Sat May 25 06:00:39 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o breseq_processes/11 -r /var/data/TCH1516_HM_ALE_referencePlusProkka_Jan2019.gbk /var/alemutpipe-outputs/good/SNFR_23_171_0_S171_S1997_L006_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFR_23_171_0_S171_S1997_L006_R2_001.good.fq.gz /var/alemutpipe-outputs/good/SNFR_23_171_0_S171_S1997_L008_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFR_23_171_0_S171_S1997_L008_R2_001.good.fq.gz