Tue Nov 13 22:00:47 2018

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o SNFR-CP000730_gene_names_07072017gbk--S_aureus_USA300_TCH1516/breseq/SNFR_23_59_0_S2402_L001 -r /var/data/CP000730_gene_names_07072017.gbk /var/alemutpipe-outputs/good/SNFR_23_59_0_S2402_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFR_23_59_0_S2402_L001_R2_001.good.fq.gz