Tue Oct  8 01:46:59 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o breseq_processes/18 -r /var/data/USA300TCH1516_ALE.gbk /var/alemutpipe-outputs/good/SNFM_19_74_1_S210_S1993_L006_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_19_74_1_S210_S1993_L006_R2_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_19_74_1_S210_S1993_L008_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFM_19_74_1_S210_S1993_L008_R2_001.good.fq.gz