Fri Oct 26 17:22:14 2018

breseq -p -j 1 -o SNFM-CP000730_gene_names_07072017gbk--S_aureus_USA300_TCH1516/breseq/SNFM_1_15_0_S199_S1996_L008 -r /Users/u01_2018/Documents/U01_ALE_Runs_Data/Re_rerun/CP000730_gene_names_07072017.gbk /Users/u01_2018/Documents/U01_ALE_Runs_Data/Re_rerun/good/SNFM_1_15_0_S199_S1996_L008_R1_001.good.fq.gz /Users/u01_2018/Documents/U01_ALE_Runs_Data/Re_rerun/good/SNFM_1_15_0_S199_S1996_L008_R2_001.good.fq.gz