BRESEQ :: Mutation Predictions

breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
JC	1,851,823	(TGCG)_2→3	coding (867/2241 nt)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	4,741,277	C→T	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,280	C→T	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283	C→G	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,285	2 bp→CT	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,965,027	C→A	E126* (GAA→TAA)	fleQ ←	transcriptional regulator FleQ
RA	5,656,850	C→A	G299V (GGT→GTT)	tktA ←	transketolase A

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171347–176321	176321	1–4975	35 [33]	[31] 37	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176628–181732	181732	1–5105	35 [34]	[33] 35	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808219 =	2 (0.020)	39 (0.590)	23/194	2.7	55.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
*	?	NC_002947	= 5988991	60 (0.910)	39 (0.590)	23/194	2.7	55.9%	intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA