Sat May 25 11:34:57 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o breseq_processes/32 -r /var/data/TCH1516_HM_ALE_referencePlusProkka_Jan2019.gbk /var/alemutpipe-outputs/good/SNFR_19_14_0_S2393_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFR_19_14_0_S2393_L001_R2_001.good.fq.gz