breseq  version 0.33.2  revision caddc01d3be9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	6,332	C→A	19.9%	R17R (CGG→CGT)	trmE ←	GTPase
RA	6,339	T→A	18.8%	Q15L (CAG→CTG)	trmE ←	GTPase
RA	6,346	T→G	17.9%	T13P (ACG→CCG)	trmE ←	GTPase
RA	6,351	A→G	16.4%	I11T (ATC→ACC)	trmE ←	GTPase
RA	26,837:1	+A	14.8%	intergenic (+33/+152)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	26,844	A→T	16.7%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	45,680	C→G	13.7%	intergenic (‑156/+47)	cadA‑I ← / ← PP_0042	cadmium translocating P‑type ATPase/hypothetical protein
RA	58,747	T→A	18.9%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	18.9%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	72,283	T→A	12.9%	D189V (GAC→GTC)	glyQ ←	glycine‑tRNA ligase subunit alpha
RA	86,240	G→T	21.0%	L160M (CTG→ATG)	PP_0075 ←	choline sulfate transporter
RA	86,245	A→C	20.9%	M158R (ATG→AGG)	PP_0075 ←	choline sulfate transporter
RA	94,007	G→A	8.9%	G102S (GGC→AGC)	trpI →	HTH‑type transcriptional regulator TrpI
RA	122,485	C→G	12.1%	L158F (TTG→TTC)	PP_0116 ←	putative lipoprotein
RA	126,115	A→G	11.3%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	11.2%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	132,463	G→A	11.4%	intergenic (+37/‑115)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,467	G→C	11.1%	intergenic (+41/‑111)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,471	T→C	11.1%	intergenic (+45/‑107)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	133,296	C→G	14.3%	P25R (CCG→CGG)	PP_0128 →	hypothetical protein
RA	141,137	T→A	10.2%	Q237L (CAG→CTG)	algB ←	alginate biosynthesis transcriptional regulator AlgB
RA	181,805	T→C	13.2%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	10.9%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	14.3%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	195,559	C→A	16.1%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	9.1%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	9.1%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	28.9%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	19.1%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	22.1%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	22.1%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	20.4%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	7.5%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	12.9%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	7.2%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	9.1%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	12.3%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	15.9%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	202,062	T→A	20.8%	L2523Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	203,674	T→C	16.7%	D3060D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	203,677	T→C	9.3%	G3061G (GGT→GGC)	PP_0168 →	putative surface adhesion protein
RA	203,740	C→G	11.7%	T3082T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	212,560	T→A	10.8%	V6022V (GTT→GTA)	PP_0168 →	putative surface adhesion protein
RA	213,354	T→A	20.9%	L6287Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	240,531	G→C	23.1%	A276P (GCC→CCC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	240,536	G→C	21.9%	G277G (GGG→GGC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	243,622	T→A	11.7%	K183N (AAA→AAT) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,623	T→A	11.8%	K183I (AAA→ATA) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	269,112	A→G	10.5%	L281P (CTG→CCG)	desA ←	delta‑9 fatty acid desaturase
RA	274,139	T→G	11.9%	K144T (AAG→ACG)	PP_0221 ←	methionine ABC transporter substrate‑binding protein
RA	322,135	G→A	25.9%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,142	T→C	22.2%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,163	C→T	12.5%	intergenic (+448/+10)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,067	C→A	17.2%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,070	T→G	17.1%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	348,673	C→T	17.4%	A186V (GCG→GTG)	PP_0288 →	oxalate/formate antiporter
RA	355,050	A→G	13.8%	V42A (GTC→GCC)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	365,816	A→C	9.8%	E27A (GAG→GCG) ‡	cdhR →	HTH‑type transcriptional regulator CdhR
RA	365,817	G→T	8.6%	E27D (GAG→GAT) ‡	cdhR →	HTH‑type transcriptional regulator CdhR
RA	382,128:1	+C	11.1%	coding (420/1626 nt)	PP_0317 ←	methyl‑accepting chemotaxis transducer
RA	382,134	Δ1 bp	10.8%	coding (414/1626 nt)	PP_0317 ←	methyl‑accepting chemotaxis transducer
RA	384,786	C→G	11.6%	R421G (CGC→GGC)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	384,790	A→T	11.6%	N422I (AAT→ATT)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	384,794	C→G	11.6%	A423A (GCC→GCG)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	413,107	C→G	11.0%	A686A (GCC→GCG)	glnE →	glutamate‑ammonia‑ligase adenylyltransferase
RA	417,375	C→T	18.8%	P361L (CCG→CTG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,378	A→G	19.9%	Q362R (CAG→CGG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	418,581	C→A	9.5%	L121M (CTG→ATG) ‡	PP_0345 →	heptose kinase WapP
RA	418,582	T→G	9.3%	L121R (CTG→CGG) ‡	PP_0345 →	heptose kinase WapP
RA	489,290	G→C	14.7%	R111G (CGC→GGC)	surA ←	peptidyl‑prolyl cis‑trans isomerase
RA	489,292	T→A	15.2%	Q110L (CAG→CTG)	surA ←	peptidyl‑prolyl cis‑trans isomerase
RA	489,294	G→C	14.7%	A109A (GCC→GCG)	surA ←	peptidyl‑prolyl cis‑trans isomerase
RA	495,966	G→C	18.5%	A24G (GCC→GGC)	PP_0408 ←	hypothetical protein
RA	495,969	A→T	17.0%	L23Q (CTG→CAG)	PP_0408 ←	hypothetical protein
RA	495,972	G→C	17.4%	A22G (GCC→GGC)	PP_0408 ←	hypothetical protein
RA	512,322	C→A	10.5%	I104I (ATC→ATA)	PP_0423 →	hypothetical protein
RA	538,399	C→T	14.6%	D258D (GAC→GAT)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	538,400	A→G	14.6%	I259V (ATC→GTC)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	550,552	C→G	12.0%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	557,335	Δ1 bp	21.7%	intergenic (+75/‑134)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	557,339:1	+A	23.3%	intergenic (+79/‑130)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	571,620	G→A	13.7%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,621	T→C	14.0%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	572,521	A→G	13.8%	I191T (ATC→ACC)	PP_0486 ←	GntR family transcriptional regulator
RA	572,528	C→T	14.3%	V189M (GTG→ATG)	PP_0486 ←	GntR family transcriptional regulator
RA	626,559	T→G	9.0%	K213Q (AAG→CAG)	dedA ←	inner membrane protein
RA	626,572	C→A	9.0%	L208L (CTG→CTT)	dedA ←	inner membrane protein
RA	638,745	A→T	15.9%	L16Q (CTG→CAG)	PP_0550 ←	hypothetical protein
RA	644,143	G→C	21.5%	R293G (CGC→GGC)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	644,144	G→C	23.9%	A292A (GCC→GCG)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	646,275	T→A	11.1%	intergenic (‑178/‑106)	PP_0556 ← / → acoR	acetoin catabolism protein/acetoin catabolism regulatory protein
RA	654,406	T→G	8.8%	K114Q (AAG→CAG)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	668,266	G→T	12.5%	F87L (TTC→TTA) ‡	PP_0571 ←	membrane protein
RA	668,267	A→C	12.1%	F87C (TTC→TGC) ‡	PP_0571 ←	membrane protein
RA	689,978	C→T	14.7%	R221H (CGC→CAC)	PP_0591 ←	adenosine deaminase
RA	689,981	A→G	14.7%	V220A (GTG→GCG)	PP_0591 ←	adenosine deaminase
RA	699,725	A→G	45.7%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	772,181	T→C	17.4%	intergenic (+39/‑160)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,182	T→G	13.8%	intergenic (+40/‑159)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,185	C→A	13.4%	intergenic (+43/‑156)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,186	G→A	13.3%	intergenic (+44/‑155)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	789,133	T→C	18.0%	L123P (CTG→CCG)	gdhA →	NADP‑dependent glutamate dehydrogenase
RA	799,844	T→A	15.6%	D211V (GAC→GTC)	ispB ←	octaprenyl diphosphate synthase
RA	819,244:1	+C	11.4%	coding (395/627 nt)	PP_0705 →	DNA‑3‑methyladenine glycosylase
RA	819,249	Δ1 bp	11.6%	coding (400/627 nt)	PP_0705 →	DNA‑3‑methyladenine glycosylase
RA	848,506	G→A	23.5%	L23F (CTT→TTT)	PP_0730 ←	hypothetical protein
RA	848,508	C→G	23.1%	R22P (CGG→CCG)	PP_0730 ←	hypothetical protein
RA	848,510	T→C	26.2%	K21K (AAA→AAG)	PP_0730 ←	hypothetical protein
RA	874,539:1	+T	9.3%	coding (115/840 nt)	PP_0759 →	hypothetical protein
RA	874,543	Δ1 bp	8.7%	coding (119/840 nt)	PP_0759 →	hypothetical protein
RA	876,015	G→T	14.3%	noncoding (108/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	895,213	G→C	9.3%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→A	9.3%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,222	G→C	8.8%	intergenic (+59/+5)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	939,922	Δ1 bp	10.3%	coding (5703/18933 nt)	PP_0806 ←	surface adhesion protein
RA	939,928:1	+C	10.0%	coding (5697/18933 nt)	PP_0806 ←	surface adhesion protein
RA	939,935	C→G	10.3%	G1897A (GGC→GCC)	PP_0806 ←	surface adhesion protein
RA	953,224	T→C	17.2%	A10A (GCT→GCC)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,232	A→G	14.0%	H13R (CAC→CGC) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,233	C→T	14.0%	H13H (CAC→CAT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	966,701	G→T	9.1%	R7S (CGC→AGC)	PP_0828 ←	membrane protein
RA	972,118	T→A	9.4%	L136Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	972,121	T→A	9.3%	L137Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	975,290	A→T	8.2%	intergenic (+136/+33)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	975,291	A→T	8.4%	intergenic (+137/+32)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	977,876	T→A	13.3%	intergenic (+39/‑141)	cysE → / → iscR	serine acetyltransferase/DNA‑binding transcriptional regulator IscR
RA	1,011,852	C→T	15.6%	T87T (ACC→ACT)	prfC →	peptide chain release factor 3
RA	1,013,231	A→T	25.9%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,237	C→A	24.1%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,238	A→T	25.0%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,244	G→C	22.2%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,245	G→C	22.3%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,251	A→T	24.2%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,252	T→G	28.0%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,258	A→T	31.1%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,014,899	G→A	10.0%	R449W (CGG→TGG)	PP_0875 ←	hypothetical protein
RA	1,031,922	T→A	10.6%	L5M (TTG→ATG) ‡	PP_0889 →	hypothetical protein
RA	1,031,923	T→A	10.0%	L5* (TTG→TAG) ‡	PP_0889 →	hypothetical protein
RA	1,039,265	G→C	10.5%	R45G (CGC→GGC)	PP_0897 ←	class 1 fumarate hydratase
RA	1,039,269	A→T	11.1%	A43A (GCT→GCA)	PP_0897 ←	class 1 fumarate hydratase
RA	1,039,273	G→C	11.2%	P42R (CCT→CGT)	PP_0897 ←	class 1 fumarate hydratase
RA	1,049,192	C→A	11.4%	L137L (CTG→CTT)	PP_0907 ←	RND transporter membrane fusion protein‑like protein
RA	1,070,241	G→A	7.9%	intergenic (+38/+106)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,242	G→T	9.2%	intergenic (+39/+105)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,265	G→C	27.3%	intergenic (+62/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,268	G→C	28.6%	intergenic (+65/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,073,563	A→G	12.1%	L433P (CTG→CCG)	gatA ←	glutamyl‑tRNA(Gln) amidotransferase subunit A
RA	1,073,568	C→T	14.2%	A431A (GCG→GCA)	gatA ←	glutamyl‑tRNA(Gln) amidotransferase subunit A
RA	1,078,306	C→G	12.9%	A54G (GCC→GGC)	maf →	septum formation protein
RA	1,078,309	C→G	12.9%	A55G (GCC→GGC)	maf →	septum formation protein
RA	1,143,873	T→C	7.8%	W335R (TGG→CGG)	arcD‑II →	arginine/ornithine antiporter
RA	1,145,439	C→T	15.6%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,446	G→A	15.1%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,447	T→C	15.2%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,454	A→G	17.7%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,148,799	G→T	16.3%	T151K (ACG→AAG)	PP_1007 ←	transmembrane sensor
RA	1,148,802	A→C	15.9%	L150R (CTT→CGT)	PP_1007 ←	transmembrane sensor
RA	1,156,327	T→C	19.1%	intergenic (+24/‑192)	PP_1013 → / → yihS	sensor histidine kinase/aldose‑ketose isomerase
RA	1,173,361	G→A	9.4%	A224V (GCG→GTG)	PP_1028 ←	LysR family transcriptional regulator
RA	1,183,462	A→T	8.5%	I310N (ATT→AAT)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,184,574	A→G	15.4%	intergenic (‑184/‑228)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,591	G→C	23.9%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,594	G→C	22.7%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,193,934	T→A	15.7%	L23M (TTG→ATG) ‡	uxpA →	lipoprotein UxpA
RA	1,193,935	T→A	15.6%	L23* (TTG→TAG) ‡	uxpA →	lipoprotein UxpA
RA	1,195,101	G→C	10.8%	A412P (GCA→CCA)	uxpA →	lipoprotein UxpA
RA	1,202,863	G→T	9.8%	R229L (CGG→CTG)	xcpY →	type II secretion pathway protein XcpY
RA	1,241,996	T→G	18.8%	intergenic (+55/+3)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,242,000	T→A	18.2%	*158L (TAA→TTA)	bfr‑II ←	bacterioferritin
RA	1,242,004	C→A	18.2%	E157* (GAG→TAG)	bfr‑II ←	bacterioferritin
RA	1,265,830	C→T	10.5%	G722S (GGC→AGC)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,265,834	G→C	11.9%	A720A (GCC→GCG)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,265,838	A→G	11.1%	L719P (CTT→CCT)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,281,219	C→T	10.5%	intergenic (+39/+4)	PP_5742 → / ← PP_1118	membrane protein/recombinase‑like protein
RA	1,293,270	C→A	19.2%	A289A (GCC→GCA)	PP_1128 →	OmpA family protein
RA	1,299,783	T→C	9.7%	Q134R (CAG→CGG) ‡	PP_1134 ←	hypothetical protein
RA	1,299,784	G→A	12.5%	Q134* (CAG→TAG) ‡	PP_1134 ←	hypothetical protein
RA	1,307,446	C→G	16.7%	G60R (GGC→CGC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,307,447	C→G	17.3%	A59A (GCG→GCC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,327,127	C→T	58.1%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,350,507	T→A	12.2%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,350,508	T→A	12.2%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,356,411	G→C	24.3%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,376,327	A→T	19.8%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,328	G→C	20.0%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,329	A→T	20.0%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,385,153	G→A	16.7%	intergenic (‑117/+44)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,154	T→A	16.7%	intergenic (‑118/+43)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,155	G→T	16.6%	intergenic (‑119/+42)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,156	A→C	16.1%	intergenic (‑120/+41)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,157	T→A	15.4%	intergenic (‑121/+40)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
RA	1,385,158	T→C	15.4%	intergenic (‑122/+39)	proS ← / ← oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
JC	1,385,534	Δ69 bp	89.6%	coding (861‑929/1266 nt)	oprD ←	basic amino acid specific porin OprD
RA	1,387,901	G→A	14.3%	intergenic (+121/+1)	PP_1208 → / ← PP_1209	SlyX family protein/cold‑shock protein
RA	1,387,902	T→C	14.3%	*198W (TGA→TGG)	PP_1209 ←	cold‑shock protein
RA	1,388,043	G→T	8.3%	G151G (GGC→GGA)	PP_1209 ←	cold‑shock protein
RA	1,388,050	T→A	8.3%	D149V (GAC→GTC)	PP_1209 ←	cold‑shock protein
RA	1,403,596	G→A	18.6%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,597	T→C	18.2%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,429,568	G→A	20.0%	intergenic (+78/‑402)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,429,571	T→C	23.8%	intergenic (+81/‑399)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,444,094	Δ1 bp	13.3%	coding (99/948 nt)	PP_1262 ←	LysR family transcriptional regulator
RA	1,444,098:1	+G	13.8%	coding (95/948 nt)	PP_1262 ←	LysR family transcriptional regulator
RA	1,451,903	C→T	16.2%	P20S (CCT→TCT)	PP_1271 →	putative Multidrug efflux MFS transporter
RA	1,457,924	T→G	25.1%	V92V (GTT→GTG)	PP_1276 →	hypothetical protein
RA	1,457,925	C→A	25.1%	H93N (CAC→AAC)	PP_1276 →	hypothetical protein
RA	1,470,634	T→G	13.8%	P224P (CCA→CCC)	alg44 ←	alginate biosynthesis protein Alg44
RA	1,483,882	C→G	13.8%	intergenic (+20/‑48)	yhdW → / → yhdX	amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease
RA	1,483,885	C→G	15.5%	intergenic (+23/‑45)	yhdW → / → yhdX	amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease
RA	1,504,076	T→A	20.0%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,077	T→A	20.0%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,511,485	G→A	8.9%	pseudogene (124/1851 nt)	PP_1325 ←	putative lipoprotein
RA	1,511,486	T→C	9.1%	pseudogene (123/1851 nt)	PP_1325 ←	putative lipoprotein
RA	1,515,933	C→A	8.1%	P276T (CCG→ACG)	ftsI →	peptidoglycan DD transpeptidase
RA	1,553,252	A→C	15.0%	E84A (GAG→GCG)	PP_1363 →	hypothetical protein
RA	1,553,255	G→T	15.0%	R85L (CGC→CTC)	PP_1363 →	hypothetical protein
RA	1,622,830	T→C	7.4%	D190G (GAC→GGC)	PP_1422 ←	hypothetical protein
RA	1,625,249	G→T	10.0%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,250	A→C	10.3%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,629,495	G→T	13.7%	Q321H (CAG→CAT)	mucB →	sigma factor AlgU regulator MucB
RA	1,629,498	A→C	14.0%	*322Y (TAA→TAC)	mucB →	sigma factor AlgU regulator MucB
RA	1,632,887	A→C	8.7%	A533A (GCA→GCC)	lepA →	elongation factor 4
RA	1,632,892	T→A	10.0%	I535N (ATT→AAT)	lepA →	elongation factor 4
RA	1,638,421	A→T	11.1%	W121R (TGG→AGG)	PP_1437 ←	heavy metal sensor histidine kinase
RA	1,639,638	C→T	9.0%	intergenic (‑186/‑125)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,656,054	Δ1 bp	11.8%	coding (757/4527 nt)	PP_1449 ←	hypothetical protein
RA	1,656,058:1	+C	11.4%	coding (753/4527 nt)	PP_1449 ←	hypothetical protein
RA	1,661,519	C→A	21.7%	A50D (GCC→GAC)	PP_1456 →	membrane protein
RA	1,661,522	T→A	21.6%	L51Q (CTG→CAG)	PP_1456 →	membrane protein
RA	1,661,525	T→G	22.4%	V52G (GTC→GGC)	PP_1456 →	membrane protein
RA	1,666,823	A→G	10.2%	intergenic (‑53/‑218)	PP_1460 ← / → ffh	membrane protein/signal recognition particle GTPase subunit
RA	1,668,384	G→C	7.8%	G448G (GGG→GGC)	ffh →	signal recognition particle GTPase subunit
RA	1,668,389	T→C	7.7%	L450P (CTG→CCG)	ffh →	signal recognition particle GTPase subunit
RA	1,668,394	G→C	7.7%	G452R (GGT→CGT) ‡	ffh →	signal recognition particle GTPase subunit
RA	1,668,395	G→C	7.7%	G452A (GGT→GCT) ‡	ffh →	signal recognition particle GTPase subunit
RA	1,668,400	G→A	8.0%	G454S (GGC→AGC)	ffh →	signal recognition particle GTPase subunit
RA	1,691,825	C→A	18.8%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,828	T→G	18.7%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,834	C→G	11.8%	R87R (CGC→CGG)	PP_1489 →	CheW domain‑containing protein
RA	1,698,852	Δ1 bp	10.3%	coding (558/1014 nt)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,698,856:1	+C	10.8%	coding (562/1014 nt)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,703,290	A→G	9.4%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,292	G→C	8.2%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,294	C→T	8.0%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,712,993	T→A	8.7%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,994	T→A	8.7%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,726,527	A→T	16.7%	L560Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,726,530	A→T	16.5%	L559Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
JC	1,780,109	Δ62 bp	13.7%	intergenic (+26/+19)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,781,636	A→T	10.5%	L828Q (CTG→CAG)	glnD ←	uridylyltransferase
RA	1,781,639	A→T	10.5%	L827Q (CTG→CAG)	glnD ←	uridylyltransferase
RA	1,782,577	C→A	6.9%	Q514H (CAG→CAT) ‡	glnD ←	uridylyltransferase
RA	1,782,578	T→G	6.8%	Q514P (CAG→CCG) ‡	glnD ←	uridylyltransferase
RA	1,807,232	C→G	8.4%	I291M (ATC→ATG)	pyrG →	CTP synthase
RA	1,807,235	C→G	10.0%	A292A (GCC→GCG)	pyrG →	CTP synthase
RA	1,810,377	T→G	14.3%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,810,378	C→A	14.3%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,843,140	G→A	100%	Q566* (CAG→TAG)	gacS ←	sensor protein GacS
RA	1,852,005	G→A	100%	R350H (CGT→CAT)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,859,150	C→G	22.9%	intergenic (+28/+73)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,156	A→T	22.9%	intergenic (+34/+67)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,162	C→G	22.9%	intergenic (+40/+61)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,569	A→C	16.7%	intergenic (‑119/+37)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,571	T→A	16.7%	intergenic (‑121/+35)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,573	G→T	17.3%	intergenic (‑123/+33)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,899,849	A→T	16.7%	K120* (AAG→TAG) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,899,850	A→T	16.7%	K120M (AAG→ATG) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,915,868	A→T	16.3%	intergenic (+254/‑35)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,870	A→T	14.3%	intergenic (+256/‑33)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,872	A→T	16.9%	intergenic (+258/‑31)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,920,977	A→G	11.1%	N125D (AAC→GAC)	PP_1720 →	alcohol dehydrogenase
RA	1,921,591	T→A	15.4%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,592	T→A	15.4%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,935,789	C→G	15.4%	A16A (GCC→GCG)	PP_1736 →	hypothetical protein
RA	1,935,790	C→G	15.4%	R17G (CGC→GGC)	PP_1736 →	hypothetical protein
RA	1,960,142	T→A	9.7%	intergenic (+50/‑78)	bolA → / → PP_1758	DNA‑binding transcriptional dual regulator/rhodanese‑like domain‑containing sulfurtransferase
RA	1,986,394	G→A	11.8%	G324S (GGC→AGC)	cpsG →	phosphomannomutase
RA	1,989,188	G→C	10.3%	G132A (GGC→GCC)	PP_1780 →	mannosyltransferase
RA	2,003,070	G→C	10.2%	V990L (GTG→CTG)	PP_1786 →	glycosyl transferase
RA	2,025,079	C→A	11.8%	Y12* (TAC→TAA)	wbpZ →	glycosyl transferase
RA	2,063,228	C→G	15.2%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,244	G→A	14.7%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,194	A→T	17.5%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,068,195	A→T	12.7%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,077,807	C→T	14.0%	A163V (GCG→GTG)	PP_1853 →	LysR family transcriptional regulator
RA	2,077,810	A→G	14.3%	H164R (CAC→CGC)	PP_1853 →	LysR family transcriptional regulator
RA	2,081,155	G→T	11.1%	intergenic (+30/+85)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,081,156	C→T	11.1%	intergenic (+31/+84)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,081,157	A→G	11.1%	intergenic (+32/+83)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,081,158	A→C	11.1%	intergenic (+33/+82)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,087,376	C→G	23.3%	intergenic (+146/+772)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,377	C→G	23.4%	intergenic (+147/+771)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,469	T→A	13.5%	intergenic (+72/+19)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,470	T→A	13.5%	intergenic (+73/+18)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,099,993	G→C	11.5%	intergenic (‑61/‑144)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,099,994	G→C	11.4%	intergenic (‑62/‑143)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,099,995	G→C	11.4%	intergenic (‑63/‑142)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,113,719	G→T	7.8%	Q204K (CAG→AAG)	PP_1882 ←	membrane protein
RA	2,113,722	A→C	8.0%	Y203D (TAT→GAT)	PP_1882 ←	membrane protein
RA	2,128,306	C→A	12.4%	L1212M (CTG→ATG)	PP_1887 →	hypothetical protein
RA	2,147,927	G→T	9.7%	A879D (GCC→GAC)	rne ←	ribonuclease E
RA	2,147,930	A→C	8.4%	V878G (GTC→GGC)	rne ←	ribonuclease E
RA	2,185,374	C→A	17.2%	A760S (GCA→TCA)	PP_1936 ←	membrane protein
RA	2,237,721	Δ1 bp	10.5%	coding (906/1551 nt)	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,237,723:1	+G	10.5%	coding (904/1551 nt)	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,241,611	G→C	13.3%	noncoding (35/76 nt)	PP_t25 →	tRNA‑Ala
RA	2,271,709	C→T	28.6%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,710	A→G	28.6%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,273,095	A→G	12.9%	intergenic (+17/+274)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,105	C→G	9.5%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,109	A→T	9.5%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,113	C→G	9.5%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,277,210	G→C	11.1%	A52G (GCC→GGC)	PP_2006 ←	membrane protein
RA	2,282,813	T→G	32.3%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,817	G→C	29.6%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,818	G→C	29.8%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,822	C→A	28.6%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,294,064	T→A	16.0%	L6M (TTG→ATG)	PP_2020 →	lipoprotein
RA	2,334,712	G→A	16.8%	R596R (CGC→CGT)	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,336,542	A→G	9.3%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,389,297	A→G	8.3%	K39E (AAG→GAG)	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,389,301	G→C	7.9%	G40A (GGC→GCC)	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,389,305	C→T	7.3%	L41L (CTC→CTT)	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,395,626	G→C	11.4%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,628	A→T	10.4%	intergenic (‑193/+50)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,630	G→C	12.3%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,403,353	T→A	15.1%	intergenic (‑249/‑64)	PP_2105 ← / → PP_2106	hypothetical protein/ammonium transporter
RA	2,404,284	G→A	10.7%	G290S (GGC→AGC) ‡	PP_2106 →	ammonium transporter
RA	2,404,286	C→G	10.9%	G290G (GGC→GGG) ‡	PP_2106 →	ammonium transporter
RA	2,404,288	T→C	12.0%	L291P (CTG→CCG)	PP_2106 →	ammonium transporter
RA	2,410,897	G→A	11.8%	D198D (GAC→GAT)	acnA‑I ←	aconitate hydratase
RA	2,412,947	G→C	10.8%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,412,948	G→C	10.7%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,420,641	Δ1 bp	18.5%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,645:1	+T	17.9%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,438,446	C→T	8.5%	L441L (CTC→CTT)	fadB →	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
RA	2,438,447	A→G	8.7%	K442E (AAG→GAG)	fadB →	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
RA	2,442,711	G→T	15.0%	P602P (CCG→CCT)	topA →	DNA topoisomerase I
RA	2,442,716	A→C	16.7%	K604T (AAG→ACG)	topA →	DNA topoisomerase I
RA	2,470,656	Δ1 bp	12.1%	coding (178/1182 nt)	PP_2165 →	two‑component system response regulator
RA	2,472,170	A→T	9.8%	intergenic (+31/+118)	PP_2166 → / ← PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
RA	2,472,171	A→T	9.8%	intergenic (+32/+117)	PP_2166 → / ← PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
RA	2,478,883	G→A	16.1%	intergenic (+93/+352)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,884	C→A	16.1%	intergenic (+94/+351)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,888	G→C	15.6%	intergenic (+98/+347)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,892	T→G	16.1%	intergenic (+102/+343)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,893	T→C	18.4%	intergenic (+103/+342)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,508,074	T→A	11.4%	Q48L (CAG→CTG)	PP_2201 ←	alpha/beta family hydrolase
RA	2,529,043	G→C	11.1%	intergenic (+127/‑280)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,529,044	G→C	11.1%	intergenic (+128/‑279)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,540,852	T→A	14.3%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,853	G→C	14.4%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,854	T→A	12.9%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,568,736	T→A	17.3%	Q285H (CAA→CAT)	PP_2252 ←	hypothetical protein
RA	2,568,739	T→G	18.1%	E284D (GAA→GAC)	PP_2252 ←	hypothetical protein
RA	2,568,744	C→A	11.8%	V283F (GTC→TTC)	PP_2252 ←	hypothetical protein
RA	2,568,747	T→A	12.6%	M282L (ATG→TTG)	PP_2252 ←	hypothetical protein
RA	2,623,242	A→G	23.9%	intergenic (+35/‑211)	PP_5517 → / → PP_2295	hypothetical protein/antirestriction protein
RA	2,623,245	C→T	21.4%	intergenic (+38/‑208)	PP_5517 → / → PP_2295	hypothetical protein/antirestriction protein
RA	2,650,131	C→A	19.3%	intergenic (+27/+107)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,134	T→A	18.7%	intergenic (+30/+104)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,650,137	T→G	18.2%	intergenic (+33/+101)	PP_2320 → / ← oprI	hypothetical protein/major outer membrane lipoprotein
RA	2,653,708	T→A	27.6%	intergenic (+104/‑21)	PP_2325 → / → PP_2326	2‑dehydropantoate 2‑reductase/universal stress protein
RA	2,669,714	T→G	15.5%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,669,717	C→A	16.1%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,674,464	T→C	13.8%	L135P (CTT→CCT)	PP_2343 →	hypothetical protein
RA	2,680,476	A→T	12.5%	A274A (GCT→GCA) ‡	PP_2350 ←	LysR family transcriptional regulator
RA	2,680,478	C→G	12.5%	A274P (GCT→CCT) ‡	PP_2350 ←	LysR family transcriptional regulator
RA	2,680,481	C→G	12.8%	V273L (GTA→CTA)	PP_2350 ←	LysR family transcriptional regulator
RA	2,680,483	A→T	12.1%	L272Q (CTG→CAG)	PP_2350 ←	LysR family transcriptional regulator
RA	2,693,846	G→A	13.8%	A32T (GCC→ACC)	PP_2362 →	usher protein
RA	2,693,853	T→C	11.3%	V34A (GTC→GCC)	PP_2362 →	usher protein
RA	2,711,029	T→G	8.6%	intergenic (+289/+25)	PP_2373 → / ← PP_2374	hypothetical protein/hypothetical protein
RA	2,711,030	C→A	8.5%	intergenic (+290/+24)	PP_2373 → / ← PP_2374	hypothetical protein/hypothetical protein
RA	2,713,709	C→T	11.1%	G480S (GGC→AGC)	metH ←	cobalamin‑dependent methionine synthase
RA	2,713,712	A→G	11.4%	Y479H (TAT→CAT)	metH ←	cobalamin‑dependent methionine synthase
RA	2,731,871	G→T	14.2%	A389S (GCG→TCG)	polB →	DNA polymerase II
RA	2,777,050	C→G	8.0%	W166C (TGG→TGC)	PP_2429 ←	membrane protein
RA	2,777,233	Δ1 bp	13.3%	coding (315/585 nt)	PP_2429 ←	membrane protein
RA	2,789,637	G→C	9.3%	*63S (TGA→TCA)	PP_2441 →	hypothetical protein
RA	2,802,435	T→C	17.9%	L259P (CTG→CCG) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,802,436	G→A	18.0%	L259L (CTG→CTA) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,812,821	C→G	12.1%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,816,637	T→A	12.9%	I21N (ATT→AAT)	PP_2472 →	MerR family transcriptional regulator
RA	2,851,310	T→C	8.2%	W18R (TGG→CGG)	PP_5530 →	hypothetical protein
RA	2,852,440	T→A	11.8%	Q312L (CAG→CTG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,871,819	C→T	11.8%	S185L (TCG→TTG)	PP_2524 →	HD domain‑containing protein
RA	2,909,327	T→C	7.8%	Q385R (CAG→CGG) ‡	aprDA ←	alkaline protease secretion ABC transporter ATP‑binding protein
RA	2,909,328	G→A	8.1%	Q385* (CAG→TAG) ‡	aprDA ←	alkaline protease secretion ABC transporter ATP‑binding protein
RA	2,931,581	A→T	12.2%	F855Y (TTC→TAC) ‡	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,931,582	A→T	12.2%	F855I (TTC→ATC) ‡	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,933,577	A→T	10.0%	F190I (TTC→ATC)	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,933,579	T→G	10.0%	D189A (GAC→GCC)	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,933,581	C→G	10.0%	A188A (GCG→GCC) ‡	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,933,583	C→A	10.3%	A188S (GCG→TCG) ‡	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,933,585	A→T	10.3%	M187K (ATG→AAG)	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,941,595	Δ1 bp	15.2%	coding (784/912 nt)	PP_2574 →	LysR family transcriptional regulator
RA	2,941,599:1	+G	13.9%	coding (788/912 nt)	PP_2574 →	LysR family transcriptional regulator
RA	3,006,511	T→G	12.1%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,021,073	A→T	14.3%	Q523L (CAG→CTG)	PP_2638 →	cellulose synthase operon protein C
RA	3,030,456	C→G	10.5%	intergenic (+413/‑281)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,460	G→C	10.3%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,463	G→C	10.3%	intergenic (+420/‑274)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,069,868	C→G	16.7%	S305* (TCA→TGA)	aldB‑II →	aldehyde dehydrogenase
RA	3,077,153	A→C	7.5%	I248S (ATC→AGC)	PP_2687 ←	hypothetical protein
RA	3,077,158	G→T	7.3%	A246A (GCC→GCA)	PP_2687 ←	hypothetical protein
RA	3,077,161	A→C	7.3%	H245Q (CAT→CAG)	PP_2687 ←	hypothetical protein
RA	3,087,485	G→T	11.1%	R264M (AGG→ATG)	PP_2695 →	LysR family transcriptional regulator
RA	3,102,237	T→A	11.5%	L9M (TTG→ATG) ‡	PP_2712 →	hypothetical protein
RA	3,102,238	T→A	11.6%	L9* (TTG→TAG) ‡	PP_2712 →	hypothetical protein
RA	3,103,512	A→T	15.4%	K219M (AAG→ATG)	PP_2713 →	two‑component system response regulator
RA	3,103,514	G→C	16.0%	A220P (GCA→CCA) ‡	PP_2713 →	two‑component system response regulator
RA	3,103,516	A→T	16.0%	A220A (GCA→GCT) ‡ M1M (ATG→TTG) †	PP_2713 → PP_2714 →	two‑component system response regulator sensor histidine kinase
RA	3,116,213	T→C	18.6%	L303P (CTG→CCG)	PP_2732 →	hypothetical protein
RA	3,116,218	G→A	18.5%	G305S (GGC→AGC)	PP_2732 →	hypothetical protein
RA	3,137,695	C→T	12.5%	intergenic (+80/‑210)	PP_2753 → / → PP_2754	ABC transporter ATP‑binding protein/OprD family outer membrane porin
RA	3,137,696	A→G	12.5%	intergenic (+81/‑209)	PP_2753 → / → PP_2754	ABC transporter ATP‑binding protein/OprD family outer membrane porin
RA	3,166,099	G→C	11.7%	G163A (GGC→GCC)	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,166,255	C→A	16.6%	A215E (GCG→GAG)	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,189,321	G→C	21.3%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,189,322	G→C	20.6%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,189,641	T→A	12.5%	Q351L (CAG→CTG)	PP_2799 ←	class III aminotransferase
RA	3,189,646	A→C	11.9%	H349Q (CAT→CAG)	PP_2799 ←	class III aminotransferase
RA	3,190,303	G→T	12.0%	Y130* (TAC→TAA)	PP_2799 ←	class III aminotransferase
RA	3,198,945	A→T	16.7%	intergenic (‑246/+31)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,198,949	A→T	16.0%	intergenic (‑250/+27)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,198,953	A→T	17.4%	intergenic (‑254/+23)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,236,191	G→T	11.5%	G415C (GGT→TGT) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,236,193	T→A	11.1%	G415G (GGT→GGA) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,236,195	A→C	11.9%	Q416P (CAG→CCG)	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,274,879	T→A	14.3%	H198Q (CAT→CAA)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,274,881	C→G	16.7%	A199G (GCC→GGC)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,274,883	T→A	15.0%	L200M (TTG→ATG)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,277,384	C→T	13.3%	Q260Q (CAG→CAA)	ampC ←	beta‑lactamase
RA	3,277,389	T→C	14.3%	M259V (ATG→GTG)	ampC ←	beta‑lactamase
RA	3,277,390	G→A	18.4%	H258H (CAC→CAT)	ampC ←	beta‑lactamase
RA	3,277,395	A→G	14.3%	L257L (TTG→CTG)	ampC ←	beta‑lactamase
RA	3,288,116	G→C	14.3%	R14G (CGC→GGC)	xthA ←	exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,288,117	G→C	14.3%	A13A (GCC→GCG)	xthA ←	exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,291,043	A→G	8.5%	Q95R (CAG→CGG)	PP_2893 →	hypothetical protein
RA	3,296,544	T→C	10.7%	Q125R (CAG→CGG) ‡	PP_2898 ←	hypothetical protein
RA	3,296,545	G→A	9.6%	Q125* (CAG→TAG) ‡	PP_2898 ←	hypothetical protein
RA	3,310,843	A→G	11.4%	I172V (ATT→GTT)	gabP‑III →	gamma‑aminobutyrate permease
RA	3,311,787	C→T	18.1%	intergenic (+66/‑22)	gabP‑III → / → PP_2912	gamma‑aminobutyrate permease/hypothetical protein
RA	3,334,996:1	+T	8.9%	coding (609/1704 nt)	PP_2932 ←	amidase family protein
RA	3,335,001	Δ1 bp	8.8%	coding (604/1704 nt)	PP_2932 ←	amidase family protein
RA	3,372,139	A→G	11.8%	intergenic (‑24/‑95)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,376,478	Δ1 bp	12.8%	intergenic (+10/‑138)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,376,482	G→C	12.8%	intergenic (+14/‑134)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,376,485:1	+T	12.8%	intergenic (+17/‑131)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,420,694	A→T	21.9%	intergenic (‑41/+68)	PP_3035 ← / ← PP_5554	hypothetical protein/hypothetical protein
RA	3,420,695	A→T	18.5%	intergenic (‑42/+67)	PP_3035 ← / ← PP_5554	hypothetical protein/hypothetical protein
RA	3,441,611	G→A	14.8%	Q109Q (CAG→CAA)	PP_3062 →	tail length determination protein
RA	3,459,977	A→T	9.3%	L143Q (CTG→CAG)	PP_3075 ←	transcriptional regulator
RA	3,459,983	T→A	9.6%	D141V (GAC→GTC)	PP_3075 ←	transcriptional regulator
RA	3,471,227	C→T	16.0%	E450K (GAA→AAA)	PP_3084 ←	ferric siderophore receptor
RA	3,552,437	Δ1 bp	14.7%	coding (51/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,552,442:1	+G	15.2%	coding (56/978 nt)	PP_3137 →	group 2 family glycosyl transferase
RA	3,554,502	G→C	11.4%	L25L (CTG→CTC)	PP_3139 →	group 1 family glycosyl transferase
RA	3,554,503	G→C	11.4%	E26Q (GAG→CAG)	PP_3139 →	group 1 family glycosyl transferase
RA	3,587,965	C→A	7.0%	A253D (GCC→GAC)	catA‑II →	catechol 1,2‑dioxygenase
RA	3,624,187	G→C	14.8%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,632,123	A→G	8.5%	N325S (AAC→AGC)	PP_5590 →	hypothetical protein
RA	3,632,128	G→T	8.7%	E327* (GAG→TAG) ‡	PP_5590 →	hypothetical protein
RA	3,632,129	A→C	10.3%	E327A (GAG→GCG) ‡	PP_5590 →	hypothetical protein
RA	3,632,134	C→T	10.0%	L329L (CTG→TTG)	PP_5590 →	hypothetical protein
RA	3,684,036	C→A	12.9%	L97M (CTG→ATG) ‡	PP_3250 →	transporter
RA	3,684,037	T→G	12.5%	L97R (CTG→CGG) ‡	PP_3250 →	transporter
RA	3,701,211	C→A	8.7%	T108T (ACG→ACT)	PP_3266 ←	hypothetical protein
RA	3,711,943	G→A	13.2%	A27A (GCC→GCT)	paaB ←	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit
RA	3,731,889	A→G	13.8%	R465R (CGT→CGC)	PP_3299 ←	lipoprotein
RA	3,731,892	C→T	11.6%	A464A (GCG→GCA)	PP_3299 ←	lipoprotein
RA	3,737,040	Δ1 bp	11.8%	coding (1894/3093 nt)	PP_3302 →	RND family transporter
RA	3,737,044	G→A	12.1%	R633H (CGT→CAT) ‡	PP_3302 →	RND family transporter
RA	3,737,045	T→C	12.1%	R633R (CGT→CGC) ‡	PP_3302 →	RND family transporter
RA	3,737,048:1	+C	12.5%	coding (1902/3093 nt)	PP_3302 →	RND family transporter
RA	3,752,681	G→C	9.3%	G415G (GGC→GGG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,753,638	G→T	11.4%	A96A (GCC→GCA)	PP_3316 ←	chaperone‑associated ATPase
RA	3,753,641	A→C	11.1%	V95V (GTT→GTG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,762,985	A→T	16.7%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,762,990	A→T	14.3%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,763,545	A→G	16.2%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,547	G→C	16.2%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,549	C→T	19.7%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,562	G→T	13.8%	intergenic (+39/+1636)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,766,194	G→T	11.5%	R161L (CGA→CTA) ‡	PP_5599 →	LysR family transcriptional regulator
RA	3,766,195	A→C	12.2%	R161R (CGA→CGC) ‡	PP_5599 →	LysR family transcriptional regulator
RA	3,781,998	T→A	16.2%	M277K (ATG→AAG)	nikB →	nickel ABC transporter permease
RA	3,782,002	G→C	16.7%	Q278H (CAG→CAC)	nikB →	nickel ABC transporter permease
RA	3,782,006	T→A	16.2%	F280I (TTC→ATC)	nikB →	nickel ABC transporter permease
RA	3,798,742:1	+A	13.9%	coding (201/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,747	A→T	13.4%	W66R (TGG→AGG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,752	Δ1 bp	13.5%	coding (191/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,853,809	C→T	27.3%	intergenic (+48/+34)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,815	T→C	28.1%	intergenic (+54/+28)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,816	G→A	29.1%	intergenic (+55/+27)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,822	A→G	29.1%	intergenic (+61/+21)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
JC	3,866,157	Δ3 bp	26.7%	coding (763‑765/1020 nt)	PP_3415 ←	LacI family transcriptional regulator
RA	3,866,243	C→A	43.5%	E227* (GAG→TAG)	PP_3415 ←	LacI family transcriptional regulator
RA	3,869,902	T→G	10.0%	E354A (GAG→GCG) ‡	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,869,903	C→A	12.4%	E354* (GAG→TAG) ‡	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,876,231	C→G	9.5%	L227V (CTG→GTG)	xcpS →	type II secretion pathway protein XcpS
RA	3,876,562	Δ1 bp	10.5%	coding (1010/1212 nt)	xcpS →	type II secretion pathway protein XcpS
RA	3,876,566:1	+A	11.1%	coding (1014/1212 nt)	xcpS →	type II secretion pathway protein XcpS
RA	3,882,278	Δ1 bp	13.8%	coding (893/1416 nt)	oprN →	multidrug RND transporter outer membrane protein OprN
RA	3,882,291:1	+G	13.3%	coding (906/1416 nt)	oprN →	multidrug RND transporter outer membrane protein OprN
RA	3,893,526	G→A	8.6%	E282E (GAG→GAA)	rarD →	chloramphenicol‑sensitive protein
RA	3,893,528	G→C	8.5%	G283A (GGC→GCC)	rarD →	chloramphenicol‑sensitive protein
RA	3,893,530	T→C	8.5%	F284L (TTC→CTC)	rarD →	chloramphenicol‑sensitive protein
RA	3,908,667	A→G	11.1%	D191G (GAC→GGC)	PP_3450 →	TPR repeat‑containing protein
RA	3,908,670	T→A	9.4%	L192Q (CTG→CAG)	PP_3450 →	TPR repeat‑containing protein
RA	3,908,673	C→T	9.2%	A193V (GCC→GTC)	PP_3450 →	TPR repeat‑containing protein
RA	3,947,745	G→T	9.7%	A116A (GCC→GCA)	PP_3483 ←	type II secretion system protein
RA	3,979,755	A→T	10.5%	L307Q (CTG→CAG)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,980,324	G→A	10.8%	D117D (GAC→GAT) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,980,326	C→G	8.8%	D117H (GAC→CAC) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	4,006,640	G→C	9.3%	A427G (GCC→GGC)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,018,109	A→T	10.9%	Q167L (CAG→CTG)	PP_3545 →	two‑component system sensor histidine kinase/response regulator
RA	4,026,285	T→C	7.1%	intergenic (‑39/+140)	PP_3550 ← / ← PP_3551	transcriptional regulator EmrR/LuxR family transcriptional regulator
RA	4,072,818	Δ1 bp	14.8%	coding (689/1308 nt)	mdtA ←	multidrug transporter membrane fusion protein
RA	4,072,822:1	+T	15.4%	coding (685/1308 nt)	mdtA ←	multidrug transporter membrane fusion protein
RA	4,090,100	C→G	12.8%	S36C (TCC→TGC) ‡	gudP →	glucarate transporter
RA	4,090,101	C→G	12.8%	S36S (TCC→TCG) ‡	gudP →	glucarate transporter
RA	4,163,542	T→C	10.5%	intergenic (‑37/‑145)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,163,546	T→G	12.8%	intergenic (‑41/‑141)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,163,549	C→A	13.1%	intergenic (‑44/‑138)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,163,553	G→A	15.6%	intergenic (‑48/‑134)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,170,489	T→G	12.2%	L56R (CTG→CGG)	PP_3669 →	LysR family transcriptional regulator
RA	4,170,494	C→A	11.3%	R58S (CGC→AGC)	PP_3669 →	LysR family transcriptional regulator
RA	4,231,788	C→A	10.0%	intergenic (‑4/+80)	PP_3709 ← / ← PP_5625	hypothetical protein/hypothetical protein
RA	4,240,280	C→T	12.9%	P18P (CCG→CCA)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,240,286	T→G	14.3%	R16S (AGA→AGC)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,240,291	C→A	15.4%	A15S (GCT→TCT)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,244,402	G→C	12.5%	S221R (AGC→AGG)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,248,764	G→T	8.6%	A436D (GCT→GAT)	PP_3724 ←	acyl‑CoA synthetase
RA	4,248,767	A→C	7.1%	I435S (ATC→AGC)	PP_3724 ←	acyl‑CoA synthetase
RA	4,251,555	Δ1 bp	11.8%	coding (522/795 nt)	PP_3726 ←	enoyl‑CoA hydratase/isomerase family protein
RA	4,264,433	G→T	10.1%	V228L (GTG→TTG)	vanA →	vanillate O‑demethylase oxygenase subunit
RA	4,268,928	T→A	8.2%	E139D (GAA→GAT) ‡	PP_3740 ←	MFS transporter
RA	4,268,929	T→A	8.2%	E139V (GAA→GTA) ‡	PP_3740 ←	MFS transporter
RA	4,273,744	G→A	10.8%	R59R (CGC→CGT)	glcC ←	transcriptional regulator GlcC
RA	4,274,674	G→T	12.1%	S196I (AGC→ATC)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,274,677	A→C	10.3%	D197A (GAT→GCT)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,288,998	Δ1 bp	15.6%	coding (169/822 nt)	PP_3760 ←	methyltransferase
RA	4,289,002:1	+G	16.1%	coding (165/822 nt)	PP_3760 ←	methyltransferase
RA	4,293,590	T→A	9.3%	Q153L (CAG→CTG)	PP_3763 ←	precorrin‑6A synthase
RA	4,301,621	G→C	11.1%	intergenic (+67/‑1233)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,314,775	Δ1 bp	14.3%	coding (933/1209 nt)	aspC →	aminotransferase
RA	4,314,779:1	+T	13.8%	coding (937/1209 nt)	aspC →	aminotransferase
RA	4,316,066	A→C	13.3%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,069	G→T	14.3%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,707	T→A	9.3%	V249D (GTC→GAC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,712	A→G	9.1%	M251V (ATG→GTG)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,332,737	C→T	9.7%	A166V (GCA→GTA)	PP_3804 →	hypothetical protein
RA	4,348,749	A→G	58.7%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,353,340	C→G	15.6%	P141R (CCG→CGG)	yrpB →	2‑nitropropane dioxygenase
RA	4,357,790	T→C	9.7%	intergenic (+92/‑162)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,357,791	G→A	9.8%	intergenic (+93/‑161)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,415,076	T→C	14.5%	intergenic (+141/+27)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,415,081	G→A	12.5%	intergenic (+146/+22)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,437,780	C→T	17.6%	A299V (GCG→GTG)	PP_3932 →	diguanylate cyclase
RA	4,437,783	A→G	17.7%	H300R (CAC→CGC)	PP_3932 →	diguanylate cyclase
RA	4,438,253	A→T	10.5%	K457* (AAG→TAG) ‡	PP_3932 →	diguanylate cyclase
RA	4,438,254	A→T	10.5%	K457M (AAG→ATG) ‡	PP_3932 →	diguanylate cyclase
RA	4,456,394	A→T	8.2%	L212Q (CTG→CAG)	PP_3950 ←	methyl‑accepting chemotaxis transducer
RA	4,470,272	A→C	14.9%	V321G (GTG→GGG)	PP_3961 ←	transporter
RA	4,470,276	T→C	16.1%	I320V (ATC→GTC)	PP_3961 ←	transporter
RA	4,480,610	C→A	11.1%	A145A (GCC→GCA)	PP_3972 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	4,480,611	T→G	11.4%	C146G (TGC→GGC)	PP_3972 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	4,482,794	T→A	13.9%	A252A (GCT→GCA)	PP_3974 →	LysR family transcriptional regulator
RA	4,514,494	A→G	13.1%	V181A (GTC→GCC)	ftsK ←	DNA translocase FtsK
RA	4,522,021	G→T	12.2%	intergenic (‑240/‑175)	icd ← / → idh	NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase
RA	4,522,022	A→C	12.2%	intergenic (‑241/‑174)	icd ← / → idh	NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase
RA	4,528,397	T→A	10.9%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,553,312	A→T	13.6%	L553Q (CTG→CAG)	PP_4041 ←	glycoside hydrolase
RA	4,553,315	A→T	13.6%	L552Q (CTG→CAG)	PP_4041 ←	glycoside hydrolase
RA	4,564,768	C→T	13.2%	intergenic (‑864/‑34)	vgrG‑III ← / → glgA	type VI secretion system protein/glycogen synthase
RA	4,564,769	A→G	13.4%	intergenic (‑865/‑33)	vgrG‑III ← / → glgA	type VI secretion system protein/glycogen synthase
RA	4,580,596	C→G	13.8%	G959A (GGC→GCC)	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,646,078	G→A	19.0%	Q199Q (CAG→CAA)	fusB →	elongation factor G 2
RA	4,665,047	C→G	14.8%	R45R (CGC→CGG)	nuoI →	NADH‑quinone oxidoreductase subunit I
RA	4,665,050	C→G	14.4%	Y46* (TAC→TAG)	nuoI →	NADH‑quinone oxidoreductase subunit I
RA	4,665,057	C→G	14.2%	R49G (CGC→GGC)	nuoI →	NADH‑quinone oxidoreductase subunit I
RA	4,672,979	C→A	20.0%	V26L (GTG→TTG)	PP_4136 ←	LuxR family transcriptional regulator
RA	4,672,980	T→G	20.0%	Q25H (CAA→CAC)	PP_4136 ←	LuxR family transcriptional regulator
RA	4,705,460	T→A	15.0%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,711,190	A→G	10.5%	V133A (GTT→GCT)	gpsA ←	glycerol‑3‑phosphate dehydrogenase
RA	4,741,273:1	+C	68.8%	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	31.3%	intergenic (+465/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,275	A→G	68.8%	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,277	C→T	100%	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,280	C→T	100%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283	C→G	100%	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,285	2 bp→CT	100%	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298:1	+T	30.0%	intergenic (+489/+263)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,299	C→T	70.0%	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,301	A→C	70.0%	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,302	A→G	34.7%	intergenic (+493/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,304	C→G	69.9%	intergenic (+495/+257)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,305	A→C	70.0%	intergenic (+496/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,760,260	T→G	10.0%	F93V (TTC→GTC)	pvdM →	dipeptidase
RA	4,765,973	C→G	10.0%	A194G (GCG→GGG)	fpvA →	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
RA	4,765,978	C→G	10.2%	P196A (CCG→GCG)	fpvA →	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
RA	4,765,984	A→G	10.3%	N198D (AAC→GAC)	fpvA →	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
RA	4,768,309	T→G	8.7%	E183A (GAG→GCG)	PP_4218 ←	lipase/esterase family protein
RA	4,811,682	G→A	14.3%	M213I (ATG→ATA)	dsbG →	protein disulfide isomerase
RA	4,820,857	T→C	7.7%	M3460V (ATG→GTG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,820,862	C→G	8.5%	S3458T (AGC→ACC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,820,865	C→G	8.5%	G3457A (GGT→GCT)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,824,196	A→G	13.2%	F2347L (TTC→CTC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,824,197	C→T	13.8%	E2346E (GAG→GAA)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,824,317	G→C	12.1%	S2306R (AGC→AGG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,842,941	Δ1 bp	17.6%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,842,949:1	+G	18.2%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,848,198	T→C	13.8%	L81P (CTG→CCG) ‡	PP_4263 →	cytochrome biogenesis protein
RA	4,848,199	G→A	13.8%	L81L (CTG→CTA) ‡	PP_4263 →	cytochrome biogenesis protein
RA	4,900,110	A→G	19.4%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,114	G→A	22.2%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,115	T→C	22.2%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,119	C→T	25.9%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,902,716	G→A	10.8%	V196M (GTG→ATG) ‡	PP_4310 →	hydantoin racemase
RA	4,902,717	T→C	10.7%	V196A (GTG→GCG) ‡	PP_4310 →	hydantoin racemase
RA	4,915,793	C→T	16.3%	G114S (GGC→AGC)	ccmC ←	protoheme IX reservoir complex subunit
RA	4,915,797	A→T	14.2%	V112V (GTT→GTA)	ccmC ←	protoheme IX reservoir complex subunit
RA	4,915,801	A→G	14.6%	L111P (CTG→CCG)	ccmC ←	protoheme IX reservoir complex subunit
RA	4,918,010	G→A	12.1%	V122I (GTC→ATC) ‡	PP_4328 →	hypothetical protein
RA	4,918,011	T→C	12.1%	V122A (GTC→GCC) ‡	PP_4328 →	hypothetical protein
RA	4,922,736	C→A	10.5%	R29L (CGC→CTC)	PP_4331 ←	hypothetical protein
RA	4,931,240	A→G	15.8%	S59P (TCC→CCC)	cheY ←	two‑component system response regulator
RA	4,931,245	C→T	17.1%	G57D (GGC→GAC)	cheY ←	two‑component system response regulator
RA	4,973,089	G→C	10.3%	S168S (TCC→TCG)	flgL ←	flagellar hook‑associated protein FlgL
RA	4,976,257	C→G	8.6%	D187H (GAC→CAC)	flgJ ←	peptidoglycan hydrolase FlgJ
RA	5,015,960	A→T	11.1%	intergenic (‑175/+59)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,961	A→T	11.1%	intergenic (‑176/+58)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,077,270	G→A	16.2%	intergenic (+17/+91)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,282	G→T	12.7%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,077,285	A→C	12.8%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,131,909	T→G	11.5%	L72R (CTG→CGG)	PP_4517 →	hypothetical protein
RA	5,141,747	G→A	14.0%	V12M (GTG→ATG) ‡	PP_4526 →	MFS transporter
RA	5,141,748	T→C	14.6%	V12A (GTG→GCG) ‡	PP_4526 →	MFS transporter
RA	5,152,176	G→A	13.4%	intergenic (‑205/+1209)	PP_5696 ← / ← PP_4537	hypothetical protein/membrane protein
RA	5,158,798	C→G	14.3%	V282V (GTC→GTG)	PP_4542 →	ABC transporter ATP‑binding protein/permease
RA	5,159,939	C→A	9.3%	K388N (AAG→AAT)	PP_4543 ←	hypothetical protein
RA	5,162,628	T→A	8.8%	intergenic (+103/+98)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,194,935	T→G	15.2%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,936	C→A	15.2%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,201,878	C→T	11.7%	A46V (GCC→GTC)	PP_4583 →	putative Peptidase
RA	5,201,881	A→G	11.9%	D47G (GAC→GGC)	PP_4583 →	putative Peptidase
RA	5,229,227	G→A	12.2%	intergenic (‑121/+55)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,239	Δ1 bp	16.7%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,243	C→G	16.7%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,246	C→G	15.2%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,249:1	+C	17.0%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,230,075	G→C	10.7%	A63G (GCG→GGG)	PP_4607 ←	transmembrane sensor
RA	5,232,045	G→C	9.9%	G233G (GGC→GGG)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,239,932	G→A	9.1%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,239,937	T→C	9.4%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,254,096	G→A	10.2%	L196L (CTG→TTG)	PP_4630 ←	MerR family transcriptional regulator
RA	5,276,067	C→T	15.4%	M226I (ATG→ATA)	cioA ←	cyanide insensitive ubiquinol oxidase subunit I
RA	5,297,286	A→T	12.5%	L42H (CTC→CAC)	TpbB ←	diguanylate cyclase
RA	5,297,289	A→T	12.7%	V41E (GTG→GAG)	TpbB ←	diguanylate cyclase
RA	5,304,640	G→A	11.8%	P887L (CCC→CTC)	recC ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
RA	5,304,643	T→C	11.8%	E886G (GAG→GGG)	recC ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
RA	5,329,444	T→A	10.2%	L10Q (CTG→CAG)	PP_4690 →	Rieske 2Fe‑2S family protein
RA	5,338,098	C→G	11.3%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,677	T→C	11.4%	noncoding (353/395 nt)	PP_mr53 →	CrcZ ncRNA
RA	5,338,680	G→A	11.8%	noncoding (356/395 nt)	PP_mr53 →	CrcZ ncRNA
RA	5,346,315	C→A	13.0%	V555V (GTC→GTA)	acsA‑II →	acetyl‑CoA synthetase
RA	5,346,316	T→G	13.1%	Y556D (TAC→GAC)	acsA‑II →	acetyl‑CoA synthetase
RA	5,363,111	G→T	11.7%	L235I (CTC→ATC)	glmM ←	phosphoglucosamine mutase
RA	5,363,112	A→C	11.9%	D234E (GAT→GAG)	glmM ←	phosphoglucosamine mutase
RA	5,367,830	A→T	12.8%	K102* (AAG→TAG) ‡	PP_4720 →	RNA‑binding protein
RA	5,367,831	A→T	12.8%	K102M (AAG→ATG) ‡	PP_4720 →	RNA‑binding protein
RA	5,382,317	A→T	16.1%	E124D (GAA→GAT)	smpB →	SsrA‑binding protein
RA	5,382,318	A→T	15.9%	I125F (ATC→TTC)	smpB →	SsrA‑binding protein
RA	5,397,705	A→T	24.1%	L223F (TTA→TTT)	hsdS →	type I restriction modification system specificity protein
RA	5,417,431	C→T	17.4%	G101S (GGT→AGT)	gudD ←	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
RA	5,417,434	C→G	17.9%	A100P (GCG→CCG)	gudD ←	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
RA	5,417,437	A→G	17.9%	S99P (TCG→CCG)	gudD ←	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
RA	5,424,545	C→G	7.9%	H32Q (CAC→CAG)	PP_4764 →	histone deacetylase family protein
RA	5,427,343	T→C	8.0%	N270D (AAT→GAT)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,430,424	A→G	14.0%	intergenic (‑58/+103)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,434,888	T→G	10.3%	N142H (AAC→CAC)	hrpB ←	ATP‑dependent helicase HrpB
RA	5,436,113	G→T	9.8%	E82* (GAG→TAG) ‡	fieF →	divalent cation efflux transporter
RA	5,436,114	A→C	9.8%	E82A (GAG→GCG) ‡	fieF →	divalent cation efflux transporter
RA	5,467,345	G→T	9.1%	G183G (GGC→GGA)	rlpA ←	RlpA‑like lipoprotein
RA	5,489,826:1	+C	10.5%	coding (260/597 nt)	PP_4825 →	MarC family membrane protein
RA	5,489,830	Δ1 bp	11.1%	coding (264/597 nt)	PP_4825 →	MarC family membrane protein
RA	5,521,919	C→T	10.3%	A7V (GCA→GTA)	PP_4855 →	osmotically‑inducible lipoprotein OsmE
RA	5,533,863	A→G	11.7%	G220G (GGT→GGC)	PP_4867 ←	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
RA	5,547,989	G→A	12.9%	A371A (GCC→GCT)	rnr ←	exoribonuclease R
RA	5,558,426	T→G	11.8%	K293T (AAG→ACG)	purA ←	adenylosuccinate synthetase
RA	5,559,994	T→A	11.8%	Q185L (CAG→CTG)	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,566,464	T→A	10.3%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,467	T→A	8.7%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,567,229	A→T	15.4%	L103* (TTG→TAG) ‡	mutL ←	DNA mismatch repair protein MutL
RA	5,567,230	A→T	15.4%	L103M (TTG→ATG) ‡	mutL ←	DNA mismatch repair protein MutL
RA	5,573,801	C→T	15.3%	G278G (GGC→GGT)	rsgA →	ribosome biogenesis GTPase RsgA
RA	5,585,562	A→T	8.0%	V74D (GTC→GAC)	parC ←	DNA topoisomerase IV subunit A
RA	5,600,250	T→G	16.7%	N1095H (AAC→CAC)	PP_4924 ←	subtilase family serine protease
RA	5,600,253	C→A	16.7%	G1094C (GGC→TGC)	PP_4924 ←	subtilase family serine protease
RA	5,610,048	C→A	100%	S173I (AGC→ATC)	PP_4929 ←	LysR family transcriptional regulator
RA	5,618,162	G→C	15.3%	R181G (CGT→GGT)	wzy ←	O‑antigen polymerase
RA	5,618,166	C→G	15.4%	R179R (CGG→CGC)	wzy ←	O‑antigen polymerase
RA	5,618,170	G→C	16.7%	P178R (CCT→CGT)	wzy ←	O‑antigen polymerase
RA	5,618,370	A→C	8.3%	L111L (CTT→CTG)	wzy ←	O‑antigen polymerase
RA	5,618,375	G→T	8.9%	Q110K (CAG→AAG)	wzy ←	O‑antigen polymerase
RA	5,631,164	G→A	8.9%	G215S (GGC→AGC)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,631,167	A→T	9.1%	K216* (AAG→TAG) ‡	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,631,168	A→T	9.0%	K216M (AAG→ATG) ‡	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,631,171	T→C	8.7%	L217P (CTG→CCG)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,634,508	T→G	16.7%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,634,509	C→A	16.2%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,655,677:1	+A	17.1%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,682	T→G	19.5%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,687	C→A	19.5%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,692	Δ1 bp	16.7%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,233	G→T	18.8%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,660,236	A→C	19.4%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,669,686	A→G	12.2%	M38V (ATG→GTG) ‡	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,669,687	T→C	12.5%	M38T (ATG→ACG) ‡	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,669,693	T→A	12.5%	V40D (GTC→GAC)	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,683,071	G→T	11.2%	P1293Q (CCG→CAG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,683,074	T→A	11.1%	D1292V (GAC→GTC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,683,077	A→C	11.8%	L1291R (CTG→CGG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,718,633	G→A	8.9%	A426T (GCC→ACC)	PP_5020 →	methyl‑accepting chemotaxis protein
RA	5,737,655	G→C	30.8%	intergenic (‑154/+48)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,737,658	G→C	30.2%	intergenic (‑157/+45)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,740,513	G→A	15.1%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,523	T→G	15.7%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,526	A→T	12.9%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,527	A→T	13.2%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,530	C→A	12.8%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,741,564	A→T	9.2%	intergenic (‑179/+49)	PP_5038 ← / ← PP_5039	lipoprotein/hypothetical protein
RA	5,746,541	G→C	16.0%	intergenic (+32/+67)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,746,544	G→C	16.0%	intergenic (+35/+64)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,746,952	G→A	15.6%	P360S (CCG→TCG)	PP_5043 ←	PhoPQ‑activated pathogenicity‑like protein
RA	5,750,454	C→T	19.2%	V389M (GTG→ATG)	thiI ←	tRNA sulfurtransferase
RA	5,750,455	A→G	19.2%	H388H (CAT→CAC)	thiI ←	tRNA sulfurtransferase
RA	5,790,207	C→G	9.1%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,807,262	A→G	10.8%	T599A (ACA→GCA)	mrcA →	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase
RA	5,824,905	A→C	7.8%	Y208* (TAT→TAG)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,908	G→T	7.8%	T207T (ACC→ACA)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,840,670:1	+A	10.8%	intergenic (‑34/+2)	sseA ← / ← PP_5119	3‑mercaptopyruvate sulfurtransferase/TetR family transcriptional regulator
RA	5,840,674	A→C	14.6%	*222E (TAG→GAG)	PP_5119 ←	TetR family transcriptional regulator
RA	5,840,675	G→T	12.5%	L221L (CTC→CTA)	PP_5119 ←	TetR family transcriptional regulator
RA	5,840,679	Δ1 bp	11.8%	coding (659/666 nt)	PP_5119 ←	TetR family transcriptional regulator
RA	5,887,112	T→G	8.3%	intergenic (‑41/‑89)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,120	C→A	8.0%	intergenic (‑49/‑81)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,890,184	T→C	9.5%	Y595H (TAT→CAT)	PP_5164 →	penicillin amidase family protein
RA	5,891,328	G→T	12.9%	L116M (CTG→ATG)	plpB ←	NLPA lipoprotein
RA	5,912,914	G→A	16.2%	E43K (GAG→AAG)	spuI →	glutamylpolyamine synthetase
RA	5,936,992	C→T	14.8%	N151N (AAC→AAT)	yhiI →	translation‑like protein
RA	5,951,040	C→A	14.9%	R658L (CGT→CTT)	ppk ←	polyphosphate kinase
RA	5,951,043	T→G	14.7%	K657T (AAG→ACG)	ppk ←	polyphosphate kinase
RA	5,960,051	A→T	10.2%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,967,695	G→T	12.3%	P18P (CCC→CCA)	amtB ←	ammonium transporter AmtB
RA	5,988,865	G→A	23.3%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,875	T→C	24.1%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,880	C→T	25.3%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,881	G→T	25.1%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,882	C→T	25.2%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,885	A→G	24.2%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,891	G→C	23.4%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,893	C→G	25.5%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,896	C→T	23.8%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,900	C→G	24.0%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,904	C→T	26.9%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,906	C→T	26.2%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,945	C→A	41.9%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,950	C→T	46.1%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,951	A→G	45.6%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,961	T→C	41.6%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,967	Δ1 bp	46.9%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,995,072	G→A	8.2%	intergenic (+144/+33)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	5,995,074	T→A	8.5%	intergenic (+146/+31)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	5,995,076	T→C	9.1%	intergenic (+148/+29)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	5,997,245:1	+G	23.7%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,250	Δ1 bp	22.5%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,002,474	A→T	10.9%	intergenic (‑118/+28)	amaA ← / ← amaB	L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,005,029	G→C	11.6%	intergenic (+11/‑165)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,043	T→G	21.5%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,050	G→C	25.6%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,053	A→T	26.4%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,056	G→C	27.7%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,006,613	T→G	18.3%	intergenic (+25/+74)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,006,614	C→A	17.4%	intergenic (+26/+73)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,037,521	C→T	16.0%	G191G (GGC→GGT)	argB →	acetylglutamate kinase
RA	6,040,850	T→A	12.5%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,051,724	C→A	10.7%	intergenic (+17/‑40)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,051,725	C→G	9.7%	intergenic (+18/‑39)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,051,726	T→G	9.7%	intergenic (+19/‑38)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,071,939	C→G	12.5%	L214F (TTG→TTC)	pstB‑II ←	phosphate ABC transporter ATP‑binding protein
RA	6,089,472	G→T	13.3%	D199Y (GAC→TAC)	potF‑IV →	putrescine‑binding protein
RA	6,127,218	C→G	11.8%	V241V (GTG→GTC) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,219	A→T	11.8%	V241E (GTG→GAG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,220	C→G	11.8%	V241L (GTG→CTG) ‡	PP_5375 ←	LysR family transcriptional regulator
RA	6,129,226	C→T	12.8%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,229	A→T	13.5%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,232	A→G	13.5%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,242	G→T	14.5%	intergenic (+48/+19)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,138,499	T→A	9.9%	F300I (TTC→ATC) ‡	czcC →	CzcC family metal RND transporter outer membrane protein
RA	6,138,500	T→A	9.5%	F300Y (TTC→TAC) ‡	czcC →	CzcC family metal RND transporter outer membrane protein
RA	6,164,793	C→A	11.8%	G182G (GGG→GGT)	PP_5405 ←	transposase

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171348–176319	176319	1–4972	8 [7]	[7] 9	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176651–181686	181686	1–5036	8 [7]	[6] 8	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	1131753	1131839	87	8 [7]	[7] 9	PP_0992	hypothetical protein
*	*	÷	NC_002947	4808205	4808218	14	33 [0]	[0] 31	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 25750	22 (0.690)	6 (0.210)	6/228	NT	22.5%	intergenic (+180/‑131)	PP_0020/PP_0021	hypothetical protein/hypothetical protein
	?	NC_002947	= 25768	21 (0.720)					intergenic (+198/‑113)	PP_0020/PP_0021	hypothetical protein/hypothetical protein
*	?	NC_002947	100443 =	24 (0.760)	5 (0.180)	4/214	NT	18.6%	intergenic (‑35/+87)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	100525 =	23 (0.840)					intergenic (‑117/+5)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	147818 =	33 (1.040)	3 (0.100)	3/236	NT	9.6%	coding (272/636 nt)	PP_0139	lipoprotein
	?	NC_002947	147865 =	25 (0.830)					coding (225/636 nt)	PP_0139	lipoprotein
*	?	NC_002947	= 150270	29 (0.920)	3 (0.100)	3/240	NT	9.7%	coding (680/1134 nt)	PP_0142	ABC transporter permease
	?	NC_002947	= 150297	28 (0.910)					coding (653/1134 nt)	PP_0142	ABC transporter permease
*	?	NC_002947	= 173222	NA (NA)	3 (0.100)	3/240	NT	NA	noncoding (20/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 173229	NA (NA)					noncoding (27/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 203745	18 (0.570)	15 (0.490)	6/238	NT	46.5%	coding (9251/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 207772	NA (NA)					coding (13278/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 204937	21 (0.660)	4 (0.130)	4/238	NT	14.2%	coding (10443/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 211590	28 (0.920)					coding (17096/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 215034	NA (NA)	5 (0.160) +C	3/246	NT	NA	coding (20540/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 215712	NA (NA)					coding (21218/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 228165	20 (0.630)	5 (0.160)	6/238	NT	18.8%	coding (991/2088 nt)	PP_0176	putative efflux transporter
	?	NC_002947	= 228187	24 (0.790)					coding (1013/2088 nt)	PP_0176	putative efflux transporter
*	?	NC_002947	235331 =	29 (0.920)	11 (0.400)	10/216	NT	31.8%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	22 (0.800)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	254680 =	32 (1.010)	8 (0.270)	7/236	NT	22.1%	coding (437/1731 nt)	PP_0203	dipeptidase
	?	NC_002947	254712 =	26 (0.860)					coding (405/1731 nt)	PP_0203	dipeptidase
*	?	NC_002947	= 318094	34 (1.070)	3 (0.100)	3/226	NT	9.4%	coding (1650/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	= 318134	27 (0.940)					coding (1610/1815 nt)	PP_0264	sensor histidine kinase
*	?	NC_002947	342930 =	43 (1.360)	3 (0.100)	3/232	NT	7.4%	intergenic (+58/+74)	gabP‑I/PP_5439	gamma‑aminobutyrate permease/hypothetical protein
	?	NC_002947	342979 =	35 (1.180)					intergenic (+107/+25)	gabP‑I/PP_5439	gamma‑aminobutyrate permease/hypothetical protein
*	?	NC_002947	350416 =	27 (0.850)	6 (0.200)	6/234	NT	18.9%	coding (459/633 nt)	hisB	imidazoleglycerol‑phosphate dehydratase
	?	NC_002947	350442 =	26 (0.870)					coding (485/633 nt)	hisB	imidazoleglycerol‑phosphate dehydratase
*	?	NC_002947	364569 =	61 (1.930)	6 (0.210)	5/226	NT	10.8%	intergenic (‑33/+91)	PP_0303/caiX	dehydrocarnitine cleavage enzyme/carnitine uptake ABC transporter substrate‑binding protein
	?	NC_002947	364652 =	44 (1.520)					intergenic (‑116/+8)	PP_0303/caiX	dehydrocarnitine cleavage enzyme/carnitine uptake ABC transporter substrate‑binding protein
*	?	NC_002947	= 430692	43 (1.360)	5 (0.160)	5/240	NT	11.3%	coding (1625/1938 nt)	PP_0354	CBS domain‑containing protein
	?	NC_002947	= 430723	37 (1.210)					coding (1594/1938 nt)	PP_0354	CBS domain‑containing protein
*	?	NC_002947	433231 =	31 (0.980)	3 (0.100)	3/238	NT	7.9%	coding (1972/2178 nt)	glcB	malate synthase G
	?	NC_002947	433287 =	40 (1.320)					coding (1916/2178 nt)	glcB	malate synthase G
*	?	NC_002947	447203 =	36 (1.140)	4 (0.160)	4/202	NT	13.7%	intergenic (+80/‑222)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
	?	NC_002947	447307 =	21 (0.810)					intergenic (+184/‑118)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
*	?	NC_002947	482447 =	29 (0.920)	3 (0.100)	3/226	NT	10.3%	intergenic (‑84/+72)	PP_0396/yeaG	hypothetical protein/protein kinase
	?	NC_002947	482497 =	26 (0.900)					intergenic (‑134/+22)	PP_0396/yeaG	hypothetical protein/protein kinase
*	?	NC_002947	497681 =	35 (1.110)	3 (0.100)	3/238	NT	7.5%	coding (1550/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	497744 =	40 (1.320)					coding (1613/2388 nt)	PP_0409	two‑component system sensor histidine kinase
*	?	NC_002947	521072 =	28 (0.880)	3 (0.100)	3/234	NT	9.3%	coding (227/1092 nt)	anmK	anhydro‑N‑acetylmuramic acid kinase
	?	NC_002947	521118 =	32 (1.070)					coding (181/1092 nt)	anmK	anhydro‑N‑acetylmuramic acid kinase
*	?	NC_002947	= 594773	44 (1.390)	6 (0.200)	6/240	NT	13.1%	intergenic (‑9/+118)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
	?	NC_002947	= 594859	37 (1.210)					intergenic (‑95/+32)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
*	?	NC_002947	614270 =	45 (1.420)	8 (0.340)	5/186	NT	25.1%	intergenic (‑86/+92)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
	?	NC_002947	614348 =	14 (0.590)					intergenic (‑164/+14)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
*	?	NC_002947	636792 =	27 (0.850)	5 (0.160)	5/238	NT	16.7%	coding (1013/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
	?	NC_002947	636825 =	24 (0.790)					coding (1046/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
*	?	NC_002947	= 652785	29 (0.920)	22 (0.830)	15/208	NT	64.4%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808204	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
*	?	NC_002947	832319 =	40 (1.260)	4 (0.130)	4/234	NT	10.3%	coding (79/1098 nt)	PP_0716	HlyD family secretion protein
	?	NC_002947	832385 =	32 (1.070)					coding (145/1098 nt)	PP_0716	HlyD family secretion protein
*	?	NC_002947	= 911382	26 (0.820)	4 (0.130)	4/238	NT	12.3%	coding (1887/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
	?	NC_002947	= 911420	32 (1.050)					coding (1925/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
*	?	NC_002947	= 938458	43 (1.360)	3 (0.100)	3/232	NT	7.4%	coding (7167/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 938510	35 (1.180)					coding (7115/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	958597 =	36 (1.140)	3 (0.100)	3/240	NT	7.8%	coding (49/564 nt)	PP_0820	acetyltransferase
	?	NC_002947	958648 =	36 (1.170)					coding (100/564 nt)	PP_0820	acetyltransferase
*	?	NC_002947	= 996920	31 (0.980)	9 (0.310)	7/228	NT	21.8%	coding (679/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
	?	NC_002947	= 996935	36 (1.240)					coding (664/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
*	?	NC_002947	1012761 =	33 (1.040)	4 (0.130)	4/240	NT	11.3%	coding (1170/1584 nt)	prfC	peptide chain release factor 3
	?	NC_002947	1012784 =	31 (1.010)					coding (1193/1584 nt)	prfC	peptide chain release factor 3
*	?	NC_002947	= 1021643	34 (1.070)	5 (0.170)	5/234	NT	14.1%	coding (347/1011 nt)	dppB	dipeptide ABC transporter permease
	?	NC_002947	= 1021694	29 (0.970)					coding (296/1011 nt)	dppB	dipeptide ABC transporter permease
*	?	NC_002947	1022041 =	37 (1.170)	6 (0.200)	6/234	NT	14.3%	intergenic (‑52/+40)	dppB/dppA‑I	dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1022070 =	37 (1.240)					intergenic (‑81/+11)	dppB/dppA‑I	dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1026146	45 (1.420)	7 (0.230)	6/242	NT	14.0%	coding (825/1593 nt)	dppA‑II	dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1026163	42 (1.360)					coding (808/1593 nt)	dppA‑II	dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1034745 =	24 (0.760)	3 (0.100)	3/238	NT	11.3%	coding (779/1158 nt)	PP_0892	phospholipase family protein
	?	NC_002947	1034785 =	24 (0.790)					coding (819/1158 nt)	PP_0892	phospholipase family protein
*	?	NC_002947	= 1114873	42 (1.330)	3 (0.100)	3/234	NT	7.4%	intergenic (‑62/+117)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	= 1114951	35 (1.170)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	= 1138550	34 (1.070)	5 (0.180)	5/220	NT	12.6%	intergenic (‑75/+90)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
	?	NC_002947	= 1138611	39 (1.390)					intergenic (‑136/+29)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
*	?	NC_002947	= 1156352	23 (0.730)	16 (0.630)	13/198	NT	44.2%	intergenic (+49/‑167)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	= 1156375	22 (0.870)					intergenic (+72/‑144)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
*	?	NC_002947	1194626 =	40 (1.260)	4 (0.130)	4/240	NT	10.6%	coding (759/1653 nt)	uxpA	lipoprotein UxpA
	?	NC_002947	1194658 =	29 (0.950)					coding (791/1653 nt)	uxpA	lipoprotein UxpA
*	?	NC_002947	1208314 =	38 (1.200)	3 (0.100)	3/236	NT	8.3%	coding (693/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	1208344 =	30 (1.000)					coding (663/3150 nt)	PP_1058	hypothetical protein
*	?	NC_002947	1256601 =	28 (0.880)	4 (0.130)	4/240	NT	12.9%	coding (937/1095 nt)	mrp	ATP‑dependent Fe‑S cluster transferase
	?	NC_002947	1256631 =	27 (0.880)					coding (967/1095 nt)	mrp	ATP‑dependent Fe‑S cluster transferase
*	?	NC_002947	= 1298079	NA (NA)	7 (0.230)	5/238	NT	NA	coding (1261/1329 nt)	PP_1133	transposase
	?	NC_002947	= 1298095	NA (NA)					coding (1277/1329 nt)	PP_1133	transposase
*	?	NC_002947	1352457 =	18 (0.570)	4 (0.130)	3/234	NT	16.0%	intergenic (‑94/+46)	PP_1178/nrdA	hypothetical protein/ribonucleoside‑diphosphate reductase subunit alpha
	?	NC_002947	1352497 =	25 (0.840)					intergenic (‑134/+6)	PP_1178/nrdA	hypothetical protein/ribonucleoside‑diphosphate reductase subunit alpha
*	?	NC_002947	1377535 =	39 (1.230)	4 (0.130)	4/236	NT	10.0%	coding (104/1293 nt)	PP_1201	hypothetical protein
	?	NC_002947	1377557 =	35 (1.160)					coding (82/1293 nt)	PP_1201	hypothetical protein
*	?	NC_002947	= 1385152	17 (0.540)	4 (0.140)	4/222	NT	19.9%	intergenic (‑116/+45)	proS/oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
	?	NC_002947	= 1385158	17 (0.600)					intergenic (‑122/+39)	proS/oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
*	?	NC_002947	1419553 =	22 (0.690)	4 (0.170)	4/184	NT	24.0%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419647 =	9 (0.380)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1419584	22 (0.690)	3 (0.130)	3/184	NT	19.2%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419614	9 (0.380)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1431552	33 (1.040)	5 (0.170)	5/234	NT	13.7%	coding (327/336 nt)	PP_1253	ArsR family transcriptional regulator
	?	NC_002947	= 1431565	32 (1.070)					coding (314/336 nt)	PP_1253	ArsR family transcriptional regulator
*	?	NC_002947	= 1432044	29 (0.920)	4 (0.140)	4/232	NT	12.1%	coding (117/1092 nt)	xenA	protein XenA
	?	NC_002947	= 1432069	31 (1.050)					coding (142/1092 nt)	xenA	protein XenA
*	?	NC_002947	= 1436023	20 (0.630)	3 (0.100)	3/236	NT	11.8%	intergenic (‑53/+100)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	= 1436102	26 (0.860)					intergenic (‑132/+21)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	1447792 =	47 (1.480)	4 (0.130)	4/238	NT	9.2%	coding (1883/2178 nt)	PP_1264	fusaric acid resistance protein
	?	NC_002947	1447836 =	34 (1.120)					coding (1927/2178 nt)	PP_1264	fusaric acid resistance protein
*	?	NC_002947	1449446 =	20 (0.630)	7 (0.230)	7/240	NT	24.8%	coding (243/468 nt)	yhaV	toxin antitoxin system SohB(PrlF)‑YhaV toxin endoribonuclease
	?	NC_002947	1449472 =	23 (0.750)					coding (217/468 nt)	yhaV	toxin antitoxin system SohB(PrlF)‑YhaV toxin endoribonuclease
*	?	NC_002947	1473183 =	27 (0.850)	5 (0.170)	5/236	NT	13.6%	coding (1045/1317 nt)	algD	GDP‑mannose 6‑dehydrogenase
	?	NC_002947	1473227 =	38 (1.260)					coding (1001/1317 nt)	algD	GDP‑mannose 6‑dehydrogenase
*	?	NC_002947	1487013 =	22 (0.690)	4 (0.170)	3/188	NT	18.3%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487103 =	19 (0.790)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1487042	21 (0.660)	7 (0.290)	5/188	NT	28.6%	intergenic (+51/+79)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	= 1487072	19 (0.790)					intergenic (+81/+49)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1497637	33 (1.040)	4 (0.130)	3/234	NT	10.6%	coding (218/636 nt)	PP_1310	hypothetical protein
	?	NC_002947	= 1497672	36 (1.200)					coding (253/636 nt)	PP_1310	hypothetical protein
*	?	NC_002947	1499443 =	19 (0.600)	4 (0.160)	4/202	NT	18.4%	intergenic (+13/‑153)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	1499526 =	20 (0.780)					intergenic (+96/‑70)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	= 1499465	21 (0.660)	5 (0.190)	5/202	NT	21.2%	intergenic (+35/‑131)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1499502	20 (0.780)					intergenic (+72/‑94)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	1531788 =	37 (1.170)	3 (0.120)	3/200	NT	13.1%	coding (130/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	1531884 =	10 (0.390)					coding (34/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	= 1570468	27 (0.850)	9 (0.360)	7/196	NT	28.9%	intergenic (+34/‑154)	pcaF‑I/pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
	?	NC_002947	= 1570494	23 (0.920)					intergenic (+60/‑128)	pcaF‑I/pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
*	?	NC_002947	= 1666839	23 (0.730)	6 (0.220)	6/216	NT	20.0%	intergenic (‑69/‑202)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit
	?	NC_002947	= 1666868	28 (1.020)					intergenic (‑98/‑173)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit
*	?	NC_002947	= 1731232	13 (0.410)	4 (0.160)	4/192	NT	25.8%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731268	13 (0.530)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1781623	35 (1.110)	3 (0.100)	3/240	NT	8.7%	coding (2496/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	= 1781656	29 (0.950)					coding (2463/2703 nt)	glnD	uridylyltransferase
*	?	NC_002947	1838715 =	40 (1.260)	6 (0.200)	5/230	NT	13.0%	coding (496/606 nt)	PP_1644	NAD(P)H dehydrogenase
	?	NC_002947	1838752 =	43 (1.460)					coding (459/606 nt)	PP_1644	NAD(P)H dehydrogenase
*	?	NC_002947	= 1838723	41 (1.290)	6 (0.200)	6/230	NT	12.9%	coding (488/606 nt)	PP_1644	NAD(P)H dehydrogenase
	?	NC_002947	= 1838742	43 (1.460)					coding (469/606 nt)	PP_1644	NAD(P)H dehydrogenase
*	?	NC_002947	= 1858873	28 (0.880)	7 (0.230)	6/242	NT	20.5%	coding (2010/2259 nt)	PP_1661	dehydrogenase
	?	NC_002947	= 1858902	27 (0.870)					coding (2039/2259 nt)	PP_1661	dehydrogenase
*	?	NC_002947	= 1949558	28 (0.880)	4 (0.130)	4/238	NT	12.1%	coding (140/1746 nt)	PP_1749	acetyltransferase
	?	NC_002947	= 1949600	31 (1.020)					coding (98/1746 nt)	PP_1749	acetyltransferase
*	?	NC_002947	1949563 =	29 (0.920)	3 (0.100)	5/232	NT	10.1%	coding (135/1746 nt)	PP_1749	acetyltransferase
	?	NC_002947	1949591 =	26 (0.880)					coding (107/1746 nt)	PP_1749	acetyltransferase
*	?	NC_002947	1967188 =	18 (0.570)	6 (0.260)	6/182	NT	35.1%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967284 =	9 (0.390)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	2032853 =	NA (NA)	3 (0.100)	3/236	NT	61.2%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2032878 =	2 (0.060)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
*	?	NC_002947	= 2047300	26 (0.820)	4 (0.130)	4/238	NT	14.8%	coding (764/1197 nt)	PP_1820	benzoate transport protein
	?	NC_002947	= 2047339	21 (0.690)					coding (725/1197 nt)	PP_1820	benzoate transport protein
*	?	NC_002947	2048837 =	27 (0.850)	4 (0.150)	4/214	NT	19.9%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2048928 =	9 (0.330)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2050638	25 (0.790)	6 (0.270)	6/174	NT	25.8%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050674	17 (0.770)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	2057838 =	33 (1.040)	6 (0.200)	4/240	NT	12.4%	intergenic (+11/+117)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057936 =	53 (1.730)					intergenic (+109/+19)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	= 2130414	23 (0.730)	3 (0.100)	3/236	NT	9.9%	coding (1828/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	= 2130479	33 (1.100)					coding (1763/2496 nt)	fimD	type I pili subunit FimD
*	?	NC_002947	= 2295816	52 (1.640)	5 (0.160)	5/238	NT	10.4%	intergenic (+19/+114)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	= 2295903	36 (1.180)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	= 2296853	39 (1.230)	3 (0.100)	3/240	NT	7.1%	coding (3312/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	= 2296899	41 (1.340)					coding (3266/3645 nt)	sbcC	exonuclease subunit SbcC
*	?	NC_002947	= 2297219	23 (0.730)	4 (0.140)	4/230	NT	14.7%	coding (2946/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	= 2297232	25 (0.850)					coding (2933/3645 nt)	sbcC	exonuclease subunit SbcC
*	?	NC_002947	2298183 =	27 (0.850)	4 (0.130)	4/234	NT	13.2%	coding (1982/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	2298208 =	27 (0.900)					coding (1957/3645 nt)	sbcC	exonuclease subunit SbcC
*	?	NC_002947	2310567 =	37 (1.170)	4 (0.140)	3/228	NT	11.3%	coding (275/1311 nt)	PP_2033	hypothetical protein
	?	NC_002947	2310624 =	29 (1.000)					coding (332/1311 nt)	PP_2033	hypothetical protein
*	?	NC_002947	2311645 =	26 (0.820)	3 (0.100)	3/232	NT	11.0%	coding (1254/1260 nt)	PP_2034	membrane protein
	?	NC_002947	2311674 =	24 (0.810)					coding (1225/1260 nt)	PP_2034	membrane protein
*	?	NC_002947	2336712 =	28 (0.880)	4 (0.140)	4/230	NT	14.0%	coding (71/204 nt)	PP_5500	hypothetical protein
	?	NC_002947	2336750 =	23 (0.780)					coding (33/204 nt)	PP_5500	hypothetical protein
*	?	NC_002947	2379610 =	30 (0.950)	3 (0.100)	3/242	NT	9.2%	intergenic (+22/‑68)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX
	?	NC_002947	2379652 =	30 (0.970)					intergenic (+64/‑26)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX
*	?	NC_002947	= 2418440	35 (1.110)	3 (0.100)	3/238	NT	8.3%	coding (1432/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2418467	33 (1.090)					coding (1459/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	2447872 =	31 (0.980)	4 (0.130)	4/238	NT	13.0%	coding (3254/3318 nt)	PP_2146	SNF2/RAD54 family helicase
	?	NC_002947	2447915 =	24 (0.790)					coding (3211/3318 nt)	PP_2146	SNF2/RAD54 family helicase
*	?	NC_002947	2486683 =	40 (1.260)	6 (0.200)	5/232	NT	15.1%	coding (1232/1359 nt)	spuC‑I	polyamine:pyruvate transaminase
	?	NC_002947	2486716 =	30 (1.010)					coding (1265/1359 nt)	spuC‑I	polyamine:pyruvate transaminase
*	?	NC_002947	= 2575777	46 (1.450)	3 (0.100)	3/238	NT	6.4%	coding (911/1689 nt)	PP_2258	sensory box protein
	?	NC_002947	= 2575803	43 (1.420)					coding (937/1689 nt)	PP_2258	sensory box protein
*	?	NC_002947	= 2651871	36 (1.140)	4 (0.130)	4/240	NT	11.6%	coding (590/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	NC_002947	= 2651909	26 (0.850)					coding (552/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
*	?	NC_002947	= 2675937	41 (1.290)	7 (0.230)	6/236	NT	15.2%	coding (241/1080 nt)	PP_2344	hypothetical protein
	?	NC_002947	= 2675942	39 (1.290)					coding (236/1080 nt)	PP_2344	hypothetical protein
*	?	NC_002947	2719748 =	28 (0.880)	5 (0.170)	5/236	NT	15.7%	coding (51/609 nt)	PP_2379	cytochrome oxidase biogenesis protein
	?	NC_002947	2719779 =	27 (0.900)					coding (82/609 nt)	PP_2379	cytochrome oxidase biogenesis protein
*	?	NC_002947	2726286 =	20 (0.630)	6 (0.200)	6/236	NT	20.7%	coding (413/1083 nt)	PP_2387	hypothetical protein
	?	NC_002947	2726323 =	27 (0.900)					coding (376/1083 nt)	PP_2387	hypothetical protein
*	?	NC_002947	2747292 =	29 (0.920)	3 (0.100)	3/240	NT	10.0%	coding (520/1287 nt)	PP_2402	sensor histidine kinase
	?	NC_002947	2747314 =	26 (0.850)					coding (498/1287 nt)	PP_2402	sensor histidine kinase
*	?	NC_002947	= 2761830	39 (1.230)	3 (0.100)	3/242	NT	7.2%	coding (368/630 nt)	PP_2415	GNAT family acetyltransferase
	?	NC_002947	= 2761862	39 (1.260)					coding (400/630 nt)	PP_2415	GNAT family acetyltransferase
*	?	NC_002947	2775344 =	34 (1.070)	6 (0.200)	5/236	NT	15.7%	coding (211/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	2775369 =	32 (1.060)					coding (186/1353 nt)	PP_5521	hypothetical protein
*	?	NC_002947	= 2807755	21 (0.660)	4 (0.130)	4/238	NT	14.8%	coding (68/213 nt)	PP_2461	hypothetical protein
	?	NC_002947	= 2807768	26 (0.860)					coding (55/213 nt)	PP_2461	hypothetical protein
*	?	NC_002947	= 2837421	25 (0.790)	5 (0.160)	5/238	NT	16.4%	coding (954/1101 nt)	PP_2489	xenobiotic reductase
	?	NC_002947	= 2837450	27 (0.890)					coding (925/1101 nt)	PP_2489	xenobiotic reductase
*	?	NC_002947	2876327 =	39 (1.230)	4 (0.130)	4/236	NT	11.1%	coding (77/258 nt)	PP_2530	hypothetical protein
	?	NC_002947	2876371 =	27 (0.900)					coding (33/258 nt)	PP_2530	hypothetical protein
*	?	NC_002947	= 2910796	19 (0.600)	3 (0.100)	3/228	NT	11.9%	intergenic (‑316/‑228)	aprDA/PP_2561	alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin
	?	NC_002947	= 2910843	27 (0.930)					intergenic (‑363/‑181)	aprDA/PP_2561	alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin
*	?	NC_002947	2933568 =	34 (1.070)	2 (0.070)	4/230	NT	6.3%	coding (577/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein
	?	NC_002947	2933595 =	28 (0.950)					coding (550/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein
*	?	NC_002947	2981446 =	37 (1.170)	3 (0.100)	3/236	NT	7.7%	coding (962/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	2981502 =	37 (1.230)					coding (906/1734 nt)	PP_2607	hypothetical protein
*	?	NC_002947	= 3018222	35 (1.110)	4 (0.140)	3/232	NT	11.8%	coding (2102/2283 nt)	bcsB	cellulose synthase and translocator subunit
	?	NC_002947	= 3018262	27 (0.910)					coding (2142/2283 nt)	bcsB	cellulose synthase and translocator subunit
*	?	NC_002947	= 3038172	30 (0.950)	4 (0.140)	4/232	NT	11.9%	coding (401/1143 nt)	gbd	4‑hydroxybutyrate dehydrogenase
	?	NC_002947	= 3038216	31 (1.050)					coding (445/1143 nt)	gbd	4‑hydroxybutyrate dehydrogenase
*	?	NC_002947	= 3219398	38 (1.200)	3 (0.100)	3/230	NT	7.6%	intergenic (‑98/+80)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein
	?	NC_002947	= 3219419	38 (1.290)					intergenic (‑119/+59)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein
*	?	NC_002947	= 3262453	34 (1.070)	4 (0.130)	4/240	NT	10.8%	coding (279/567 nt)	PP_2860	nicotinamide mononucleotide transporter
	?	NC_002947	= 3262489	33 (1.080)					coding (243/567 nt)	PP_2860	nicotinamide mononucleotide transporter
*	?	NC_002947	3276294 =	22 (0.690)	5 (0.170)	5/236	NT	21.8%	coding (265/312 nt)	PP_2874	hypothetical protein
	?	NC_002947	3276334 =	15 (0.500)					coding (305/312 nt)	PP_2874	hypothetical protein
*	?	NC_002947	= 3276854	28 (0.880)	6 (0.190)	6/246	NT	18.0%	intergenic (‑116/+167)	PP_2875/ampC	hypothetical protein/beta‑lactamase
	?	NC_002947	= 3276884	27 (0.860)					intergenic (‑146/+137)	PP_2875/ampC	hypothetical protein/beta‑lactamase
*	?	NC_002947	3350657 =	29 (0.920)	4 (0.130)	4/236	NT	12.4%	coding (1111/1404 nt)	PP_2945	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3350699 =	29 (0.960)					coding (1153/1404 nt)	PP_2945	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	3352188 =	41 (1.290)	3 (0.100)	3/236	NT	8.0%	intergenic (+35/+107)	PP_2947/PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
	?	NC_002947	3352244 =	30 (1.000)					intergenic (+91/+51)	PP_2947/PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
*	?	NC_002947	3374002 =	29 (0.920)	3 (0.100)	3/240	NT	9.1%	coding (245/300 nt)	PP_2972	hypothetical protein
	?	NC_002947	3374043 =	32 (1.040)					coding (286/300 nt)	PP_2972	hypothetical protein
*	?	NC_002947	3417655 =	24 (0.760)	3 (0.100)	3/244	NT	11.0%	coding (429/804 nt)	PP_3030	hypothetical protein
	?	NC_002947	3417679 =	25 (0.800)					coding (405/804 nt)	PP_3030	hypothetical protein
*	?	NC_002947	= 3437020	44 (1.390)	4 (0.130)	4/238	NT	7.7%	coding (103/879 nt)	PP_3056	tail fiber protein
	?	NC_002947	= 3437045	54 (1.780)					coding (128/879 nt)	PP_3056	tail fiber protein
*	?	NC_002947	3482829 =	31 (0.980)	5 (0.160)	4/240	NT	14.1%	coding (3138/3804 nt)	PP_3091	membrane protein
	?	NC_002947	3482877 =	31 (1.010)					coding (3090/3804 nt)	PP_3091	membrane protein
*	?	NC_002947	3632310 =	27 (0.850)	4 (0.130)	4/238	NT	13.1%	coding (1161/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	3632380 =	27 (0.890)					coding (1231/1368 nt)	PP_5590	hypothetical protein
*	?	NC_002947	= 3632487	21 (0.660)	3 (0.100)	3/240	NT	13.2%	coding (1338/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	= 3632505	19 (0.620)					coding (1356/1368 nt)	PP_5590	hypothetical protein
*	?	NC_002947	3676903 =	40 (1.260)	8 (0.270)	8/236	NT	16.3%	intergenic (‑15/‑138)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	3676936 =	44 (1.460)					intergenic (‑48/‑105)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
*	?	NC_002947	= 3679054	32 (1.010)	4 (0.130)	4/240	NT	11.4%	coding (108/510 nt)	PP_3243	GNAT family acetyltransferase
	?	NC_002947	= 3679064	31 (1.010)					coding (98/510 nt)	PP_3243	GNAT family acetyltransferase
*	?	NC_002947	3712434 =	38 (1.200)	3 (0.100)	3/236	NT	9.8%	coding (605/990 nt)	paaA	ring 1,2‑phenylacetyl‑CoA epoxidase subunit alpha
	?	NC_002947	3712486 =	19 (0.630)					coding (553/990 nt)	paaA	ring 1,2‑phenylacetyl‑CoA epoxidase subunit alpha
*	?	NC_002947	3737035 =	29 (0.920)	4 (0.130)	4/238	NT	12.7%	coding (1889/3093 nt)	PP_3302	RND family transporter
	?	NC_002947	3737054 =	27 (0.890)					coding (1908/3093 nt)	PP_3302	RND family transporter
*	?	NC_002947	3762255 =	34 (1.070)	3 (0.100)	3/238	NT	8.7%	coding (1560/2091 nt)	PP_3325	ferric siderophore receptor
	?	NC_002947	3762272 =	30 (0.990)					coding (1577/2091 nt)	PP_3325	ferric siderophore receptor
*	?	NC_002947	= 3807589	38 (1.200)	4 (0.130)	4/238	NT	10.3%	coding (2162/2544 nt)	PP_3364	two‑component system response regulator
	?	NC_002947	= 3807615	33 (1.090)					coding (2188/2544 nt)	PP_3364	two‑component system response regulator
*	?	NC_002947	= 3810649	24 (0.760)	4 (0.130)	4/236	NT	12.9%	coding (723/882 nt)	PP_3366	LysR family transcriptional regulator
	?	NC_002947	= 3810703	31 (1.030)					coding (777/882 nt)	PP_3366	LysR family transcriptional regulator
*	?	NC_002947	= 3873412	43 (1.360)	5 (0.170)	5/232	NT	11.6%	coding (772/1452 nt)	PP_3421	sensor histidine kinase
	?	NC_002947	= 3873427	36 (1.220)					coding (757/1452 nt)	PP_3421	sensor histidine kinase
*	?	NC_002947	= 3884426	14 (0.440)	4 (0.130)	4/238	NT	20.8%	coding (267/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	= 3884442	17 (0.560)					coding (283/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
*	?	NC_002947	3921849 =	35 (1.110)	3 (0.100)	3/226	NT	9.0%	intergenic (‑40/+100)	acs/peaD	acyl‑CoA synthetase/quinohemoprotein amine dehydrogenase subunit beta
	?	NC_002947	3921936 =	29 (1.010)					intergenic (‑127/+13)	acs/peaD	acyl‑CoA synthetase/quinohemoprotein amine dehydrogenase subunit beta
*	?	NC_002947	3928401 =	40 (1.260)	6 (0.210)	6/220	NT	15.7%	intergenic (+33/‑107)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	3928446 =	29 (1.030)					intergenic (+78/‑62)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
*	?	NC_002947	3930704 =	26 (0.820)	3 (0.100)	3/240	NT	12.7%	coding (448/1293 nt)	PP_5603	FAD dependent oxidoreductase
	?	NC_002947	3930745 =	16 (0.520)					coding (407/1293 nt)	PP_5603	FAD dependent oxidoreductase
*	?	NC_002947	= 3950580	51 (1.610)	4 (0.130)	4/234	NT	7.3%	coding (501/1491 nt)	PP_3486	cytochrome c
	?	NC_002947	= 3950602	53 (1.770)					coding (479/1491 nt)	PP_3486	cytochrome c
*	?	NC_002947	= 3976261	50 (1.580)	8 (0.260)	5/240	NT	15.6%	coding (651/1014 nt)	PP_3506	magnesium chelatase subunit ChII
	?	NC_002947	= 3976311	38 (1.240)					coding (601/1014 nt)	PP_3506	magnesium chelatase subunit ChII
*	?	NC_002947	4016697 =	23 (0.730)	4 (0.140)	4/226	NT	13.6%	coding (555/1410 nt)	PP_3544	GntR family transcriptional regulator
	?	NC_002947	4016768 =	30 (1.040)					coding (626/1410 nt)	PP_3544	GntR family transcriptional regulator
*	?	NC_002947	4022323 =	35 (1.110)	7 (0.240)	4/232	NT	19.0%	coding (27/942 nt)	PP_3547	NAD(P)‑binding oxidoreductase
	?	NC_002947	4022416 =	27 (0.910)					intergenic (‑67/+601)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	4069517 =	32 (1.010)	5 (0.160)	4/238	NT	13.6%	coding (2686/3099 nt)	mdtB	multidrug transporter membrane protein
	?	NC_002947	4069541 =	33 (1.090)					coding (2662/3099 nt)	mdtB	multidrug transporter membrane protein
*	?	NC_002947	= 4119119	29 (0.920)	4 (0.130)	4/242	NT	10.9%	coding (1765/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
	?	NC_002947	= 4119138	37 (1.200)					coding (1784/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
*	?	NC_002947	4127342 =	23 (0.730)	4 (0.140)	4/232	NT	15.8%	coding (63/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
	?	NC_002947	4127381 =	21 (0.710)					coding (24/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
*	?	NC_002947	= 4129658	25 (0.790)	3 (0.100)	3/234	NT	11.4%	coding (231/942 nt)	PP_3633	ArgC‑like N‑acetyl‑gamma‑glutamyl‑phosphate reductase
	?	NC_002947	= 4129681	23 (0.770)					coding (254/942 nt)	PP_3633	ArgC‑like N‑acetyl‑gamma‑glutamyl‑phosphate reductase
*	?	NC_002947	4141033 =	33 (1.040)	6 (0.200)	6/238	NT	14.5%	intergenic (+20/‑49)	PP_5609/PP_3645	hypothetical protein/L‑proline amide hydrolase
	?	NC_002947	4141061 =	39 (1.280)					intergenic (+48/‑21)	PP_5609/PP_3645	hypothetical protein/L‑proline amide hydrolase
*	?	NC_002947	4157741 =	33 (1.040)	4 (0.140)	4/232	NT	11.0%	coding (182/888 nt)	PP_3660	LysR family transcriptional regulator
	?	NC_002947	4157772 =	34 (1.150)					coding (151/888 nt)	PP_3660	LysR family transcriptional regulator
*	?	NC_002947	4169123 =	28 (0.880)	3 (0.100)	3/238	NT	9.9%	coding (814/2256 nt)	katG	catalase‑peroxidase
	?	NC_002947	4169137 =	28 (0.920)					coding (800/2256 nt)	katG	catalase‑peroxidase
*	?	NC_002947	= 4172448	40 (1.260)	5 (0.160)	5/238	NT	11.6%	coding (38/825 nt)	PP_3671	aldo/keto reductase family oxidoreductase
	?	NC_002947	= 4172479	38 (1.250)					coding (69/825 nt)	PP_3671	aldo/keto reductase family oxidoreductase
*	?	NC_002947	= 4243583	40 (1.260)	5 (0.170)	5/234	NT	12.4%	coding (199/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase
	?	NC_002947	= 4243607	33 (1.100)					coding (175/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase
*	?	NC_002947	= 4259961	25 (0.790)	4 (0.130)	4/240	NT	13.1%	coding (396/1059 nt)	PP_3733	hydrolase
	?	NC_002947	= 4259981	29 (0.950)					coding (376/1059 nt)	PP_3733	hydrolase
*	?	NC_002947	= 4280116	44 (1.390)	4 (0.130)	4/240	NT	9.2%	coding (1272/1434 nt)	PP_3750	GntR family transcriptional regulator
	?	NC_002947	= 4280140	36 (1.170)					coding (1296/1434 nt)	PP_3750	GntR family transcriptional regulator
*	?	NC_002947	4334176 =	51 (1.610)	4 (0.130)	4/236	NT	7.0%	coding (65/1053 nt)	yaiW	lipoprotein
	?	NC_002947	4334214 =	58 (1.920)					coding (27/1053 nt)	yaiW	lipoprotein
*	?	NC_002947	4419786 =	22 (0.690)	3 (0.100)	3/232	NT	14.1%	coding (509/552 nt)	PP_3910	hypothetical protein
	?	NC_002947	4419828 =	16 (0.540)					coding (551/552 nt)	PP_3910	hypothetical protein
*	?	NC_002947	= 4473844	19 (0.600)	7 (0.240)	7/232	NT	29.3%	intergenic (+14/+200)	PP_3963/PP_3964	hypothetical protein/transposase
	?	NC_002947	= 4473854	16 (0.540)					intergenic (+24/+190)	PP_3963/PP_3964	hypothetical protein/transposase
*	?	NC_002947	= 4483589	44 (1.390)	4 (0.130)	4/234	NT	8.7%	intergenic (‑83/‑125)	PP_3975/PP_3976	hypothetical protein/isochorismatase family hydrolase
	?	NC_002947	= 4483615	42 (1.410)					intergenic (‑109/‑99)	PP_3975/PP_3976	hypothetical protein/isochorismatase family hydrolase
*	?	NC_002947	4586063 =	6 (0.190)	3 (0.140)	3/172	NT	37.1%	intergenic (+102/+115)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586167 =	6 (0.270)					intergenic (+206/+11)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4586100	6 (0.190)	9 (0.410)	9/172	NT	63.9%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	6 (0.270)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4647603 =	18 (0.570)	4 (0.180)	4/170	NT	29.3%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4647711 =	7 (0.320)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4662079 =	27 (0.850)	3 (0.100)	3/232	NT	13.3%	coding (897/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
	?	NC_002947	4662171 =	14 (0.470)					coding (989/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
*	?	NC_002947	4668405 =	28 (0.880)	3 (0.100)	3/232	NT	9.5%	coding (231/1533 nt)	nuoM	NADH‑quinone oxidoreductase subunit M
	?	NC_002947	4668448 =	31 (1.050)					coding (274/1533 nt)	nuoM	NADH‑quinone oxidoreductase subunit M
*	?	NC_002947	4710366 =	42 (1.330)	6 (0.200)	6/236	NT	13.2%	coding (160/348 nt)	PP_4168	hypothetical protein
	?	NC_002947	4710383 =	39 (1.290)					coding (143/348 nt)	PP_4168	hypothetical protein
*	?	NC_002947	4726117 =	49 (1.550)	4 (0.130)	4/240	NT	7.8%	coding (1311/1314 nt)	brnQ	branched‑chain amino acid transporter
	?	NC_002947	4726160 =	47 (1.530)					coding (1268/1314 nt)	brnQ	branched‑chain amino acid transporter
*	?	NC_002947	= 4727775	41 (1.290)	8 (0.270)	7/236	NT	16.5%	intergenic (‑348/+56)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
	?	NC_002947	= 4727812	42 (1.390)					intergenic (‑385/+19)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
*	?	NC_002947	4748399 =	39 (1.230)	4 (0.130)	4/240	NT	9.4%	coding (58/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
	?	NC_002947	4748429 =	39 (1.270)					coding (88/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
*	?	NC_002947	= 4782055	23 (0.730)	4 (0.130)	4/236	NT	12.5%	coding (5304/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4782115	34 (1.130)					coding (5244/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4782082	25 (0.790)	5 (0.160)	5/240	NT	16.3%	coding (5277/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4782102	27 (0.880)					coding (5257/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4785373	31 (0.980)	3 (0.100)	3/234	NT	8.7%	coding (1986/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4785401	34 (1.140)					coding (1958/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4803082	31 (0.980)	5 (0.170)	5/234	NT	13.3%	coding (277/972 nt)	PP_4231	xanthine dehydrogenase accessory factor
	?	NC_002947	= 4803104	36 (1.200)					coding (255/972 nt)	PP_4231	xanthine dehydrogenase accessory factor
*	?	NC_002947	4808219 =	0 (0.000)	24 (1.060)	20/178	NT	73.8%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988991	17 (0.750)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4808934 =	48 (1.520)	4 (0.130)	4/236	NT	8.9%	coding (444/1716 nt)	dsbD‑II	thiol/disulfide interchange protein 2
	?	NC_002947	4808965 =	36 (1.190)					coding (475/1716 nt)	dsbD‑II	thiol/disulfide interchange protein 2
*	?	NC_002947	= 4884432	41 (1.290)	6 (0.210)	5/222	NT	14.5%	intergenic (+53/+76)	PP_4293/yedI	hypothetical protein/inner membrane protein
	?	NC_002947	= 4884469	34 (1.200)					intergenic (+90/+39)	PP_4293/yedI	hypothetical protein/inner membrane protein
*	?	NC_002947	= 4893624	56 (1.770)	7 (0.280)	7/194	NT	13.0%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4893649	50 (2.020)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4896423 =	49 (1.550)	9 (0.340)	7/206	NT	17.7%	intergenic (+11/‑197)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	4896512 =	43 (1.630)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	4960363 =	23 (0.730)	3 (0.100)	3/240	NT	11.9%	coding (153/1779 nt)	fliF	flagellar M‑ring protein
	?	NC_002947	4960396 =	22 (0.720)					coding (120/1779 nt)	fliF	flagellar M‑ring protein
*	?	NC_002947	5083241 =	34 (1.070)	3 (0.100)	3/240	NT	9.1%	coding (1073/2625 nt)	alaS	alanine‑‑tRNA ligase
	?	NC_002947	5083266 =	27 (0.880)					coding (1048/2625 nt)	alaS	alanine‑‑tRNA ligase
*	?	NC_002947	= 5116432	26 (0.820)	4 (0.140)	4/232	NT	12.8%	coding (532/594 nt)	PP_4501	septation protein A
	?	NC_002947	= 5116448	30 (1.010)					coding (548/594 nt)	PP_4501	septation protein A
*	?	NC_002947	5162618 =	46 (1.450)	10 (0.400)	7/196	NT	27.6%	intergenic (+93/+108)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5162702 =	16 (0.640)					intergenic (+177/+24)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5174644 =	32 (1.010)	4 (0.130)	4/234	NT	11.9%	coding (384/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	5174705 =	29 (0.970)					coding (323/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
*	?	NC_002947	5178017 =	23 (0.730)	3 (0.100)	3/238	NT	12.5%	coding (16/1221 nt)	PP_4553	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5178057 =	20 (0.660)					coding (479/486 nt)	PP_4554	hypothetical protein
*	?	NC_002947	5201627 =	19 (0.600)	12 (0.540)	8/174	NT	54.1%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5201722 =	7 (0.320)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	= 5207742	19 (0.600)	3 (0.110)	3/222	NT	12.8%	intergenic (+32/+82)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 5207793	24 (0.850)					intergenic (+83/+31)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	= 5210282	27 (0.850)	4 (0.150)	4/216	NT	11.3%	intergenic (‑100/+78)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	= 5210341	39 (1.410)					intergenic (‑159/+19)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	= 5235995	52 (1.640)	4 (0.130)	4/238	NT	7.7%	coding (1281/2325 nt)	fecA	outer membrane ferric citrate porin
	?	NC_002947	= 5236067	46 (1.510)					coding (1353/2325 nt)	fecA	outer membrane ferric citrate porin
*	?	NC_002947	= 5243293	36 (1.140)	3 (0.100)	3/232	NT	8.6%	coding (1237/1302 nt)	hmgA	homogentisate 1,2‑dioxygenase
	?	NC_002947	= 5243311	30 (1.010)					coding (1219/1302 nt)	hmgA	homogentisate 1,2‑dioxygenase
*	?	NC_002947	5302372 =	54 (1.710)	4 (0.130)	4/240	NT	6.9%	coding (1449/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
	?	NC_002947	5302407 =	55 (1.790)					coding (1414/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
*	?	NC_002947	= 5395374	32 (1.010)	3 (0.100)	3/228	NT	8.8%	coding (2268/2364 nt)	hsdR	type I restriction modification system endonuclease
	?	NC_002947	= 5395392	33 (1.130)					coding (2286/2364 nt)	hsdR	type I restriction modification system endonuclease
*	?	NC_002947	= 5421213	52 (1.640)	3 (0.100)	3/228	NT	6.3%	intergenic (‑67/+98)	PP_4760/PP_4761	alcohol dehydrogenase/haloacid dehalogenase‑like family hydrolase
	?	NC_002947	= 5421275	42 (1.440)					intergenic (‑129/+36)	PP_4760/PP_4761	alcohol dehydrogenase/haloacid dehalogenase‑like family hydrolase
*	?	NC_002947	= 5421959	35 (1.110)	3 (0.100)	3/240	NT	8.1%	coding (809/870 nt)	tesB	acyl‑CoA thioesterase II
	?	NC_002947	= 5421983	34 (1.110)					coding (785/870 nt)	tesB	acyl‑CoA thioesterase II
*	?	NC_002947	5430415 =	38 (1.200)	10 (0.340)	10/230	NT	21.2%	intergenic (‑49/+112)	PP_4769/PP_4770	hypothetical protein/hypothetical protein
	?	NC_002947	5430484 =	39 (1.330)					intergenic (‑118/+43)	PP_4769/PP_4770	hypothetical protein/hypothetical protein
*	?	NC_002947	5454757 =	15 (0.470)	22 (0.710)	19/244	NT	59.9%	intergenic (+39/+122)	PP_4791/PP_4792	transposase/hypothetical protein
	?	NC_002947	5545369 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 5506637	34 (1.070)	5 (0.210)	4/190	NT	15.1%	intergenic (+48/‑151)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506650	30 (1.240)					intergenic (+61/‑138)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
*	?	NC_002947	= 5537105	23 (0.730)	6 (0.240)	4/194	NT	22.2%	intergenic (+34/+69)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
	?	NC_002947	= 5537127	24 (0.970)					intergenic (+56/+47)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
*	?	NC_002947	5585727 =	33 (1.040)	5 (0.170)	4/236	NT	13.8%	coding (56/2259 nt)	parC	DNA topoisomerase IV subunit A
	?	NC_002947	5585764 =	31 (1.030)					coding (19/2259 nt)	parC	DNA topoisomerase IV subunit A
*	?	NC_002947	5594143 =	16 (0.510)	9 (0.370)	7/192	NT	40.6%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594236 =	14 (0.570)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5594170	17 (0.540)	9 (0.370)	7/192	NT	39.9%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594207	14 (0.570)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5660151	31 (0.980)	4 (0.130)	4/238	NT	11.6%	coding (1144/1191 nt)	metK	methionine adenosyltransferase
	?	NC_002947	= 5660166	31 (1.020)					coding (1159/1191 nt)	metK	methionine adenosyltransferase
*	?	NC_002947	= 5696404	26 (0.820)	3 (0.100)	3/238	NT	9.7%	coding (1072/1272 nt)	pyrC'	dihydroorotase‑like protein
	?	NC_002947	= 5696426	31 (1.020)					coding (1094/1272 nt)	pyrC'	dihydroorotase‑like protein
*	?	NC_002947	5698783 =	48 (1.520)	6 (0.220)	6/214	NT	14.6%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698866 =	29 (1.060)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	5721033 =	33 (1.040)	3 (0.100)	3/234	NT	8.3%	coding (1502/1944 nt)	PP_5021	methyl‑accepting chemotaxis transducer
	?	NC_002947	5721067 =	35 (1.170)					coding (1536/1944 nt)	PP_5021	methyl‑accepting chemotaxis transducer
*	?	NC_002947	5734099 =	36 (1.140)	4 (0.140)	4/218	NT	11.3%	intergenic (‑69/+88)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	5734152 =	31 (1.110)					intergenic (‑122/+35)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
*	?	NC_002947	= 5736939	31 (0.980)	4 (0.140)	3/232	NT	11.9%	coding (563/1674 nt)	hutU	urocanate hydratase
	?	NC_002947	= 5736952	30 (1.010)					coding (550/1674 nt)	hutU	urocanate hydratase
*	?	NC_002947	= 5742048	28 (0.880)	4 (0.130)	4/236	NT	11.7%	coding (162/597 nt)	PP_5039	hypothetical protein
	?	NC_002947	= 5742064	34 (1.130)					coding (146/597 nt)	PP_5039	hypothetical protein
*	?	NC_002947	= 5759491	22 (0.690)	9 (0.380)	7/184	NT	29.4%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759519	27 (1.150)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5816823	15 (0.470)	4 (0.130)	4/236	NT	20.9%	coding (577/624 nt)	PP_5092	NLP/P60 protein
	?	NC_002947	= 5816856	16 (0.530)					coding (610/624 nt)	PP_5092	NLP/P60 protein
*	?	NC_002947	= 5816927	17 (0.540)	4 (0.150)	4/212	NT	17.6%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816954	23 (0.850)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5827742 =	36 (1.140)	3 (0.100)	3/234	NT	8.6%	coding (599/711 nt)	mtgA	monofunctional biosynthetic peptidoglycan transglycosylase
	?	NC_002947	5827783 =	30 (1.000)					coding (640/711 nt)	mtgA	monofunctional biosynthetic peptidoglycan transglycosylase
*	?	NC_002947	= 5840670	23 (0.730)	4 (0.130)	6/234	NT	15.8%	intergenic (‑34/+2)	sseA/PP_5119	3‑mercaptopyruvate sulfurtransferase/TetR family transcriptional regulator
	?	NC_002947	= 5840679	21 (0.700)					coding (659/666 nt)	PP_5119	TetR family transcriptional regulator
*	?	NC_002947	= 5870345	42 (1.330)	7 (0.290)	6/190	NT	20.8%	intergenic (+50/+84)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5870380	21 (0.870)					intergenic (+85/+49)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	= 5877975	21 (0.660)	4 (0.130)	4/236	NT	16.3%	coding (67/903 nt)	PP_5151	hypothetical protein
	?	NC_002947	= 5878001	21 (0.700)					coding (41/903 nt)	PP_5151	hypothetical protein
*	?	NC_002947	5903827 =	46 (1.450)	4 (0.150)	4/216	NT	10.5%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5903887 =	28 (1.020)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	= 5914240	26 (0.820)	4 (0.160)	4/192	NT	17.7%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914280	17 (0.690)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5997921	31 (0.980)	4 (0.140)	4/226	NT	10.6%	coding (185/819 nt)	PP_5253	arylesterase
	?	NC_002947	= 5998017	39 (1.350)					coding (89/819 nt)	PP_5253	arylesterase
*	?	NC_002947	= 6006630	6 (0.190)	5 (0.220)	5/176	NT	39.6%	intergenic (+42/+57)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
	?	NC_002947	= 6006642	11 (0.490)					intergenic (+54/+45)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
*	?	NC_002947	6014745 =	23 (0.730)	4 (0.130)	4/236	NT	14.6%	coding (1076/1860 nt)	PP_5266	acetyl‑CoA hydrolase family protein
	?	NC_002947	6014776 =	25 (0.830)					coding (1045/1860 nt)	PP_5266	acetyl‑CoA hydrolase family protein
*	?	NC_002947	6060487 =	35 (1.110)	8 (0.280)	6/220	NT	25.0%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060574 =	17 (0.610)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6062179	43 (1.360)	4 (0.130)	4/242	NT	9.5%	coding (581/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	= 6062220	34 (1.100)					coding (540/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
*	?	NC_002947	= 6063028	33 (1.040)	3 (0.100)	3/238	NT	8.7%	intergenic (‑85/‑140)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
	?	NC_002947	= 6063060	31 (1.020)					intergenic (‑117/‑108)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
*	?	NC_002947	6078032 =	43 (1.360)	3 (0.100)	3/240	NT	6.0%	coding (1250/1290 nt)	PP_5330	MFS transporter
	?	NC_002947	6078076 =	53 (1.730)					coding (1206/1290 nt)	PP_5330	MFS transporter
*	?	NC_002947	= 6120585	30 (0.950)	4 (0.130)	3/240	NT	11.9%	coding (226/1329 nt)	PP_5370	oxidoreductase‑like protein
	?	NC_002947	= 6120608	30 (0.980)					coding (203/1329 nt)	PP_5370	oxidoreductase‑like protein