‡ csdA → cysteine sulfinate desulfinase
RA 2,944,398 C→A 7.1% A354A (GCC→GCA)  csdA → cysteine sulfinate desulfinase
RA 2,945,012 T→G 7.0% intergenic (+27/+24) csdE → / ← tcdA CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA
RA 2,949,654 C→G 7.0% P138R (CCG→CGG)  argA → amino acid N‑acetyltransferase and inactive acetylglutamate kinase
RA 2,951,946 G→A 7.2% G172G (GGC→GGT)  recD ← exonuclease V (RecBCD complex), alpha chain
RA 2,952,104 Δ1 bp 5.8% coding (358/1827 nt) recD ← exonuclease V (RecBCD complex), alpha chain
RA 2,960,926 G→C 10.3% G501G (GGC→GGG)  recC ← exonuclease V (RecBCD complex), gamma chain
RA 2,961,248 A→T 6.2% L394Q (CTG→CAG)  recC ← exonuclease V (RecBCD complex), gamma chain
RA 2,961,251 A→T 6.3% L393Q (CTG→CAG)  recC ← exonuclease V (RecBCD complex), gamma chain
RA 2,972,652 A→T 7.5% intergenic (+15/+17) tas → / ← lplT putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter
RA 2,987,103 C→T 12.1% intergenic (+27/‑433) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
RA 2,987,104 T→A 12.2% intergenic (+28/‑432) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
RA 2,987,105 A→G 12.1% intergenic (+29/‑431) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
JC JC 2,988,663 IS5 (–) +3 bp 45.9% coding (162‑164/810 nt) yqeI → putative transcriptional regulator
RA 2,993,279 G→T 7.7% D396Y (GAC→TAC)  ygeH → putative transcriptional regulator
RA 3,002,530 G→A 100% G729D (GGT→GAT)  xdhA → xanthine dehydrogenase, molybdenum binding subunit
RA 3,061,817 G→C 6.3% W323S (TGG→TCG)  scpA → methylmalonyl‑CoA mutase
RA 3,066,308 A→T 9.4% I289N (ATT→AAT) ‡ ygfI ← putative DNA‑binding transcriptional regulator
RA 3,066,309 T→A 9.4% I289F (ATT→TTT) ‡ ygfI ← putative DNA‑binding transcriptional regulator
RA 3,066,310 A→T 9.4% H288Q (CAT→CAA)  ygfI ← putative DNA‑binding transcriptional regulator
RA 3,066,319 Δ1 bp 6.0% coding (855/897 nt) ygfI ← putative DNA‑binding transcriptional regulator
RA 3,079,616 G→T 5.1% intergenic (‑286/+28) cmtB ← / ← tktA putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding
RA 3,079,617 A→C 5.4% intergenic (‑287/+27) cmtB ← / ← tktA putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding
RA 3,079,618 A→G 5.4% intergenic (‑288/+26) cmtB ← / ← tktA putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding
RA 3,122,884 G→A 6.2% Q308* (CAA→TAA)  glcB ← malate synthase G
RA 3,136,629 C→A 7.0% intergenic (‑258/+34) pitB ← / ← gss phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase
RA 3,139,682 T→G 6.3% intergenic (+89/+34) yghU → / ← hybG putative S‑transferase/hydrogenase 2 accessory protein
RA 3,139,685 C→A 6.7% intergenic (+92/+31) yghU → / ← hybG putative S‑transferase/hydrogenase 2 accessory protein
RA 3,140,351 C→T 6.4% R150H (CGC→CAC) ‡ hybE ← hydrogenase 2‑specific chaperone
RA 3,140,352 G→C 6.4% R150G (CGC→GGC) ‡ hybE ← hydrogenase 2‑specific chaperone
RA 3,140,353 A→G 6.3% R149R (CGT→CGC)  hybE ← hydrogenase 2‑specific chaperone
RA 3,180,223 T→A 13.8% Y160* (TAT→TAA)  ygiB → DUF1190 family protein
RA 3,180,694 A→G 6.8% T92A (ACG→GCG)  ygiC → ATP‑Grasp family ATPase
RA 3,180,698 A→G 6.6% H93R (CAC→CGC)  ygiC → ATP‑Grasp family ATPase
RA 3,183,345:1 +T 8.5% intergenic (+22/+468) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,183,350 Δ1 bp 8.1% intergenic (+27/+463) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,233,155 A→T 5.4% K497N (AAA→AAT)  fadH → 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
RA 3,238,466 A→G 5.1% intergenic (+169/‑114) ygjR → / → alx putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator
RA 3,250,989 G→C 11.4% intergenic (+35/‑35) yqjF → / → yqjG putative quinol oxidase subunit/putative S‑transferase
RA 3,250,990 A→T 10.0% intergenic (+36/‑34) yqjF → / → yqjG putative quinol oxidase subunit/putative S‑transferase
RA 3,250,991 A→T 11.1% intergenic (+37/‑33) yqjF → / → yqjG putative quinol oxidase subunit/putative S‑transferase
RA 3,250,992 G→C 9.8% intergenic (+38/‑32) yqjF → / → yqjG putative quinol oxidase subunit/putative S‑transferase
RA 3,270,193 C→T 16.4% intergenic (+591/+23) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,270,194 G→T 14.1% intergenic (+592/+22) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,270,195 A→C 25.0% intergenic (+593/+21) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,270,196 A→G 12.3% intergenic (+594/+20) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,288,032 C→A 11.0% intergenic (+22/‑58) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,288,033 T→G 10.5% intergenic (+23/‑57) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,308,160 T→C 5.6% A255A (GCA→GCG)  nlpI ← lipoprotein involved in osmotic sensitivity and filamentation
RA 3,309,009 C→T 8.5% intergenic (‑85/+24) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,309,012 A→G 7.4% intergenic (‑88/+21) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,310,968 G→C 6.6% T67T (ACC→ACG)  pnp ← polynucleotide phosphorylase/polyadenylase
RA 3,318,159 A→T 7.5% intergenic (‑153/+54) rimP ← / ← metY ribosome maturation factor for 30S subunits/tRNA‑Met
RA 3,329,107 G→A 5.9% A49T (GCT→ACT)  dacB → D‑alanyl‑D‑alanine carboxypeptidase
RA 3,331,979 T→C 12.5% T253A (ACG→GCG)  yhbE ← EamA family inner membrane putative transporter
RA 3,331,983 G→C 12.5% I251M (ATC→ATG)  yhbE ← EamA family inner membrane putative transporter
RA 3,331,987 G→A 11.3% A250V (GCG→GTG)  yhbE ← EamA family inner membrane putative transporter
RA 3,334,704 G→C 9.6% intergenic (+23/‑205) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,334,705 C→T 7.1% intergenic (+24/‑204) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,335,170 A→G 5.9% T88A (ACT→GCT)  sfsB → malPQ operon transcriptional activator
RA 3,368,173 C→T 6.6% P116L (CCG→CTG)  yhcG → DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily
RA 3,368,180 A→G 6.9% T118T (ACA→ACG)  yhcG → DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily
RA 3,368,181 C→G 6.9% P119A (CCG→GCG) ‡ yhcG → DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily
RA 3,368,182 C→T 6.7% P119L (CCG→CTG) ‡ yhcG → DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily
RA 3,368,189 A→G 7.1% A121A (GCA→GCG)  yhcG → DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily
RA 3,368,220 C→G 7.8% L132V (CTG→GTG)  yhcG → DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily
JC JC 3,411,013 Δ1 bp :: IS186 (+) +8 bp :: Δ2 bp 100% coding (734‑741/966 nt) dusB → tRNA‑dihydrouridine synthase B
RA 3,423,420 T→C 6.1% intergenic (+226/+3) yhdZ → / ← rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA 3,439,588 G→C 8.7% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,439,589 G→C 8.5% intergenic (‑80/+27) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,525,486 C→A 5.6% intergenic (+63/+103) mrcA → / ← nudE penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase
RA 3,525,487 G→C 5.6% intergenic (+64/+102) mrcA → / ← nudE penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase
RA 3,525,492 G→T 5.6% intergenic (+69/+97) mrcA → / ← nudE penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase
RA 3,525,493 A→C 5.6% intergenic (+70/+96) mrcA → / ← nudE penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase
RA 3,525,498 G→C 5.9% intergenic (+75/+91) mrcA → / ← nudE penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase
RA 3,525,499 T→G 6.0% intergenic (+76/+90) mrcA → / ← nudE penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase
RA 3,548,068 T→G 5.0% E668A (GAG→GCG)  malQ ← 4‑alpha‑glucanotransferase (amylomaltase)
RA 3,548,074 G→T 5.5% T666K (ACG→AAG)  malQ ← 4‑alpha‑glucanotransferase (amylomaltase)
RA 3,548,089 C→A 5.8% R661L (CGC→CTC)  malQ ← 4‑alpha‑glucanotransferase (amylomaltase)
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,564,354 A→G 5.1% L743P (CTG→CCG)  glgP ← glycogen phosphorylase
RA 3,589,997 A→C 7.4% F11V (TTC→GTC)  ugpE ← sn‑glycerol‑3‑phosphate ABC transporter permease
RA 3,589,998 T→G 6.4% I10I (ATA→ATC)  ugpE ← sn‑glycerol‑3‑phosphate ABC transporter permease
RA 3,590,001 C→A 7.2% T9T (ACG→ACT) ‡ ugpE ← sn‑glycerol‑3‑phosphate ABC transporter permease
RA 3,590,002 G→T 6.3% T9K (ACG→AAG) ‡ ugpE ← sn‑glycerol‑3‑phosphate ABC transporter permease
RA 3,616,929 T→A 8.7% F250I (TTT→ATT)  nikC → nickel ABC transporter permease
RA 3,636,748 G→A 6.1% G221G (GGC→GGT)  yhiN ← putative oxidoreductase
RA 3,644,153 G→A 6.4% H344Y (CAC→TAC)  prlC ← oligopeptidase A
RA 3,657,599 T→A 6.6% intergenic (+32/+387) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,601 G→C 6.4% intergenic (+34/+385) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,667,459 A→C 5.3% V41G (GTC→GGC)  gadA ← glutamate decarboxylase A, PLP‑dependent
RA 3,667,463 C→G 5.3% D40H (GAT→CAT)  gadA ← glutamate decarboxylase A, PLP‑dependent
RA 3,667,467 G→T 5.3% R38R (CGC→CGA)  gadA ← glutamate decarboxylase A, PLP‑dependent
RA 3,708,595 G→A 7.9% intergenic (‑890/+21) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,708,596 T→A 10.3% intergenic (‑891/+20) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,708,597 T→C 7.9% intergenic (‑892/+19) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,716,507 A→G 6.0% intergenic (‑113/‑40) bisC ← / → yiaD biotin sulfoxide reductase/multicopy suppressor of bamB; outer membrane lipoprotein
RA 3,716,508 A→T 6.0% intergenic (‑114/‑39) bisC ← / → yiaD biotin sulfoxide reductase/multicopy suppressor of bamB; outer membrane lipoprotein
RA 3,716,509 C→T 6.3% intergenic (‑115/‑38) bisC ← / → yiaD biotin sulfoxide reductase/multicopy suppressor of bamB; outer membrane lipoprotein
RA 3,733,202 C→A 5.7% A334A (GCC→GCA)  xylG → D‑xylose ABC transporter dual domain ATPase
RA 3,736,211 G→A 6.1% intergenic (+54/+142) xylR → / ← bax xylose divergent operon transcriptional activator/putative glucosaminidase
RA 3,736,212 C→A 6.1% intergenic (+55/+141) xylR → / ← bax xylose divergent operon transcriptional activator/putative glucosaminidase
RA 3,736,218 G→T 6.0% intergenic (+61/+135) xylR → / ← bax xylose divergent operon transcriptional activator/putative glucosaminidase
RA 3,736,219 A→C 7.7% intergenic (+62/+134) xylR → / ← bax xylose divergent operon transcriptional activator/putative glucosaminidase
RA 3,756,563 A→G 9.4% intergenic (‑52/+113) aldB ← / ← yiaY aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA 3,756,564 T→A 10.2% intergenic (‑53/+112) aldB ← / ← yiaY aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA 3,756,565 C→T 9.4% intergenic (‑54/+111) aldB ← / ← yiaY aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA 3,771,187 G→C 7.5% P65A (CCT→GCT)  yibH ← putative membrane fusion protein (MFP) component of efflux pump
RA 3,771,192 G→C 7.0% A63G (GCG→GGG)  yibH ← putative membrane fusion protein (MFP) component of efflux pump
RA 3,771,581 A→G 5.7% L55P (CTG→CCG)  yibI ← DUF3302 family inner membrane protein
RA 3,776,010 T→G 8.4% L147V (TTA→GTA) ‡ mtlR → mannitol operon repressor
RA 3,776,012 A→G 6.5% L147L (TTA→TTG) ‡ mtlR → mannitol operon repressor
RA 3,776,013 C→G 6.3% P148A (CCA→GCA)  mtlR → mannitol operon repressor
RA 3,787,619 Δ1 bp 11.8% coding (782/1260 nt) envC → activator of AmiB,C murein hydrolases, septal ring factor
RA 3,787,624:1 +A 11.1% coding (787/1260 nt) envC → activator of AmiB,C murein hydrolases, septal ring factor
RA 3,790,303 A→T 6.3% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,809,660 C→T 6.8% A374V (GCC→GTC)  waaA → 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)
RA 3,814,164 G→A 6.4% G78D (GGT→GAT)  dut → deoxyuridinetriphosphatase
RA 3,814,167 T→C 6.5% I79T (ATC→ACC)  dut → deoxyuridinetriphosphatase
RA 3,817,705 A→T 6.6% intergenic (+166/‑55) yicC → / → dinD UPF0701 family protein/DNA damage‑inducible protein
RA 3,817,708 A→T 6.2% intergenic (+169/‑52) yicC → / → dinD UPF0701 family protein/DNA damage‑inducible protein
RA 3,825,918 T→C 5.1% L237L (TTA→CTA)  recG → ATP‑dependent DNA helicase
RA 3,829,443 A→G 5.7% M167V (ATG→GTG)  xanP → xanthine permease
RA 3,832,188 A→T 9.0% intergenic (+22/+31) yicH → / ← yicI putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
RA 3,832,191 C→G 7.8% intergenic (+25/+28) yicH → / ← yicI putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
RA 3,832,194 A→T 7.4% intergenic (+28/+25) yicH → / ← yicI putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase
RA 3,863,040 Δ1 bp 5.3% pseudogene (564/1617 nt) glvC ← pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component
RA 3,873,139 C→T 5.2% T158T (ACG→ACA)  dgoA ← 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase
RA 3,877,601 A→C 7.2% intergenic (‑136/+104) yidB ← / ← gyrB DUF937 family protein/DNA gyrase, subunit B
RA 3,885,293 A→C 7.9% N73T (AAC→ACC)  yidC → membrane protein insertase
RA 3,885,298 C→A 8.2% R75S (CGT→AGT) ‡ yidC → membrane protein insertase
RA 3,885,299 G→C 7.5% R75P (CGT→CCT) ‡ yidC → membrane protein insertase
RA 3,885,300 T→G 9.0% R75R (CGT→CGG) ‡ yidC → membrane protein insertase
RA 3,885,305 G→T 7.5% G77V (GGT→GTT)  yidC → membrane protein insertase
RA 3,886,757 T→C 5.4% intergenic (+35/‑71) yidC → / → mnmE membrane protein insertase/tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase
JC JC 3,890,075 IS5 (–) +4 bp 100% coding (1346‑1349/1416 nt) tnaA → tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
RA 3,896,296 G→A 6.3% A105V (GCG→GTG)  adeP ← adenine permease, high affinity; adenine:H+ symporter
RA 3,896,350 G→T 6.0% A87E (GCA→GAA) ‡ adeP ← adenine permease, high affinity; adenine:H+ symporter
RA 3,896,351 C→G 6.6% A87P (GCA→CCA) ‡ adeP ← adenine permease, high affinity; adenine:H+ symporter
RA 3,896,352 A→C 6.5% V86V (GTT→GTG)  adeP ← adenine permease, high affinity; adenine:H+ symporter
RA 3,900,318 C→T 5.4% R87H (CGC→CAC)  yieL ← putative xylanase
RA 3,906,826 T→C 9.2% intergenic (‑259/+27) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,906,828 A→T 8.2% intergenic (‑261/+25) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,906,830 G→A 8.5% intergenic (‑263/+23) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,910,326 G→A 8.5% L25L (CTG→TTG)  pstC ← phosphate ABC transporter permease
RA 3,919,045 A→G 5.2% R271R (CGT→CGC)  atpA ← F1 sector of membrane‑bound ATP synthase, alpha subunit
RA 3,959,515 T→A 14.2% intergenic (+70/+17) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,970,657 T→C 5.2% D175D (GAT→GAC)  wecB → UDP‑N‑acetyl glucosamine‑2‑epimerase
RA 3,971,996 T→A 9.1% L246Q (CTG→CAG)  wecC → UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
RA 3,985,903 T→C 6.0% K35K (AAA→AAG)  aslA ← putative Ser‑type periplasmic non‑aryl sulfatase
RA 4,019,747 A→T 6.9% K42* (AAA→TAA)  ubiJ → aerobic ubiquinone synthesis protein, SCP2 family protein
RA 4,028,482 T→G 9.5% A97A (GCA→GCC) ‡ fadA ← 3‑ketoacyl‑CoA thiolase (thiolase I)
RA 4,028,483 G→C 8.1% A97G (GCA→GGA) ‡ fadA ← 3‑ketoacyl‑CoA thiolase (thiolase I)
RA 4,028,484 C→A 8.2% A97S (GCA→TCA) ‡ fadA ← 3‑ketoacyl‑CoA thiolase (thiolase I)
RA 4,056,038 T→G 11.1% D101A (GAC→GCC) ‡ glnL ← sensory histidine kinase in two‑component regulatory system with GlnG
RA 4,056,039 C→A 9.9% D101Y (GAC→TAC) ‡ glnL ← sensory histidine kinase in two‑component regulatory system with GlnG
RA 4,060,261 G→T 8.3% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 8.3% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,069,972 C→T 8.3% A144T (GCA→ACA)  yihR ← putative sulphoquinovose mutarotase
RA 4,076,598 G→C 12.5% P151P (CCG→CCC)  yihY → BrkB family putative transporter, inner membrane protein
RA 4,114,593 C→A 6.0% P329P (CCG→CCT)  glpX ← fructose 1,6‑bisphosphatase II
RA 4,159,160 T→A 77.2% L224Q (CTG→CAG)  oxyR → oxidative and nitrosative stress transcriptional regulator
RA 4,165,227 A→G 5.1% Q530R (CAG→CGG)  btuB → vitamin B12/cobalamin outer membrane transporter
JC 4,186,098 +TCCGCTGGT 89.6% coding (749/4224 nt) rpoC → RNA polymerase, beta prime subunit
RA 4,213,182 A→T 6.4% intergenic (+23/‑52) rrfE → / → yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
RA 4,218,885 A→G 6.6% E97G (GAG→GGG)  aceK → isocitrate dehydrogenase kinase/phosphatase
RA 4,223,142 T→C 8.1% K163E (AAA→GAA)  iclR ← transcriptional repressor
RA 4,263,308 C→G 5.7% Q308H (CAG→CAC)  qorA ← quinone oxidoreductase, NADPH‑dependent
RA 4,283,232 A→C 11.6% intergenic (‑157/+21) yjcF ← / ← actP pentapeptide repeats protein/acetate transporter
RA 4,289,094 T→A 5.8% I444N (ATT→AAT)  nrfA → nitrite reductase, formate‑dependent, cytochrome
RA 4,294,921 G→T 7.0% V147V (GTG→GTT)  gltP → glutamate/aspartate:proton symporter
RA 4,296,060 C→T 33.4% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,868 A→G 5.3% Y86Y (TAT→TAC)  yjcO ← Sel1 family TPR‑like repeat protein
RA 4,366,854 T→G 7.5% intergenic (‑81/+37) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,366,855 C→A 8.5% intergenic (‑82/+36) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,372,359 T→C 6.0% R445R (CGT→CGC)  groL → Cpn60 chaperonin GroEL, large subunit of GroESL
RA 4,376,280 G→A 9.0% intergenic (+15/‑37) efp → / → ecnA polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA 4,376,291 T→C 9.2% intergenic (+26/‑26) efp → / → ecnA polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA 4,378,857 G→A 7.7% R30C (CGC→TGC)  ampC ← penicillin‑binding protein; beta‑lactamase, intrinsically weak
RA 4,378,858 A→T 7.3% H29Q (CAT→CAA) ‡ ampC ← penicillin‑binding protein; beta‑lactamase, intrinsically weak
RA 4,378,859 T→C 7.9% H29R (CAT→CGT) ‡ ampC ← penicillin‑binding protein; beta‑lactamase, intrinsically weak
RA 4,390,401 C→A 9.7% intergenic (‑41/+56) psd ← / ← rsgA phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A
RA 4,390,403 A→G 9.4% intergenic (‑43/+54) psd ← / ← rsgA phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A
RA 4,390,404 C→T 9.3% intergenic (‑44/+53) psd ← / ← rsgA phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A
RA 4,390,406 T→G 8.8% intergenic (‑46/+51) psd ← / ← rsgA phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A
RA 4,415,970 A→C 6.6% intergenic (+70/+47) aidB → / ← yjfN DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein
RA 4,444,193 A→C 10.3% T28P (ACC→CCC)  tamB → translocation and assembly module for autotransporter export, inner membrane subunit
RA 4,450,962 T→G 19.6% intergenic (+44/‑96) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,963 C→A 12.0% intergenic (+45/‑95) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,969 G→T 10.2% intergenic (+51/‑89) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,970 C→T 9.2% intergenic (+52/‑88) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,457,197 A→C 5.7% intergenic (+39/+117) mpl → / ← yjgA UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein
RA 4,472,434 G→A 6.9% R34* (CGA→TGA)  pyrL ← pyrBI operon leader peptide
RA 4,472,437 T→C 7.0% N33D (AAT→GAT)  pyrL ← pyrBI operon leader peptide
RA 4,497,292 A→C 5.5% pseudogene (618/1266 nt) intB → pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase
RA 4,508,674 T→C 5.7% intergenic (‑57/+2) insI1 ← / ← insM IS30 transposase/pseudogene, IS600 transposase;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related
RA 4,511,688 A→C 16.1% C243G (TGC→GGC)  fecD ← ferric citrate ABC transporter permease
RA 4,513,106 C→G 6.3% A102P (GCG→CCG)  fecC ← ferric citrate ABC transporter permease
RA 4,513,111 C→G 6.3% G100A (GGC→GCC)  fecC ← ferric citrate ABC transporter permease
RA 4,514,335 A→T 9.0% intergenic (‑27/+18) fecB ← / ← fecA ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein
RA 4,514,336 A→T 10.1% intergenic (‑28/+17) fecB ← / ← fecA ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein
RA 4,520,500 Δ1 bp 7.1% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 7.0% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,537,639 T→G 6.8% intergenic (‑45/+20) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,537,643 C→A 5.8% intergenic (‑49/+16) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,537,644 C→A 5.8% intergenic (‑50/+15) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,540,149 C→G 5.6% intergenic (‑648/‑808) nanC ← / → fimB N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA
RA 4,540,153 G→T 5.5% intergenic (‑652/‑804) nanC ← / → fimB N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA
RA 4,549,866 T→G 5.7% intergenic (+156/+87) fimH → / ← gntP minor component of type 1 fimbriae/fructuronate transporter
RA 4,549,872 G→C 6.7% intergenic (+162/+81) fimH → / ← gntP minor component of type 1 fimbriae/fructuronate transporter
RA 4,549,873 A→C 6.6% intergenic (+163/+80) fimH → / ← gntP minor component of type 1 fimbriae/fructuronate transporter
RA 4,592,203 A→G 6.0% S183G (AGC→GGC)  tsr → methyl‑accepting chemotaxis protein I, serine sensor receptor
RA 4,616,857 C→G 6.1% R70P (CGC→CCC)  yjjI ← DUF3029 family protein, putative glycine radical enzyme
RA 4,632,165 T→C 7.2% L478P (CTG→CCG)  slt → lytic murein transglycosylase, soluble

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2947436 2947630 195 25 [24] [24] 25 [metZ]–[metV] [metZ],metW,[metV]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2134456 (0.940)3 (0.050) 3/266 NT 5.4% coding (164/219 nt) yaaY uncharacterized protein
?NC_000913 = 21381 52 (0.910)coding (201/219 nt) yaaY uncharacterized protein
* ? NC_000913 = 19640661 (1.030)4 (0.070) 4/268 NT 6.3% coding (730/858 nt) cdsA CDP‑diglyceride synthase
?NC_000913 = 196444 59 (1.020)coding (768/858 nt) cdsA CDP‑diglyceride synthase
* ? NC_000913 212491 =79 (1.330)7 (0.120) 5/266 NT 8.5% coding (161/1299 nt) tilS tRNA(Ile)‑lysidine synthetase
?NC_000913 212620 = 74 (1.290)coding (290/1299 nt) tilS tRNA(Ile)‑lysidine synthetase
* ? NC_000913 274620 =NA (NA)4 (0.070) 4/258 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 35461254 (0.910)5 (0.090) 4/262 NT 8.2% noncoding (14/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 354646 61 (1.080)noncoding (48/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 42970252 (0.870)4 (0.070) 3/256 NT 6.8% coding (198/972 nt) secF SecYEG protein translocase auxillary subunit
?NC_000913 = 429734 61 (1.110)coding (230/972 nt) secF SecYEG protein translocase auxillary subunit
* ? NC_000913 = 61075749 (0.820)4 (0.070) 3/262 NT 7.7% coding (1738/2241 nt) fepA ferrienterobactin outer membrane transporter
?NC_000913 = 610779 49 (0.870)coding (1716/2241 nt) fepA ferrienterobactin outer membrane transporter
* ? NC_000913 743425 =53 (0.890)3 (0.050) 3/254 NT 6.7% coding (599/744 nt) ybgI NIF3 family metal‑binding protein
?NC_000913 743523 = 35 (0.640)coding (697/744 nt) ybgI NIF3 family metal‑binding protein
* ? NC_000913 = 78125351 (0.860)5 (0.090) 3/268 NT 8.7% intergenic (+31/‑116) lysY/lysZ tRNA‑Lys/tRNA‑Lys
?NC_000913 = 781308 55 (0.950)intergenic (+86/‑61) lysY/lysZ tRNA‑Lys/tRNA‑Lys
* ? NC_000913 946720 =56 (0.940)3 (0.050) 3/264 NT 5.1% coding (850/1149 nt) ycaD putative MFS transporter, inner membrane protein
?NC_000913 946769 = 57 (1.000)coding (899/1149 nt) ycaD putative MFS transporter, inner membrane protein
* ? NC_000913 = 1049984NA (NA)3 (0.050) 3/258 NT 16.7% noncoding (207/768 nt) IS1 repeat region
?NC_000913 = 3583540 16 (0.270)noncoding (113/768 nt) IS1 repeat region
* ? NC_000913 1100121 =52 (0.870)5 (0.090) 5/268 NT 9.6% coding (482/555 nt) ycdY redox enzyme maturation protein (REMP) chaperone for YcdX
?NC_000913 1100158 = 44 (0.760)coding (519/555 nt) ycdY redox enzyme maturation protein (REMP) chaperone for YcdX
* ? NC_000913 = 121372862 (1.040)7 (0.120) 5/262 NT 10.2% coding (332/732 nt) bluR repressor of blue light‑responsive genes
?NC_000913 = 1213735 64 (1.130)coding (325/732 nt) bluR repressor of blue light‑responsive genes
* ? NC_000913 1218916 =69 (1.160)3 (0.060) 3/248 NT 5.3% intergenic (+65/‑67) ycgG/ymgF putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/inner membrane division septum protein
?NC_000913 1218997 = 45 (0.840)coding (15/219 nt) ymgF inner membrane division septum protein
* ? NC_000913 1237209 =54 (0.910)3 (0.050) 3/266 NT 5.1% coding (33/1533 nt) ycgB SpoVR family stationary phase protein
?NC_000913 1237305 = 59 (1.030)intergenic (‑64/‑266) ycgB/dadA SpoVR family stationary phase protein/D‑amino acid dehydrogenase
* ? NC_000913 = 129018558 (0.980)3 (0.050) 3/266 NT 5.1% intergenic (+35/‑57) rssA/rssB putative patatin‑like family phospholipase/PcnB‑degradosome interaction factor; response regulator
?NC_000913 = 1290226 55 (0.960)intergenic (+76/‑16) rssA/rssB putative patatin‑like family phospholipase/PcnB‑degradosome interaction factor; response regulator
* ? NC_000913 = 12994980 (0.000)77 (1.330) 61/268 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 1314673 =58 (0.980)3 (0.050) 3/258 NT 5.3% intergenic (+15/+45) ompW/yciE outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
?NC_000913 1314694 = 54 (0.970)intergenic (+36/+24) ompW/yciE outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
* ? NC_000913 = 134230845 (0.760)4 (0.070) 4/256 NT 7.6% coding (388/738 nt) pyrF orotidine‑5'‑phosphate decarboxylase
?NC_000913 = 1342349 55 (1.000)coding (429/738 nt) pyrF orotidine‑5'‑phosphate decarboxylase
* ? NC_000913 = 136081352 (0.870)3 (0.050) 3/258 NT 5.7% coding (96/1419 nt) puuA glutamate‑‑putrescine ligase
?NC_000913 = 1360843 51 (0.920)coding (66/1419 nt) puuA glutamate‑‑putrescine ligase
* ? NC_000913 1396531 =NA (NA)5 (0.090) 4/264 NT NA noncoding (488/1195 nt) IS5 repeat region
?NC_000913 = 1428264 NA (NA)noncoding (531/1196 nt) IS5 repeat region
* ? NC_000913 = 141672252 (0.870)3 (0.050) 3/268 NT 5.2% coding (665/2601 nt) recE Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease
?NC_000913 = 1416753 59 (1.020)coding (634/2601 nt) recE Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease
* ? NC_000913 1535684 =53 (0.890)3 (0.050) 3/266 NT 5.7% coding (175/894 nt) yddE PhzC‑PhzF family protein
?NC_000913 1535707 = 49 (0.860)coding (152/894 nt) yddE PhzC‑PhzF family protein
* ? NC_000913 = 163746153 (0.890)4 (0.070) 3/262 NT 7.8% intergenic (+4/+148) ydfO/gnsB Qin prophage; uncharacterized protein/Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts)
?NC_000913 = 1637499 44 (0.780)intergenic (+42/+110) ydfO/gnsB Qin prophage; uncharacterized protein/Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts)
* ? NC_000913 1661849 =53 (0.890)4 (0.070) 3/260 NT 7.5% coding (1294/2424 nt) ynfF S‑ and N‑oxide reductase, A subunit, periplasmic
?NC_000913 1661896 = 49 (0.880)coding (1341/2424 nt) ynfF S‑ and N‑oxide reductase, A subunit, periplasmic
* ? NC_000913 1742144 =52 (0.870)6 (0.110) 4/256 NT 11.2% coding (732/1149 nt) cfa cyclopropane fatty acyl phospholipid synthase, SAM‑dependent
?NC_000913 1742183 = 47 (0.850)coding (771/1149 nt) cfa cyclopropane fatty acyl phospholipid synthase, SAM‑dependent
* ? NC_000913 2001486 =57 (0.960)4 (0.070) 3/266 NT 6.8% coding (304/720 nt) fliA RNA polymerase, sigma 28 (sigma F) factor
?NC_000913 2001526 = 54 (0.940)coding (264/720 nt) fliA RNA polymerase, sigma 28 (sigma F) factor
* ? NC_000913 2042116 =65 (1.090)4 (0.070) 4/256 NT 6.4% intergenic (+91/‑252) zinT/yodB zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog
?NC_000913 2042149 = 56 (1.020)intergenic (+124/‑219) zinT/yodB zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog
* ? NC_000913 2248677 =69 (1.160)4 (0.070) 3/262 NT 6.2% intergenic (‑145/+60) lysP/yeiE lysine transporter/putative DNA‑binding transcriptional regulator
?NC_000913 2248722 = 55 (0.970)intergenic (‑190/+15) lysP/yeiE lysine transporter/putative DNA‑binding transcriptional regulator
* ? NC_000913 2258692 =43 (0.720)3 (0.050) 3/268 NT 6.8% coding (605/942 nt) psuK pseudouridine kinase
?NC_000913 2258736 = 41 (0.710)coding (561/942 nt) psuK pseudouridine kinase
* ? NC_000913 = 233465866 (1.110)4 (0.070) 4/266 NT 6.0% coding (302/624 nt) yfaT DUF1175 family protein, putative host defense protein
?NC_000913 = 2334709 62 (1.080)coding (251/624 nt) yfaT DUF1175 family protein, putative host defense protein
* ? NC_000913 2505807 =44 (0.740)3 (0.050) 3/262 NT 6.3% coding (826/1086 nt) ypdF Xaa‑Pro aminopeptidase
?NC_000913 2505850 = 47 (0.830)coding (783/1086 nt) ypdF Xaa‑Pro aminopeptidase
* ? NC_000913 2544103 =51 (0.860)3 (0.050) 3/264 NT 5.7% coding (521/792 nt) ucpA furfural resistance protein, putative short‑chain oxidoreductase
?NC_000913 2544165 = 51 (0.900)coding (459/792 nt) ucpA furfural resistance protein, putative short‑chain oxidoreductase
* ? NC_000913 2618582 =76 (1.280)4 (0.070) 3/268 NT 5.2% coding (195/702 nt) hda ATPase regulatory factor involved in DnaA inactivation
?NC_000913 2618627 = 71 (1.230)coding (150/702 nt) hda ATPase regulatory factor involved in DnaA inactivation
* ? NC_000913 2645953 =53 (0.890)4 (0.070) 3/266 NT 7.5% coding (1373/2313 nt) pbpC penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein
?NC_000913 2645984 = 48 (0.840)coding (1342/2313 nt) pbpC penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein
* ? NC_000913 2677185 =51 (0.860)3 (0.050) 3/272 NT 5.6% coding (1177/1512 nt) yphE putative sugar ABC transporter ATPase
?NC_000913 2677230 = 51 (0.870)coding (1132/1512 nt) yphE putative sugar ABC transporter ATPase
* ? NC_000913 2729443 =38 (0.640)5 (0.090) 3/256 NT 13.7% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 2729485 = 28 (0.510)intergenic (‑41/+131) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
* ? NC_000913 2819836 =62 (1.040)5 (0.090) 3/256 NT 8.4% coding (2176/2631 nt) alaS alanyl‑tRNA synthetase
?NC_000913 2819907 = 52 (0.940)coding (2105/2631 nt) alaS alanyl‑tRNA synthetase
* ? NC_000913 = 281984555 (0.930)3 (0.050) 3/256 NT 5.5% coding (2167/2631 nt) alaS alanyl‑tRNA synthetase
?NC_000913 = 2819896 52 (0.940)coding (2116/2631 nt) alaS alanyl‑tRNA synthetase
* ? NC_000913 2900520 =49 (0.820)3 (0.050) 3/254 NT 6.7% intergenic (‑247/‑72) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
?NC_000913 2900560 = 39 (0.710)intergenic (‑287/‑32) ygcW/yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
* ? NC_000913 = 333210358 (0.980)4 (0.070) 3/264 NT 6.9% coding (633/966 nt) yhbE EamA family inner membrane putative transporter
?NC_000913 = 3332130 53 (0.930)coding (606/966 nt) yhbE EamA family inner membrane putative transporter
* ? NC_000913 3470277 =NA (NA)4 (0.070) 3/262 NT NA coding (1053/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 3470311 = NA (NA)coding (1019/1185 nt) tufA translation elongation factor EF‑Tu 1
* ? NC_000913 3824439 =74 (1.240)4 (0.070) 4/264 NT 5.5% coding (2040/2109 nt) spoT bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
?NC_000913 3824478 = 66 (1.160)coding (2079/2109 nt) spoT bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
* ? NC_000913 3943544 =6 (0.100)7 (0.130) 4/254 NT 17.2% intergenic (+34/‑160) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 4168521 = 62 (1.130)intergenic (+74/‑120) gltT/rrlB tRNA‑Glu/23S ribosomal RNA of rrnB operon
* ? NC_000913 = 394366120 (0.340)6 (0.100) 5/272 NT 28.8% intergenic (+151/‑43) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 3943701 10 (0.170)intergenic (+191/‑3) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
* ? NC_000913 3998035 =41 (0.690)6 (0.100) 3/272 NT 11.7% coding (53/2163 nt) uvrD DNA‑dependent ATPase I and helicase II
?NC_000913 3998080 = 50 (0.850)coding (98/2163 nt) uvrD DNA‑dependent ATPase I and helicase II
* ? NC_000913 4020306 =78 (1.310)4 (0.070) 3/268 NT 5.1% coding (81/1641 nt) ubiB regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase
?NC_000913 4020348 = 72 (1.250)coding (123/1641 nt) ubiB regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase
* ? NC_000913 = 402053549 (0.820)3 (0.050) 3/262 NT 6.2% coding (310/1641 nt) ubiB regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase
?NC_000913 = 4020568 45 (0.800)coding (343/1641 nt) ubiB regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase
* ? NC_000913 4283517 =57 (0.960)3 (0.050) 3/262 NT 5.6% coding (1386/1650 nt) actP acetate transporter
?NC_000913 4283593 = 48 (0.850)coding (1310/1650 nt) actP acetate transporter
* ? NC_000913 4542682 =50 (0.840)8 (0.140) 7/258 NT 15.7% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 39 (0.700)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 454269049 (0.820)5 (0.090) 4/258 NT 10.6% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 39 (0.700)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4545987 =54 (0.910)3 (0.050) 3/258 NT 5.7% coding (892/2637 nt) fimD fimbrial usher outer membrane porin protein; FimCD chaperone‑usher
?NC_000913 4546081 = 49 (0.880)coding (986/2637 nt) fimD fimbrial usher outer membrane porin protein; FimCD chaperone‑usher