Thu May 23 22:57:06 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o breseq_processes/67 -r /var/data/TCH1516_HM_ALE_referencePlusProkka_Jan2019.gbk /var/alemutpipe-outputs/good/SNFM_15_40_1_S213_S1991_L006_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_15_40_1_S213_S1991_L006_R2_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_15_40_1_S213_S1991_L008_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_15_40_1_S213_S1991_L008_R2_001.good.fq.gz