mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 794,134 | C→T | A91A (GCC→GCT) | PP_0680 → | ATP‑dependent protease‑like protein |
| RA | 1,138,858 | C→T | G265S (GGT→AGT) | arcB ← | ornithine carbamoyltransferase |
| RA | 1,852,053 | G→T | W366L (TGG→TTG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 5,656,397 | A→C | L450R (CTG→CGG) | tktA ← | transketolase A |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 199913 | 203346–202872 | 2960–3434 | 42 [0] | [10] 11 | PP_0168 | putative surface adhesion protein |
| * | * | ÷ | NC_002947 | 4808205 | 4808218 | 14 | 29 [0] | [0] 37 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 199912 | 0 (0.000) | 39 (1.000) | 32/264 | 0.4 | 100% | coding (5418/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 203095 = | NA (NA) | coding (8601/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
| * | ? | NC_002947 | = 337811 | 22 (0.560) | 14 (0.450) | 13/210 | 1.6 | 42.2% | intergenic (‑58/+71) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| ? | NC_002947 | = 337839 | 21 (0.680) | intergenic (‑86/+43) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease | |||||
| * | ? | NC_002947 | 353061 = | 49 (1.240) | 9 (0.290) | 8/208 | 2.7 | 21.1% | intergenic (+25/+93) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| ? | NC_002947 | 353133 = | 29 (0.940) | intergenic (+97/+21) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein | |||||
| * | ? | NC_002947 | = 652785 | 42 (1.070) | 26 (0.780) | 22/226 | 0.7 | 59.3% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | = 1296905 | NA (NA) | 10 (0.270) | 10/252 | 2.8 | NA | coding (87/1329 nt) | PP_1133 | transposase |
| ? | NC_002947 | = 1296920 | NA (NA) | coding (102/1329 nt) | PP_1133 | transposase | |||||
| * | ? | NC_002947 | 1967188 = | 26 (0.660) | 7 (0.240) | 7/200 | 2.9 | 32.2% | intergenic (+15/+104) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947 | 1967284 = | 10 (0.340) | intergenic (+111/+8) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
| * | ? | NC_002947 | = 3110959 | 31 (0.790) | 9 (0.260) | 9/232 | 2.8 | 26.1% | intergenic (+17/+40) | PP_2724/pfpI | hypothetical protein/protease PfpI |
| ? | NC_002947 | = 3110969 | 24 (0.700) | intergenic (+27/+30) | PP_2724/pfpI | hypothetical protein/protease PfpI | |||||
| * | ? | NC_002947 | 3969641 = | NA (NA) | 12 (0.320) | 10/252 | 2.8 | NA | coding (232/321 nt) | PP_3499 | transposase |
| ? | NC_002947 | 3969659 = | NA (NA) | coding (250/321 nt) | PP_3499 | transposase | |||||
| * | ? | NC_002947 | 4808219 = | 0 (0.000) | 18 (0.620) | 11/196 | 1.8 | 62.1% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 22 (0.760) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 5477138 = | 23 (0.580) | 7 (0.260) | 6/184 | 2.9 | 40.2% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5477237 = | 5 (0.180) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | = 5870345 | 30 (0.760) | 11 (0.360) | 11/208 | 2.0 | 31.2% | intergenic (+50/+84) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | = 5870380 | 25 (0.810) | intergenic (+85/+49) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator | |||||