Tue Jul 7 18:27:12 2015 breseq -p -j 8 --polymorphism-frequency-cutoff 0.05 -r NC_000913_3.gb -o 2-Gly-Redo 2-Gly-Redo_S17_L001_R1_001.fastq 2-Gly-Redo_S17_L001_R2_001.fastq