Mon Oct  7 23:48:21 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o breseq_processes/5 -r /var/data/USA300TCH1516_ALE.gbk /var/alemutpipe-outputs/good/SNFM_19_18_0_S230_S1990_L006_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_19_18_0_S230_S1990_L006_R2_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_19_18_0_S230_S1990_L008_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_19_18_0_S230_S1990_L008_R2_001.good.fq.gz