mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 1,648,886 | Δ12 bp | intergenic (‑123/+162) | oprB‑II ← / ← PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| MC JC | 1,738,046 | Δ39,415 bp | [yffB]–PP_5476 | 59 genes [yffB], PP_1532, PP_1533, PP_1534, PP_1535, PP_1536, PP_1537, PP_5472, PP_1538, PP_1539, PP_1540, PP_1541, PP_1542, PP_1543, PP_1544, PP_1545, PP_1546, PP_5473, PP_5474, PP_1548, PP_5744, PP_1549, PP_1550, PP_1551, PP_1552, PP_1553, PP_1554, PP_1555, PP_1556, PP_1557, PP_1558, PP_1559, PP_1560, PP_1561, PP_1562, PP_1563, PP_1564, PP_1565, PP_1566, PP_1567, PP_1568, PP_1569, PP_1570, PP_1571, PP_1572, PP_1573, PP_1574, PP_1575, PP_1576, PP_1577, PP_1578, PP_5475, PP_1579, PP_1580, PP_1581, PP_1582, PP_1583, PP_1584, PP_5476 |
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| RA | 1,851,762 | C→T | S269L (TCG→TTG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,964,640 | G→A | Q255* (CAG→TAG) | fleQ ← | transcriptional regulator FleQ |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1131740 | 1131874 | 135 | 21 [19] | [20] 21 | PP_0992 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4808205 | 4808218 | 14 | 40 [0] | [0] 52 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652785 | 67 (1.050) | 28 (0.520) | 22/234 | 2.0 | 49.5% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | 4808219 = | 0 (0.000) | 30 (0.630) | 15/204 | 2.6 | 57.7% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 44 (0.930) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 5477178 | 22 (0.350) | 17 (0.380) | 14/192 | 2.6 | 46.3% | intergenic (+43/+69) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | = 5477195 | 24 (0.540) | intergenic (+60/+52) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||