mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 89,439 | T→C | 11.7% | L5P (CTT→CCT) | PP_0079 → | transcriptional regulator |
| RA | 105,881 | C→T | 15.4% | A225A (GCC→GCT) | cynT → | carbonic anhydrase |
| RA | 141,137 | T→A | 19.0% | Q237L (CAG→CTG) | algB ← | alginate biosynthesis transcriptional regulator AlgB |
| RA | 181,805 | T→C | 25.0% | intergenic (+19/‑87) | PP_r01 → / → PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| RA | 181,811 | C→T | 21.7% | intergenic (+25/‑81) | PP_r01 → / → PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| RA | 181,812 | A→G | 22.4% | intergenic (+26/‑80) | PP_r01 → / → PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| RA | 181,818 | G→A | 21.8% | intergenic (+32/‑74) | PP_r01 → / → PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| RA | 195,559 | C→A | 20.3% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 39.3% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,306 | T→C | 32.9% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 37.1% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 39.5% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 36.7% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 16.6% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 14.3% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 202,318 | Δ1 bp | 15.4% | coding (7824/26049 nt) | PP_0168 → | putative surface adhesion protein |
| RA | 210,565 | C→G | 16.0% | V5357V (GTC→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 210,573 | A→T | 19.1% | E5360V (GAG→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 231,271 | C→A | 18.2% | T311N (ACC→AAC) | PP_0179 → | putative efflux transporter |
| RA | 322,142 | T→C | 26.0% | intergenic (+427/+31) | aguA → / ← PP_0267 | agmatine deiminase/ferric siderophore receptor |
| RA | 326,067 | C→A | 16.5% | *556Y (TAG→TAT) | PP_0269 ← | glutamate synthase large subunit |
| RA | 326,070 | T→G | 16.7% | A555A (GCA→GCC) | PP_0269 ← | glutamate synthase large subunit |
| RA | 344,044 | Δ1 bp | 21.1% | intergenic (+130/+59) | PP_5440 → / ← PP_t72 | hypothetical protein/tRNA‑Phe |
| RA | 344,048:1 | +T | 21.0% | intergenic (+134/+55) | PP_5440 → / ← PP_t72 | hypothetical protein/tRNA‑Phe |
| RA | 358,726 | T→C | 21.0% | W64R (TGG→CGG) ‡ | gbdR → | AraC family transcriptional regulator |
| RA | 358,727 | G→A | 21.2% | W64* (TGG→TAG) ‡ | gbdR → | AraC family transcriptional regulator |
| RA | 358,733 | G→T | 16.0% | S66I (AGC→ATC) | gbdR → | AraC family transcriptional regulator |
| RA | 358,736 | A→C | 19.3% | D67A (GAT→GCT) | gbdR → | AraC family transcriptional regulator |
| RA | 399,531 | A→G | 12.9% | V19A (GTG→GCG) ‡ | PP_0332 ← | acyltransferase |
| RA | 399,532 | C→T | 12.9% | V19M (GTG→ATG) ‡ | PP_0332 ← | acyltransferase |
| RA | 441,931 | C→T | 9.1% | P270L (CCG→CTG) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| RA | 524,352 | G→C | 29.1% | intergenic (+216/‑600) | tyrS → / → PP_16SC | tyrosine‑‑tRNA ligase/16S ribosomal RNA |
| RA | 524,355 | G→C | 29.2% | intergenic (+219/‑597) | tyrS → / → PP_16SC | tyrosine‑‑tRNA ligase/16S ribosomal RNA |
| RA | 540,089 | T→C | 14.3% | C822R (TGC→CGC) ‡ | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 540,090 | G→T | 14.3% | C822F (TGC→TTC) ‡ | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 540,092 | C→G | 14.8% | L823V (CTG→GTG) ‡ | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 540,094 | G→A | 14.2% | L823L (CTG→CTA) ‡ | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 540,118 | T→C | 15.4% | D831D (GAT→GAC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 540,121 | C→T | 14.3% | R832R (CGC→CGT) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 541,414 | T→C | 11.4% | T1263T (ACT→ACC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 541,420 | C→T | 11.4% | S1265S (TCC→TCT) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 571,620 | G→A | 22.2% | intergenic (+43/+48) | ssb → / ← PP_0486 | single‑stranded DNA‑binding protein/GntR family transcriptional regulator |
| RA | 571,621 | T→C | 22.2% | intergenic (+44/+47) | ssb → / ← PP_0486 | single‑stranded DNA‑binding protein/GntR family transcriptional regulator |
| RA | 605,124 | G→A | 14.7% | R145H (CGC→CAC) | thiL → | thiamin monophosphate kinase |
| RA | 605,129 | A→T | 14.9% | S147C (AGC→TGC) | thiL → | thiamin monophosphate kinase |
| RA | 605,134 | T→C | 14.3% | G148G (GGT→GGC) | thiL → | thiamin monophosphate kinase |
| RA | 699,725 | A→G | 47.4% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 768,071 | C→T | 44.4% | A49V (GCC→GTC) | mmuP → | S‑methyl‑L‑methionine transporter |
| RA | 868,054 | G→T | 12.2% | intergenic (+149/+28) | PP_0750 → / ← mqo‑I | hypothetical protein/malate:quinone oxidoreductase |
| RA | 868,055 | A→C | 12.8% | intergenic (+150/+27) | PP_0750 → / ← mqo‑I | hypothetical protein/malate:quinone oxidoreductase |
| RA | 968,878 | G→T | 44.4% | intergenic (‑308/+23) | PP_0831 ← / ← PP_t68 | hypothetical protein/tRNA‑Leu |
| RA | 968,881 | A→C | 44.5% | intergenic (‑311/+20) | PP_0831 ← / ← PP_t68 | hypothetical protein/tRNA‑Leu |
| RA | 981,736 | G→A | 16.6% | A204T (GCC→ACC) | hscA → | DnaK‑like molecular chaperone |
| RA | 1,070,265 | G→C | 21.4% | intergenic (+62/+82) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,070,268 | G→C | 22.3% | intergenic (+65/+79) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,075,800 | C→A | 14.0% | A171A (GCC→GCA) | mreB → | cell wall structural actin‑like protein MreB |
| RA | 1,075,803 | T→G | 14.3% | A172A (GCT→GCG) | mreB → | cell wall structural actin‑like protein MreB |
| RA | 1,121,449 | C→T | 19.8% | V295V (GTC→GTT) | PP_0982 → | YjgP/YjgQ family permease |
| RA | 1,121,450 | A→G | 20.0% | N296D (AAC→GAC) | PP_0982 → | YjgP/YjgQ family permease |
| RA | 1,130,341 | G→C | 23.5% | H101D (CAC→GAC) | PP_0990 ← | DoxX family protein |
| RA | 1,196,957 | G→A | 21.0% | A338T (GCC→ACC) | xcpQ → | type II secretion pathway protein XcpQ |
| RA | 1,280,512 | A→G | 26.6% | intergenic (‑511/‑96) | PP_1117 ← / → PP_5742 | hypothetical protein/membrane protein |
| RA | 1,327,127 | C→T | 64.0% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,359,212 | A→G | 31.0% | intergenic (‑74/+8) | PP_1183 ← / ← PP_1184 | siderophore biosynthesis protein/dienelactone hydrolase family protein |
| RA | 1,366,118 | G→T | 17.4% | S196S (TCC→TCA) | PP_1191 ← | S4 domain‑containing protein |
| RA | 1,375,382 | G→A | 15.4% | L332L (CTG→CTA) | kup → | potassium transport system protein Kup |
| JC | 1,380,833 | 131 bp→30 bp | 26.3% | intergenic (‑4/+1) | PP_t66 ← / ← PP_t65 | tRNA‑Met/tRNA‑Met |
| RA | 1,403,596 | G→A | 46.7% | intergenic (‑56/+25) | PP_1227 ← / ← PP_1228 | membrane protein/methyl‑accepting chemotaxis transducer |
| RA | 1,435,829 | A→T | 33.2% | C48S (TGC→AGC) | PP_1256 ← | alpha‑ketoglutarate semialdehyde dehydrogenase |
| RA | 1,471,405 | A→C | 13.8% | S477A (TCG→GCG) | alg8 ← | glycosyltransferase Alg8 |
| RA | 1,506,932 | A→G | 49.6% | intergenic (+44/‑73) | petC → / → sspA | ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A |
| RA | 1,506,936 | G→A | 55.5% | intergenic (+48/‑69) | petC → / → sspA | ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A |
| RA | 1,506,939 | T→C | 50.0% | intergenic (+51/‑66) | petC → / → sspA | ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A |
| RA | 1,506,943 | C→T | 45.5% | intergenic (+55/‑62) | petC → / → sspA | ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A |
| RA | 1,544,531 | C→A | 25.0% | intergenic (+48/+66) | mdfA → / ← ampG | multidrug MFS transporter/muropeptide permease AmpG |
| RA | 1,544,534 | G→C | 25.0% | intergenic (+51/+63) | mdfA → / ← ampG | multidrug MFS transporter/muropeptide permease AmpG |
| RA | 1,625,249 | G→T | 30.2% | intergenic (+30/+27) | PP_1425 → / ← nadB | hypothetical protein/L‑aspartate oxidase |
| RA | 1,625,250 | A→C | 31.3% | intergenic (+31/+26) | PP_1425 → / ← nadB | hypothetical protein/L‑aspartate oxidase |
| RA | 1,691,814 | T→C | 46.4% | intergenic (+39/‑132) | PP_1487 → / → PP_1488 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 1,691,815 | C→G | 42.7% | intergenic (+40/‑131) | PP_1487 → / → PP_1488 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 1,691,825 | C→A | 35.0% | intergenic (+50/‑121) | PP_1487 → / → PP_1488 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 1,691,828 | T→G | 29.5% | intergenic (+53/‑118) | PP_1487 → / → PP_1488 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 1,691,838 | C→G | 24.5% | intergenic (+63/‑108) | PP_1487 → / → PP_1488 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 1,691,839 | G→A | 23.8% | intergenic (+64/‑107) | PP_1487 → / → PP_1488 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 1,712,122 | A→T | 23.8% | intergenic (+71/‑187) | ppc → / → adk | phosphoenolpyruvate carboxylase/adenylate kinase |
| RA | 1,781,014 | G→T | 16.0% | P124P (CCC→CCA) | dapC ← | N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| RA | 1,851,762 | C→G | 25.1% | S269W (TCG→TGG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| JC | 1,851,813 | +CGTG | 88.8% | coding (857/2241 nt) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 1,955,252 | T→A | 19.7% | intergenic (+39/‑154) | PP_1752 → / → PP_1753 | hypothetical protein/DMT superfamily permease |
| RA | 1,955,253 | T→A | 20.0% | intergenic (+40/‑153) | PP_1752 → / → PP_1753 | hypothetical protein/DMT superfamily permease |
| RA | 1,981,203 | T→C | 21.1% | intergenic (+99/‑201) | rpsA → / → ihfB | 30S ribosomal protein S1/integration host factor subunit beta |
| RA | 1,981,205 | C→G | 21.2% | intergenic (+101/‑199) | rpsA → / → ihfB | 30S ribosomal protein S1/integration host factor subunit beta |
| RA | 1,981,207 | G→A | 23.6% | intergenic (+103/‑197) | rpsA → / → ihfB | 30S ribosomal protein S1/integration host factor subunit beta |
| RA | 2,031,413 | T→G | 20.0% | intergenic (+43/+32) | PP_1806 → / ← kdsA‑II | arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase |
| RA | 2,031,415 | T→A | 20.0% | intergenic (+45/+30) | PP_1806 → / ← kdsA‑II | arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase |
| RA | 2,031,417 | C→A | 19.1% | intergenic (+47/+28) | PP_1806 → / ← kdsA‑II | arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase |
| RA | 2,236,482 | C→T | 21.0% | A517V (GCC→GTC) | uvrB → | uvrABC excinuclease protein B |
| RA | 2,282,813 | T→G | 44.4% | intergenic (‑162/+67) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,282,817 | G→C | 31.6% | intergenic (‑166/+63) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,282,818 | G→C | 31.6% | intergenic (‑167/+62) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,282,822 | C→A | 31.6% | intergenic (‑171/+58) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,633,616 | G→T | 36.0% | W12L (TGG→TTG) | PP_2304 → | peptidyl‑prolyl cis‑trans isomerase D |
| RA | 2,659,443 | T→C | 28.6% | Q312Q (CAA→CAG) | PP_2331 ← | membrane protein |
| RA | 2,670,426 | C→T | 25.0% | E645E (GAG→GAA) | acnB ← | aconitate hydratase B |
| RA | 2,935,428 | G→A | 37.0% | V34I (GTC→ATC) | PP_2568 → | ring‑cleaving dioxygenase |
| RA | 3,105,530 | G→C | 26.8% | T22S (ACC→AGC) | arsH ← | ArsH protein |
| RA | 3,285,852 | A→T | 23.5% | I19N (ATT→AAT) | PP_2887 ← | catalase‑like peroxidase |
| RA | 3,427,059 | G→T | 20.0% | R322M (AGG→ATG) | PP_3042 → | terminase large subunit |
| RA | 3,853,809 | C→T | 28.5% | intergenic (+48/+34) | PP_3401 → / ← PP_3402 | hypothetical protein/hypothetical protein |
| RA | 3,853,815 | T→C | 26.7% | intergenic (+54/+28) | PP_3401 → / ← PP_3402 | hypothetical protein/hypothetical protein |
| RA | 3,853,816 | G→A | 26.7% | intergenic (+55/+27) | PP_3401 → / ← PP_3402 | hypothetical protein/hypothetical protein |
| RA | 3,853,822 | A→G | 25.0% | intergenic (+61/+21) | PP_3401 → / ← PP_3402 | hypothetical protein/hypothetical protein |
| RA | 3,876,562 | Δ1 bp | 23.5% | coding (1010/1212 nt) | xcpS → | type II secretion pathway protein XcpS |
| RA | 3,876,566:1 | +A | 23.5% | coding (1014/1212 nt) | xcpS → | type II secretion pathway protein XcpS |
| RA | 3,910,667 | C→T | 16.7% | Q858* (CAA→TAA) | PP_3450 → | TPR repeat‑containing protein |
| RA | 4,066,612 | C→A | 18.1% | L832L (CTG→CTT) | mdtC ← | multidrug transporter membrane protein |
| RA | 4,097,674 | G→T | 22.2% | L16M (CTG→ATG) | PP_3605 ← | LysR family transcriptional regulator |
| RA | 4,162,143 | T→C | 26.3% | intergenic (‑43/+34) | PP_3663 ← / ← pssA | GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase |
| RA | 4,162,147 | T→A | 26.3% | intergenic (‑47/+30) | PP_3663 ← / ← pssA | GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase |
| RA | 4,162,148 | T→A | 26.3% | intergenic (‑48/+29) | PP_3663 ← / ← pssA | GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase |
| RA | 4,162,152 | G→A | 27.9% | intergenic (‑52/+25) | PP_3663 ← / ← pssA | GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase |
| RA | 4,287,891 | C→A | 21.1% | R153L (CGT→CTT) | PP_3759 ← | CheB‑like methylesterase |
| RA | 4,348,749 | A→G | 54.5% | intergenic (‑70/+404) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,512,506 | C→A | 25.0% | G9V (GGT→GTT) | lolA ← | outer membrane lipoprotein carrier protein |
| RA | 4,512,509 | T→G | 25.1% | N8T (AAC→ACC) | lolA ← | outer membrane lipoprotein carrier protein |
| RA | 4,741,273:1 | +C | 68.8% | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | 31.0% | intergenic (+465/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,275 | A→G | 68.8% | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | C→G | 31.2% | intergenic (+467/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,277 | C→T | 68.8% | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,279 | C→T | 31.2% | intergenic (+470/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | 68.9% | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | 75.6% | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,284 | A→G | 25.0% | intergenic (+475/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | A→C | 75.0% | intergenic (+476/+276) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,286 | C→T | 75.0% | intergenic (+477/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,286:1 | +T | 25.0% | intergenic (+477/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298:1 | +T | 47.4% | intergenic (+489/+263) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,299 | C→T | 52.2% | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,301 | A→C | 52.7% | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,302 | A→G | 47.6% | intergenic (+493/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,304 | C→G | 52.4% | intergenic (+495/+257) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,305 | A→C | 52.6% | intergenic (+496/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,964,852 | G→T | 40.1% | A184E (GCG→GAG) | fleQ ← | transcriptional regulator FleQ |
| RA | 4,972,934 | C→A | 16.6% | G220V (GGC→GTC) | flgL ← | flagellar hook‑associated protein FlgL |
| RA | 4,993,315 | G→T | 22.2% | L408L (CTG→CTT) | bkdAA → | branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha |
| RA | 4,996,275 | G→A | 20.0% | R206H (CGC→CAC) | lpdV → | branched‑chain alpha‑keto acid dehydrogenase complex dihydrolipoyl dehydrogenase |
| RA | 5,030,796 | A→G | 30.7% | intergenic (+34/‑461) | PP_4433 → / → dadA‑I | amino acid MFS transporter/D‑amino acid dehydrogenase small subunit |
| RA | 5,030,799 | C→T | 30.8% | intergenic (+37/‑458) | PP_4433 → / → dadA‑I | amino acid MFS transporter/D‑amino acid dehydrogenase small subunit |
| RA | 5,080,326 | A→T | 20.6% | intergenic (‑143/+25) | csrA ← / ← lysC | carbon storage regulator/aspartokinase |
| RA | 5,080,327 | A→T | 19.1% | intergenic (‑144/+24) | csrA ← / ← lysC | carbon storage regulator/aspartokinase |
| RA | 5,229,239 | Δ1 bp | 16.7% | intergenic (‑133/+43) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| RA | 5,229,243 | C→G | 17.6% | intergenic (‑137/+39) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| RA | 5,229,246 | C→G | 15.4% | intergenic (‑140/+36) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| RA | 5,229,249:1 | +C | 15.4% | intergenic (‑143/+33) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| RA | 5,257,737 | A→C | 14.3% | V38G (GTG→GGG) | PP_4634 ← | alpha/beta family hydrolase |
| RA | 5,257,744 | G→C | 14.9% | P36A (CCG→GCG) | PP_4634 ← | alpha/beta family hydrolase |
| RA | 5,257,745 | G→C | 14.8% | R35R (CGC→CGG) | PP_4634 ← | alpha/beta family hydrolase |
| RA | 5,329,444 | T→A | 21.8% | L10Q (CTG→CAG) | PP_4690 → | Rieske 2Fe‑2S family protein |
| RA | 5,377,746 | C→A | 13.9% | A176S (GCG→TCG) | grpE ← | heat shock protein GrpE |
| RA | 5,377,749 | T→G | 17.3% | S175R (AGC→CGC) | grpE ← | heat shock protein GrpE |
| RA | 5,418,824 | G→A | 11.8% | L99L (CTG→TTG) | PP_4758 ← | MFS transporter |
| RA | 5,485,383 | C→G | 14.1% | P32R (CCG→CGG) | purD → | phosphoribosylamine‑‑glycine ligase |
| RA | 5,503,190 | C→G | 21.1% | A31G (GCC→GGC) | oprC → | copper receptor OprC |
| RA | 5,503,196 | C→A | 21.1% | P33H (CCT→CAT) ‡ | oprC → | copper receptor OprC |
| RA | 5,503,197 | T→G | 22.4% | P33P (CCT→CCG) ‡ | oprC → | copper receptor OprC |
| RA | 5,567,229 | A→T | 12.9% | L103* (TTG→TAG) ‡ | mutL ← | DNA mismatch repair protein MutL |
| RA | 5,567,230 | A→T | 12.9% | L103M (TTG→ATG) ‡ | mutL ← | DNA mismatch repair protein MutL |
| RA | 5,803,360 | A→G | 16.0% | M165T (ATG→ACG) | PP_5081 ← | type IV pili biogenesis protein |
| RA | 5,841,853 | C→T | 14.8% | G122G (GGC→GGT) | calB → | coniferyl aldehyde dehydrogenase |
| RA | 5,900,013 | C→G | 16.7% | V311L (GTG→CTG) | PP_5173 ← | RND family transporter |
| RA | 5,900,014 | C→G | 16.0% | Q310H (CAG→CAC) | PP_5173 ← | RND family transporter |
| RA | 5,920,622 | G→C | 17.4% | V384V (GTG→GTC) | PP_5190 → | type II secretion system protein |
| RA | 5,920,627 | C→G | 18.2% | P386R (CCC→CGC) | PP_5190 → | type II secretion system protein |
| RA | 5,920,630 | C→G | 16.7% | A387G (GCG→GGG) | PP_5190 → | type II secretion system protein |
| RA | 5,920,635 | G→C | 17.3% | D389H (GAC→CAC) | PP_5190 → | type II secretion system protein |
| RA | 5,960,051 | A→T | 16.7% | noncoding (74/103 nt) | PP_mr63 ← | rnk_pseudo ncRNA |
| RA | 5,960,052 | A→T | 16.7% | noncoding (73/103 nt) | PP_mr63 ← | rnk_pseudo ncRNA |
| RA | 6,005,043 | T→G | 23.1% | intergenic (+25/‑151) | PP_5259 → / → ydcJ | LysR family transcriptional regulator/metalloprotein |
| RA | 6,005,050 | G→C | 31.8% | intergenic (+32/‑144) | PP_5259 → / → ydcJ | LysR family transcriptional regulator/metalloprotein |
| RA | 6,005,053 | A→T | 31.8% | intergenic (+35/‑141) | PP_5259 → / → ydcJ | LysR family transcriptional regulator/metalloprotein |
| RA | 6,005,056 | G→C | 31.9% | intergenic (+38/‑138) | PP_5259 → / → ydcJ | LysR family transcriptional regulator/metalloprotein |
| RA | 6,005,063 | C→A | 28.5% | intergenic (+45/‑131) | PP_5259 → / → ydcJ | LysR family transcriptional regulator/metalloprotein |
| RA | 6,005,077 | G→C | 21.6% | intergenic (+59/‑117) | PP_5259 → / → ydcJ | LysR family transcriptional regulator/metalloprotein |
| RA | 6,023,215 | G→A | 19.1% | intergenic (+74/+70) | PP_5273 → / ← PP_5274 | oxidoreductase/hypothetical protein |
| RA | 6,023,216 | T→C | 19.1% | intergenic (+75/+69) | PP_5273 → / ← PP_5274 | oxidoreductase/hypothetical protein |
| RA | 6,048,351 | C→G | 11.1% | P257R (CCT→CGT) | PP_5300 → | LysR family transcriptional regulator |
| RA | 6,048,354 | C→G | 10.5% | T258R (ACG→AGG) | PP_5300 → | LysR family transcriptional regulator |
| RA | 6,101,898 | G→A | 22.2% | E332K (GAA→AAA) ‡ | uvrD → | DNA‑dependent ATPase I/helicase II |
| RA | 6,101,899 | A→T | 22.2% | E332V (GAA→GTA) ‡ | uvrD → | DNA‑dependent ATPase I/helicase II |
| RA | 6,101,908 | A→T | 21.0% | Y335F (TAT→TTT) ‡ | uvrD → | DNA‑dependent ATPase I/helicase II |
| RA | 6,101,909 | T→C | 21.0% | Y335Y (TAT→TAC) ‡ | uvrD → | DNA‑dependent ATPase I/helicase II |
| RA | 6,129,211 | A→C | 12.9% | intergenic (+17/+50) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| RA | 6,129,216 | A→C | 17.2% | intergenic (+22/+45) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| RA | 6,129,226 | C→T | 22.2% | intergenic (+32/+35) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| RA | 6,129,229 | A→T | 21.4% | intergenic (+35/+32) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| RA | 6,129,232 | A→G | 20.9% | intergenic (+38/+29) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| RA | 6,129,242 | G→T | 17.9% | intergenic (+48/+19) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| RA | 6,175,987 | G→A | 19.2% | G222G (GGC→GGT) | atpD ← | ATP synthase subunit beta |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 171397–176302 | 176302 | 1–4906 | 2 [1] | [1] 2 | [PP_16SA]–[PP_5SA] | [PP_16SA],PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176686–181673 | 181673 | 1–4988 | 2 [1] | [1] 2 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 850428 | 850453 | 26 | 3 [1] | [1] 3 | pcs/hemA | phosphatidylcholine synthase/glutamyl‑tRNA reductase |
| * | * | ÷ | NC_002947 | 2003295 | 2003394 | 100 | 2 [1] | [1] 2 | PP_1786 | glycosyl transferase |
| * | * | ÷ | NC_002947 | 2345885 | 2345916 | 32 | 3 [1] | [1] 2 | PP_5501 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2414567 | 2414588 | 22 | 2 [1] | [1] 4 | PP_2114/PP_2115 | transposase/hypothetical protein |
| * | * | ÷ | NC_002947 | 2573212 | 2573273 | 62 | 2 [1] | [1] 2 | PP_2256/PP_2257 | Cro/CI family transcriptional regulator/aerotaxis receptor |
| * | * | ÷ | NC_002947 | 2756218 | 2756229 | 12 | 3 [1] | [1] 2 | czcA‑II | cation efflux system protein |
| * | * | ÷ | NC_002947 | 2782700 | 2782711 | 12 | 2 [1] | [0] 3 | PP_2436 | LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 2836187 | 2836250 | 64 | 2 [1] | [1] 2 | sad‑I | NAD+‑dependent succinate semialdehyde dehydrogenase |
| * | * | ÷ | NC_002947 | 2871262 | 2871280 | 19 | 2 [1] | [1] 2 | [PP_2524] | [PP_2524] |
| * | * | ÷ | NC_002947 | 2932985 | 2933019 | 35 | 4 [1] | [1] 2 | PP_2566 | leucine‑rich repeat‑containing protein |
| * | * | ÷ | NC_002947 | 3073470 | 3073498 | 29 | 3 [1] | [1] 3 | PP_2683 | two‑component system sensor histidine kinase/response regulator |
| * | * | ÷ | NC_002947 | 3074214 | 3074246 | 33 | 2 [0] | [1] 3 | PP_2683/PP_2684 | two‑component system sensor histidine kinase/response regulator/membrane protein |
| * | * | ÷ | NC_002947 | 3109730 | 3109814 | 85 | 2 [1] | [1] 2 | yhdF | oxidoreductase YhdF |
| * | * | ÷ | NC_002947 | 3219006 | 3219106 | 101 | 2 [1] | [1] 2 | nfxB | HTH‑type transcriptional regulator NfxB |
| * | * | ÷ | NC_002947 | 3223213 | 3223237 | 25 | 2 [0] | [1] 3 | PP_2823/PP_2824 | methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 3363716 | 3363785 | 70 | 2 [1] | [1] 2 | PP_2960 | transcriptional regulator, AraC family |
| * | * | ÷ | NC_002947 | 3378129 | 3378134 | 6 | 2 [0] | [1] 2 | PP_2978 | hypothetical protein |
| * | * | ÷ | NC_002947 | 3400131 | 3400213 | 83 | 2 [0] | [1] 2 | PP_3006 | ECF family RNA polymerase sigma‑70 factor |
| * | * | ÷ | NC_002947 | 3581399 | 3581417 | 19 | 3 [1] | [0] 2 | PP_3160 | hypothetical protein |
| * | * | ÷ | NC_002947 | 3668313 | 3668345 | 33 | 3 [1] | [1] 2 | PP_3231 | hypothetical protein |
| * | * | ÷ | NC_002947 | 3846784 | 3846868 | 85 | 2 [1] | [1] 2 | PP_3395/PP_3396 | LysR family transcriptional regulator/hypothetical protein |
| * | * | ÷ | NC_002947 | 4188589 | 4188659 | 71 | 3 [1] | [1] 2 | PP_3684/PP_5611 | hypothetical protein/transcriptional regulator |
| * | * | ÷ | NC_002947 | 4944057 | 4944061 | 5 | 2 [0] | [0] 2 | PP_5673 | D‑alanine‑‑D‑alanine ligase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 86750 = | 17 (1.050) | 3 (0.210) | 3/224 | NT | 17.7% | intergenic (‑33/+112) | PP_0075/PP_0076 | choline sulfate transporter/choline betaine‑binding protein |
| ? | NC_002947 | 86841 = | 13 (0.920) | intergenic (‑124/+21) | PP_0075/PP_0076 | choline sulfate transporter/choline betaine‑binding protein | |||||
| * | ? | NC_002947 | = 219919 | 24 (1.480) | 4 (0.260) | 4/248 | NT | 14.0% | coding (25425/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | = 219942 | 26 (1.660) | coding (25448/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
| * | ? | NC_002947 | = 380858 | 18 (1.110) | 6 (0.450) | 5/210 | NT | 26.2% | intergenic (+45/+64) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 380892 | 19 (1.430) | intergenic (+79/+30) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
| * | ? | NC_002947 | 386633 = | 25 (1.540) | 3 (0.190) | 3/252 | NT | 12.6% | intergenic (‑95/‑231) | ltaE/glyA‑I | low specificity l‑threonine aldolase/serine hydroxymethyltransferase |
| ? | NC_002947 | 386722 = | 17 (1.070) | intergenic (‑184/‑142) | ltaE/glyA‑I | low specificity l‑threonine aldolase/serine hydroxymethyltransferase | |||||
| * | ? | NC_002947 | = 467954 | 16 (0.990) | 4 (0.260) | 4/246 | NT | 20.8% | coding (3006/3744 nt) | PP_0386 | sensory box protein |
| ? | NC_002947 | = 467971 | 15 (0.960) | coding (2989/3744 nt) | PP_0386 | sensory box protein | |||||
| * | ? | NC_002947 | = 668084 | 30 (1.850) | 4 (0.300) | 4/208 | NT | 13.7% | intergenic (+45/+107) | yfhM/PP_0571 | lipoprotein/membrane protein |
| ? | NC_002947 | = 668153 | 26 (1.980) | intergenic (+114/+38) | yfhM/PP_0571 | lipoprotein/membrane protein | |||||
| * | ? | NC_002947 | = 786605 | 33 (2.040) | 3 (0.200) | 3/234 | NT | 10.0% | intergenic (+24/‑281) | PP_0673/ettA | hypothetical protein/ADP/ATP ratio sensor/translation inhibitor |
| ? | NC_002947 | = 786691 | 24 (1.620) | intergenic (+110/‑195) | PP_0673/ettA | hypothetical protein/ADP/ATP ratio sensor/translation inhibitor | |||||
| * | ? | NC_002947 | = 808878 | 11 (0.680) | 3 (0.200) | 3/238 | NT | 19.9% | coding (483/1335 nt) | PP_0695 | hypothetical protein |
| ? | NC_002947 | = 808918 | 14 (0.930) | coding (443/1335 nt) | PP_0695 | hypothetical protein | |||||
| * | ? | NC_002947 | 964991 = | 27 (1.670) | 3 (0.190) | 3/250 | NT | 10.3% | coding (794/828 nt) | phnE | phosphonate ABC transporter permease |
| ? | NC_002947 | 965023 = | 26 (1.650) | coding (826/828 nt) coding (2/768 nt) |
phnE ptxC |
phosphonate ABC transporter permease phosphonate transport system permease PtxC |
|||||
| * | ? | NC_002947 | 1042217 = | 26 (1.610) | 4 (0.260) | 4/242 | NT | 15.5% | coding (24/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase |
| ? | NC_002947 | 1042258 = | 19 (1.240) | coding (65/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase | |||||
| * | ? | NC_002947 | 1194573 = | 13 (0.800) | 3 (0.190) | 3/250 | NT | 18.9% | coding (706/1653 nt) | uxpA | lipoprotein UxpA |
| ? | NC_002947 | 1194616 = | 13 (0.820) | coding (749/1653 nt) | uxpA | lipoprotein UxpA | |||||
| * | ? | NC_002947 | 1219553 = | 15 (0.930) | 4 (0.260) | 4/244 | NT | 25.6% | coding (1084/1137 nt) | PP_1064 | alpha/beta family hydrolase |
| ? | NC_002947 | 1219580 = | 9 (0.580) | coding (1111/1137 nt) | PP_1064 | alpha/beta family hydrolase | |||||
| * | ? | NC_002947 | 1426221 = | NA (NA) | 3 (0.200) | 3/242 | NT | 100% | coding (112/1422 nt) | PP_1250 | group II intron‑encoding maturase |
| ? | NC_002947 | 1430033 = | 0 (0.000) | coding (64/1422 nt) | PP_1252 | group II intron‑encoding maturase | |||||
| * | ? | NC_002947 | 1487013 = | 5 (0.310) | 5 (0.400) | 5/196 | NT | 56.1% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1487103 = | 4 (0.320) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
| * | ? | NC_002947 | = 1487042 | 4 (0.250) | 5 (0.400) | 5/196 | NT | 58.6% | intergenic (+51/+79) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | = 1487072 | 4 (0.320) | intergenic (+81/+49) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
| * | ? | NC_002947 | 1758576 = | 8 (0.490) | 3 (0.200) | 3/238 | NT | 24.6% | coding (1590/1686 nt) | PP_1563 | terminase large subunit |
| ? | NC_002947 | 1758613 = | 11 (0.730) | coding (1627/1686 nt) | PP_1563 | terminase large subunit | |||||
| * | ? | NC_002947 | 1964564 = | 17 (1.050) | 3 (0.200) | 3/238 | NT | 16.8% | coding (733/2526 nt) | yegE | phosphodiesterase domain‑containing diguanylate cyclase |
| ? | NC_002947 | 1964605 = | 14 (0.930) | coding (774/2526 nt) | yegE | phosphodiesterase domain‑containing diguanylate cyclase | |||||
| * | ? | NC_002947 | 1965064 = | 12 (0.740) | 3 (0.190) | 3/246 | NT | 19.7% | coding (1233/2526 nt) | yegE | phosphodiesterase domain‑containing diguanylate cyclase |
| ? | NC_002947 | 1965122 = | 13 (0.840) | coding (1291/2526 nt) | yegE | phosphodiesterase domain‑containing diguanylate cyclase | |||||
| * | ? | NC_002947 | = 2057866 | 15 (0.930) | 3 (0.230) | 3/208 | NT | 19.2% | intergenic (+39/+89) | PP_1832/PP_1833 | oxidase/hypothetical protein |
| ? | NC_002947 | = 2057906 | 13 (0.990) | intergenic (+79/+49) | PP_1832/PP_1833 | oxidase/hypothetical protein | |||||
| * | ? | NC_002947 | 2100027 = | 13 (0.800) | 6 (0.400) | 5/238 | NT | 30.7% | intergenic (‑95/‑110) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | 2100074 = | 15 (1.000) | intergenic (‑142/‑63) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
| * | ? | NC_002947 | = 3153866 | 11 (0.680) | 3 (0.190) | 3/244 | NT | 19.7% | coding (27/1326 nt) | PP_2770 | hypothetical protein |
| ? | NC_002947 | = 3153911 | 14 (0.910) | coding (72/1326 nt) | PP_2770 | hypothetical protein | |||||
| * | ? | NC_002947 | = 3356367 | 11 (0.680) | 4 (0.250) | 4/250 | NT | 26.0% | coding (524/891 nt) | PP_2952 | LysR family transcriptional regulator |
| ? | NC_002947 | = 3356386 | 12 (0.760) | coding (505/891 nt) | PP_2952 | LysR family transcriptional regulator | |||||
| * | ? | NC_002947 | = 3514409 | 4 (0.250) | 3 (0.190) | 3/246 | NT | 37.9% | coding (3034/4158 nt) | PP_3108 | rhs family protein |
| ? | NC_002947 | = 3514436 | 6 (0.390) | coding (3061/4158 nt) | PP_3108 | rhs family protein | |||||
| * | ? | NC_002947 | = 3602262 | 16 (0.990) | 4 (0.260) | 4/244 | NT | 20.9% | coding (936/1170 nt) | PP_3177 | hypothetical protein |
| ? | NC_002947 | = 3602291 | 15 (0.970) | coding (965/1170 nt) | PP_3177 | hypothetical protein | |||||
| * | ? | NC_002947 | 3724527 = | 11 (0.680) | 3 (0.200) | 3/242 | NT | 22.7% | coding (54/927 nt) | PP_3290 | universal stress protein family protein |
| ? | NC_002947 | 3724571 = | 10 (0.650) | coding (98/927 nt) | PP_3290 | universal stress protein family protein | |||||
| * | ? | NC_002947 | = 3787854 | 11 (0.680) | 3 (0.190) | 3/250 | NT | 20.9% | coding (824/1392 nt) | PP_3350 | hypothetical protein |
| ? | NC_002947 | = 3787883 | 12 (0.760) | coding (795/1392 nt) | PP_3350 | hypothetical protein | |||||
| * | ? | NC_002947 | = 3795313 | 18 (1.110) | 3 (0.190) | 3/248 | NT | 16.9% | coding (1184/1884 nt) | fcs | feruloyl‑CoA‑synthetase |
| ? | NC_002947 | = 3795375 | 12 (0.770) | coding (1122/1884 nt) | fcs | feruloyl‑CoA‑synthetase | |||||
| * | ? | NC_002947 | 3833927 = | 12 (0.740) | 4 (0.260) | 4/242 | NT | 25.5% | coding (549/2178 nt) | vgrG‑II | type VI secretion system protein |
| ? | NC_002947 | 3833958 = | 12 (0.780) | coding (580/2178 nt) | vgrG‑II | type VI secretion system protein | |||||
| * | ? | NC_002947 | 3952497 = | 16 (0.990) | 3 (0.200) | 3/242 | NT | 18.1% | coding (97/657 nt) | PP_3488 | Sco1/SenC family protein |
| ? | NC_002947 | 3952532 = | 12 (0.780) | coding (62/657 nt) | PP_3488 | Sco1/SenC family protein | |||||
| * | ? | NC_002947 | = 4248757 | 25 (1.540) | 3 (0.190) | 3/246 | NT | 11.1% | coding (1314/2118 nt) | PP_3724 | acyl‑CoA synthetase |
| ? | NC_002947 | = 4248799 | 24 (1.540) | coding (1272/2118 nt) | PP_3724 | acyl‑CoA synthetase | |||||
| * | ? | NC_002947 | 4318388 = | 20 (1.240) | 5 (0.320) | 4/246 | NT | 23.7% | coding (605/1221 nt) | PP_3789 | efflux transporter |
| ? | NC_002947 | 4318412 = | 13 (0.840) | coding (629/1221 nt) | PP_3789 | efflux transporter | |||||
| * | ? | NC_002947 | 4537596 = | NA (NA) | 5 (0.310) | 5/252 | NT | 62.9% | coding (887/1533 nt) | PP_4025 | transposase |
| ? | NC_002947 | = 4626705 | 3 (0.190) | coding (845/1533 nt) | PP_4091 | transposase | |||||
| * | ? | NC_002947 | = 4552017 | 3 (0.190) | 4 (0.330) | 4/190 | NT | 60.5% | intergenic (+67/+114) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
| ? | NC_002947 | = 4552068 | 3 (0.250) | intergenic (+118/+63) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family | |||||
| * | ? | NC_002947 | = 4573244 | 26 (1.610) | 3 (0.190) | 3/244 | NT | 10.4% | intergenic (+8/‑129) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
| ? | NC_002947 | = 4573328 | 27 (1.750) | intergenic (+92/‑45) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme | |||||
| * | ? | NC_002947 | 4586063 = | 12 (0.740) | 3 (0.260) | 3/180 | NT | 36.5% | intergenic (+102/+115) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | 4586167 = | 2 (0.180) | intergenic (+206/+11) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | 4722310 = | 19 (1.170) | 3 (0.190) | 3/248 | NT | 15.6% | coding (1300/1905 nt) | htpG | chaperone protein HtpG |
| ? | NC_002947 | 4722348 = | 14 (0.890) | coding (1262/1905 nt) | htpG | chaperone protein HtpG | |||||
| * | ? | NC_002947 | 4744213 = | 15 (0.930) | 3 (0.190) | 3/246 | NT | 18.5% | coding (658/813 nt) | PP_4198 | OmpA family protein |
| ? | NC_002947 | 4744257 = | 12 (0.770) | coding (614/813 nt) | PP_4198 | OmpA family protein | |||||
| * | ? | NC_002947 | = 4990792 | 22 (1.360) | 4 (0.260) | 4/244 | NT | 15.7% | coding (388/1242 nt) | PP_4399 | glutamine synthetase |
| ? | NC_002947 | = 4990803 | 22 (1.430) | coding (377/1242 nt) | PP_4399 | glutamine synthetase | |||||
| * | ? | NC_002947 | 5140177 = | 23 (1.420) | 4 (0.260) | 4/246 | NT | 14.5% | coding (1221/1380 nt) | PP_4524 | sodium‑solute symporter |
| ? | NC_002947 | 5140211 = | 25 (1.610) | coding (1255/1380 nt) | PP_4524 | sodium‑solute symporter | |||||
| * | ? | NC_002947 | = 5162643 | 16 (0.990) | 4 (0.310) | 4/204 | NT | 28.8% | intergenic (+118/+83) | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase |
| ? | NC_002947 | = 5162675 | 7 (0.540) | intergenic (+150/+51) | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase | |||||
| * | ? | NC_002947 | 5164637 = | 13 (0.800) | 4 (0.260) | 4/244 | NT | 24.7% | coding (3291/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
| ? | NC_002947 | 5164754 = | 12 (0.780) | coding (3174/3906 nt) | hrpA | ATP‑dependent helicase HrpA | |||||
| * | ? | NC_002947 | 5201627 = | 8 (0.490) | 4 (0.350) | 4/182 | NT | 42.8% | intergenic (‑65/‑115) | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| ? | NC_002947 | 5201722 = | 5 (0.430) | intergenic (‑160/‑20) | PP_4582/PP_4583 | membrane protein/putative Peptidase | |||||
| * | ? | NC_002947 | = 5210282 | 15 (0.930) | 3 (0.210) | 3/224 | NT | 14.6% | intergenic (‑100/+78) | rnd/PP_4592 | ribonuclease D/metal dependent hydrolase |
| ? | NC_002947 | = 5210341 | 22 (1.550) | intergenic (‑159/+19) | rnd/PP_4592 | ribonuclease D/metal dependent hydrolase | |||||
| * | ? | NC_002947 | = 5238687 | 10 (0.620) | 4 (0.250) | 4/250 | NT | 26.0% | coding (151/204 nt) | PP_5701 | hypothetical protein |
| ? | NC_002947 | = 5238796 | 13 (0.820) | intergenic (+56/‑225) | PP_5701/PP_4616 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 5382480 | 12 (0.740) | 3 (0.260) | 3/186 | NT | 20.9% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | = 5382508 | 14 (1.190) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
| * | ? | NC_002947 | = 5485413 | 21 (1.300) | 3 (0.190) | 3/246 | NT | 13.6% | coding (125/1296 nt) | purD | phosphoribosylamine‑‑glycine ligase |
| ? | NC_002947 | = 5485453 | 18 (1.160) | coding (165/1296 nt) | purD | phosphoribosylamine‑‑glycine ligase | |||||
| * | ? | NC_002947 | 5557811 = | 23 (1.420) | 3 (0.230) | 3/210 | NT | 15.8% | intergenic (‑131/+200) | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase |
| ? | NC_002947 | 5557893 = | 13 (0.980) | intergenic (‑213/+118) | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase | |||||
| * | ? | NC_002947 | 5626241 = | 13 (0.800) | 3 (0.200) | 3/242 | NT | 19.2% | coding (1312/1758 nt) | PP_4944 | carbamoyltransferase |
| ? | NC_002947 | 5626320 = | 13 (0.850) | coding (1233/1758 nt) | PP_4944 | carbamoyltransferase | |||||
| * | ? | NC_002947 | = 5665145 | 20 (1.240) | 4 (0.270) | 4/238 | NT | 16.5% | coding (611/834 nt) | PP_4973 | membrane protein |
| ? | NC_002947 | = 5665165 | 22 (1.460) | coding (591/834 nt) | PP_4973 | membrane protein | |||||
| * | ? | NC_002947 | = 5756736 | 24 (1.480) | 3 (0.210) | 3/230 | NT | 12.6% | intergenic (+357/‑331) | glnG/PP_5050 | two‑component system DNA‑binding response regulator GlnL/GlnG/transposase |
| ? | NC_002947 | = 5756764 | 20 (1.380) | intergenic (+385/‑303) | glnG/PP_5050 | two‑component system DNA‑binding response regulator GlnL/GlnG/transposase | |||||
| * | ? | NC_002947 | 5773524 = | 29 (1.790) | 4 (0.260) | 4/248 | NT | 12.1% | coding (31/657 nt) | betI | choline‑responsive transcriptional repressor BetI |
| ? | NC_002947 | 5773557 = | 30 (1.910) | coding (64/657 nt) | betI | choline‑responsive transcriptional repressor BetI | |||||
| * | ? | NC_002947 | 5822883 = | 16 (0.990) | 4 (0.260) | 4/246 | NT | 19.8% | coding (356/597 nt) | rdgB | dITP/XTP pyrophosphatase |
| ? | NC_002947 | 5822920 = | 17 (1.090) | coding (393/597 nt) | rdgB | dITP/XTP pyrophosphatase | |||||
| * | ? | NC_002947 | = 5823672 | 18 (1.110) | 3 (0.190) | 3/248 | NT | 15.6% | coding (552/1176 nt) | yggW | coproporphyrinogen/heterocyclic compound oxidase |
| ? | NC_002947 | = 5823707 | 15 (0.960) | coding (587/1176 nt) | yggW | coproporphyrinogen/heterocyclic compound oxidase | |||||
| * | ? | NC_002947 | 5877040 = | 20 (1.240) | 3 (0.230) | 3/208 | NT | 19.2% | intergenic (+6/+99) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| ? | NC_002947 | 5877122 = | 9 (0.680) | intergenic (+88/+17) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein | |||||
| * | ? | NC_002947 | = 5895316 | 24 (1.480) | 5 (0.330) | 5/242 | NT | 17.3% | coding (86/873 nt) | cysW | sulfate ABC transporter permease CysW |
| ? | NC_002947 | = 5895363 | 25 (1.630) | coding (39/873 nt) | cysW | sulfate ABC transporter permease CysW | |||||
| * | ? | NC_002947 | 5903816 = | 29 (1.790) | 4 (0.270) | 4/236 | NT | 11.6% | intergenic (+16/+91) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
| ? | NC_002947 | 5903898 = | 34 (2.280) | intergenic (+98/+9) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | NC_002947 | = 5914240 | 12 (0.740) | 4 (0.320) | 4/200 | NT | 28.2% | intergenic (+76/+77) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947 | = 5914280 | 11 (0.870) | intergenic (+116/+37) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
| * | ? | NC_002947 | 5920482 = | 18 (1.110) | 4 (0.260) | 4/244 | NT | 19.9% | coding (1012/1674 nt) | PP_5190 | type II secretion system protein |
| ? | NC_002947 | 5920517 = | 15 (0.970) | coding (1047/1674 nt) | PP_5190 | type II secretion system protein | |||||
| * | ? | NC_002947 | 6032808 = | 16 (0.990) | 7 (0.580) | 7/190 | NT | 52.1% | intergenic (+16/+120) | dppA‑IV/PP_5284 | dipeptide transport protein/hypothetical protein |
| ? | NC_002947 | 6032890 = | 1 (0.080) | intergenic (+98/+38) | dppA‑IV/PP_5284 | dipeptide transport protein/hypothetical protein | |||||
| * | ? | NC_002947 | 6161965 = | 24 (1.480) | 3 (0.190) | 3/244 | NT | 12.3% | intergenic (+5/+18) | PP_5403/PP_5404 | hypothetical protein/TnsC‑like transposition protein |
| ? | NC_002947 | 6161996 = | 20 (1.300) | coding (1334/1347 nt) | PP_5404 | TnsC‑like transposition protein | |||||
| * | ? | NC_002947 | 6174834 = | 29 (1.790) | 4 (0.260) | 4/248 | NT | 13.1% | coding (399/420 nt) | atpC | ATP synthase subunit epsilon |
| ? | NC_002947 | 6174870 = | 25 (1.590) | coding (363/420 nt) | atpC | ATP synthase subunit epsilon | |||||